RNA–Protein interactions for RNA: ENST00000480900.1

HSPG2-209, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 5

Gene HSPG2, Length 500 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-209ENST00000480900 NISCHQ9Y2I1 1504 aa41.9■■■■■ 4.3
HSPG2-209ENST00000480900 CCDC180Q9P1Z9 1646 aa37.47■■■■□ 3.59
HSPG2-209ENST00000480900 ABCC9O60706 1549 aa36.8■■■■□ 3.48
HSPG2-209ENST00000480900 RB1CC1Q8TDY2 1594 aa35.35■■■■□ 3.25
HSPG2-209ENST00000480900 NACADO15069 1562 aa35.25■■■■□ 3.23
HSPG2-209ENST00000480900 DCAF8L2P0C7V8 631 aa35■■■■□ 3.19
HSPG2-209ENST00000480900 MYO15BQ96JP2 1530 aa34.96■■■■□ 3.19
HSPG2-209ENST00000480900 ZCCHC6Q5VYS8 1495 aaKnown RBP34.86■■■■□ 3.17
HSPG2-209ENST00000480900 DCAF1Q9Y4B6 1507 aa34.71■■■■□ 3.15
HSPG2-209ENST00000480900 UNC13AQ9UPW8 1703 aa34.62■■■■□ 3.13
HSPG2-209ENST00000480900 BICRAQ9NZM4 1560 aa34.28■■■■□ 3.08
HSPG2-209ENST00000480900 PABPN1Q86U42 306 aaKnown RBP eCLIP34.28■■■■□ 3.08
HSPG2-209ENST00000480900 SCRIBQ14160 1630 aa34.08■■■■□ 3.05
HSPG2-209ENST00000480900 DNAJC5BQ9UF47 199 aa33.99■■■■□ 3.03
HSPG2-209ENST00000480900 SHROOM4Q9ULL8 1493 aa33.95■■■■□ 3.02
HSPG2-209ENST00000480900 EIF4G1Q04637 1599 aaKnown RBP33.39■■■□□ 2.94
HSPG2-209ENST00000480900 CC2D2AQ9P2K1 1620 aa33.33■■■□□ 2.93
HSPG2-209ENST00000480900 CECR2Q9BXF3 1484 aa33.12■■■□□ 2.89
HSPG2-209ENST00000480900 SMARCA4P51532 1647 aa32.61■■■□□ 2.81
HSPG2-209ENST00000480900 BAZ1AQ9NRL2 1556 aaPredicted RBP32.52■■■□□ 2.8
HSPG2-209ENST00000480900 NCAPD3P42695 1498 aa32.49■■■□□ 2.79
HSPG2-209ENST00000480900 ATAD2BQ9ULI0 1458 aa32.46■■■□□ 2.79
HSPG2-209ENST00000480900 SMARCA2P51531 1590 aa32.45■■■□□ 2.78
HSPG2-209ENST00000480900 HMGXB3Q12766 1538 aa32.36■■■□□ 2.77
HSPG2-209ENST00000480900 PEG3Q9GZU2 1588 aa32.31■■■□□ 2.76
HSPG2-209ENST00000480900 MROH2BQ7Z745 1585 aa32.27■■■□□ 2.76
HSPG2-209ENST00000480900 BAZ1BQ9UIG0 1483 aaKnown RBP32.18■■■□□ 2.74
HSPG2-209ENST00000480900 WIZO95785 1651 aa31.94■■■□□ 2.7
HSPG2-209ENST00000480900 RSF1Q96T23 1441 aaPredicted RBP31.79■■■□□ 2.68
HSPG2-209ENST00000480900 NESP48681 1621 aa31.77■■■□□ 2.68
HSPG2-209ENST00000480900 ERCC6Q03468 1493 aa31.76■■■□□ 2.67
HSPG2-209ENST00000480900 LAMC3Q9Y6N6 1575 aa31.72■■■□□ 2.67
HSPG2-209ENST00000480900 TOP2AP11388 1531 aaKnown RBP31.59■■■□□ 2.65
HSPG2-209ENST00000480900 CUX2O14529 1486 aa31.57■■■□□ 2.64
HSPG2-209ENST00000480900 CADPSQ9ULU8 1353 aa31.51■■■□□ 2.63
HSPG2-209ENST00000480900 PDS5BQ9NTI5 1447 aa31.47■■■□□ 2.63
HSPG2-209ENST00000480900 KIF21AQ7Z4S6 1674 aa31.47■■■□□ 2.63
HSPG2-209ENST00000480900 THOC2Q8NI27 1593 aaKnown RBP31.43■■■□□ 2.62
HSPG2-209ENST00000480900 CFTRP13569 1480 aa31.28■■■□□ 2.6
HSPG2-209ENST00000480900 MRC2Q9UBG0 1479 aa31.18■■■□□ 2.58
HSPG2-209ENST00000480900 CCDC88BA6NC98 1476 aa31.17■■■□□ 2.58
HSPG2-209ENST00000480900 FANCD2Q9BXW9 1451 aa31.16■■■□□ 2.58
HSPG2-209ENST00000480900 CEP164Q9UPV0 1460 aa31.16■■■□□ 2.58
HSPG2-209ENST00000480900 PRDM2Q13029 1718 aa31.16■■■□□ 2.58
HSPG2-209ENST00000480900 WDR62O43379 1518 aa31.1■■■□□ 2.57
HSPG2-209ENST00000480900 URB2Q14146 1524 aaKnown RBP30.88■■■□□ 2.53
HSPG2-209ENST00000480900 DNAJC5Q9H3Z4 198 aa30.87■■■□□ 2.53
HSPG2-209ENST00000480900 SUPT5HO00267 1087 aaKnown RBP30.69■■■□□ 2.5
HSPG2-209ENST00000480900 TOPBP1Q92547 1522 aa30.64■■■□□ 2.5
HSPG2-209ENST00000480900 ABCC8Q09428 1581 aa30.64■■■□□ 2.5
HSPG2-209ENST00000480900 DNMBPQ6XZF7 1577 aa30.61■■■□□ 2.49
HSPG2-209ENST00000480900 IFT140Q96RY7 1462 aa30.52■■■□□ 2.48
HSPG2-209ENST00000480900 ZNF608Q9ULD9 1512 aaPredicted RBP30.38■■■□□ 2.45
HSPG2-209ENST00000480900 TARBP1Q13395 1621 aaKnown RBP30.36■■■□□ 2.45
HSPG2-209ENST00000480900 POLA1P09884 1462 aaPredicted RBP30.35■■■□□ 2.45
HSPG2-209ENST00000480900 CUX1P39880 1505 aa30.31■■■□□ 2.44
HSPG2-209ENST00000480900 EIF4G3O43432 1585 aaKnown RBP30.3■■■□□ 2.44
HSPG2-209ENST00000480900 FGD5Q6ZNL6 1462 aa30.24■■■□□ 2.43
HSPG2-209ENST00000480900 SOGA1O94964 1423 aa30.2■■■□□ 2.42
HSPG2-209ENST00000480900 RAD54L2Q9Y4B4 1467 aa30.19■■■□□ 2.42
HSPG2-209ENST00000480900 AQRO60306 1485 aaKnown RBP eCLIP30.15■■■□□ 2.421e-7■■■■□ 25.9
HSPG2-209ENST00000480900 WDR97A6NE52 1622 aa30.14■■■□□ 2.42
HSPG2-209ENST00000480900 OSCARQ8IYS5 282 aa30.14■■■□□ 2.42
HSPG2-209ENST00000480900 TDRD9Q8NDG6 1382 aaKnown RBP30.04■■■□□ 2.4
HSPG2-209ENST00000480900 BIVM-ERCC5R4GMW8 1640 aa30.02■■■□□ 2.4
HSPG2-209ENST00000480900 CHD1O14646 1710 aa30.01■■■□□ 2.39
HSPG2-209ENST00000480900 TOP2BQ02880 1626 aa30■■■□□ 2.39
HSPG2-209ENST00000480900 WRNQ14191 1432 aaPredicted RBP eCLIP29.99■■■□□ 2.39
HSPG2-209ENST00000480900 SYNJ1O43426 1573 aa29.96■■■□□ 2.39
HSPG2-209ENST00000480900 ABCA10Q8WWZ4 1543 aa29.95■■■□□ 2.38
HSPG2-209ENST00000480900 GRIN2BQ13224 1484 aa29.91■■■□□ 2.38
HSPG2-209ENST00000480900 PBRM1Q86U86 1689 aa29.9■■■□□ 2.38
HSPG2-209ENST00000480900 SNAPC4Q5SXM2 1469 aa29.89■■■□□ 2.38
HSPG2-209ENST00000480900 ABCA5Q8WWZ7 1642 aa29.89■■■□□ 2.37
HSPG2-209ENST00000480900 MAGI1Q96QZ7 1491 aaPredicted RBP29.88■■■□□ 2.37
HSPG2-209ENST00000480900 GAPVD1Q14C86 1478 aa29.87■■■□□ 2.37
HSPG2-209ENST00000480900 FBLN2P98095 1184 aa29.81■■■□□ 2.36
HSPG2-209ENST00000480900 RIMBP3CA6NJZ7 1639 aa29.76■■■□□ 2.35
HSPG2-209ENST00000480900 RIMBP3BA6NNM3 1639 aa29.76■■■□□ 2.35
HSPG2-209ENST00000480900 RIMBP3Q9UFD9 1639 aa29.76■■■□□ 2.35
HSPG2-209ENST00000480900 SYNJ2O15056 1496 aa29.75■■■□□ 2.35
HSPG2-209ENST00000480900 ARHGEF11O15085 1522 aa29.71■■■□□ 2.35
HSPG2-209ENST00000480900 CHMP7Q8WUX9 453 aaPredicted RBP29.7■■■□□ 2.35
HSPG2-209ENST00000480900 TRIM41Q8WV44 630 aa29.68■■■□□ 2.34
HSPG2-209ENST00000480900 CLASP1Q7Z460 1538 aa29.65■■■□□ 2.34
HSPG2-209ENST00000480900 ADAMTS12P58397 1594 aa29.62■■■□□ 2.33
HSPG2-209ENST00000480900 ERICH3Q5RHP9 1530 aa29.61■■■□□ 2.33
HSPG2-209ENST00000480900 GRIN2AQ12879 1464 aa29.53■■■□□ 2.32
HSPG2-209ENST00000480900 FHAD1B1AJZ9 1412 aa29.52■■■□□ 2.32
HSPG2-209ENST00000480900 ARAP1Q96P48 1450 aa29.44■■■□□ 2.3
HSPG2-209ENST00000480900 NUP160Q12769 1436 aa29.42■■■□□ 2.3
HSPG2-209ENST00000480900 CEP170Q5SW79 1584 aa29.4■■■□□ 2.3
HSPG2-209ENST00000480900 KIF27Q86VH2 1401 aa29.38■■■□□ 2.29
HSPG2-209ENST00000480900 CYB5RLQ6IPT4 315 aa29.36■■■□□ 2.29
HSPG2-209ENST00000480900 CUL7Q14999 1698 aa29.31■■■□□ 2.28
HSPG2-209ENST00000480900 IGF1RP08069 1367 aa29.28■■■□□ 2.28
HSPG2-209ENST00000480900 SHROOM2Q13796 1616 aa29.27■■■□□ 2.28
HSPG2-209ENST00000480900 RUSC2Q8N2Y8 1516 aa29.18■■■□□ 2.26
HSPG2-209ENST00000480900 ERCC6L2Q5T890 1561 aa29.17■■■□□ 2.26
HSPG2-209ENST00000480900 CARMIL1Q5VZK9 1371 aa29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 183.5 ms