RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 NISCHQ9Y2I1 1504 aa37.97■■■■□ 3.67
LIMS3-203ENST00000480744 CCDC180Q9P1Z9 1646 aa34.07■■■■□ 3.04
LIMS3-203ENST00000480744 ABCC9O60706 1549 aa33.94■■■■□ 3.02
LIMS3-203ENST00000480744 RB1CC1Q8TDY2 1594 aa32.36■■■□□ 2.77
LIMS3-203ENST00000480744 NACADO15069 1562 aa32.13■■■□□ 2.73
LIMS3-203ENST00000480744 DCAF8L2P0C7V8 631 aa32.06■■■□□ 2.72
LIMS3-203ENST00000480744 UNC13AQ9UPW8 1703 aa31.7■■■□□ 2.67
LIMS3-203ENST00000480744 MYO15BQ96JP2 1530 aa31.67■■■□□ 2.66
LIMS3-203ENST00000480744 DNAJC5BQ9UF47 199 aa31.63■■■□□ 2.65
LIMS3-203ENST00000480744 PABPN1Q86U42 306 aaKnown RBP eCLIP31.6■■■□□ 2.65
LIMS3-203ENST00000480744 ZCCHC6Q5VYS8 1495 aaKnown RBP31.5■■■□□ 2.63
LIMS3-203ENST00000480744 BICRAQ9NZM4 1560 aa31.38■■■□□ 2.61
LIMS3-203ENST00000480744 DCAF1Q9Y4B6 1507 aa31.34■■■□□ 2.61
LIMS3-203ENST00000480744 SCRIBQ14160 1630 aa31.09■■■□□ 2.57
LIMS3-203ENST00000480744 SHROOM4Q9ULL8 1493 aa30.93■■■□□ 2.54
LIMS3-203ENST00000480744 CC2D2AQ9P2K1 1620 aa30.66■■■□□ 2.5
LIMS3-203ENST00000480744 EIF4G1Q04637 1599 aaKnown RBP30.62■■■□□ 2.49
LIMS3-203ENST00000480744 CECR2Q9BXF3 1484 aa30.53■■■□□ 2.48
LIMS3-203ENST00000480744 SMARCA4P51532 1647 aa29.63■■■□□ 2.33
LIMS3-203ENST00000480744 NCAPD3P42695 1498 aa29.61■■■□□ 2.33
LIMS3-203ENST00000480744 ATAD2BQ9ULI0 1458 aa29.57■■■□□ 2.32
LIMS3-203ENST00000480744 SMARCA2P51531 1590 aa29.53■■■□□ 2.32
LIMS3-203ENST00000480744 BAZ1AQ9NRL2 1556 aaPredicted RBP29.49■■■□□ 2.31
LIMS3-203ENST00000480744 HMGXB3Q12766 1538 aa29.45■■■□□ 2.31
LIMS3-203ENST00000480744 BAZ1BQ9UIG0 1483 aaKnown RBP29.35■■■□□ 2.29
LIMS3-203ENST00000480744 ERCC6Q03468 1493 aa29.3■■■□□ 2.28
LIMS3-203ENST00000480744 PEG3Q9GZU2 1588 aa29.29■■■□□ 2.28
LIMS3-203ENST00000480744 MROH2BQ7Z745 1585 aa29.28■■■□□ 2.28
LIMS3-203ENST00000480744 NESP48681 1621 aa29.18■■■□□ 2.26
LIMS3-203ENST00000480744 CUX2O14529 1486 aa29.14■■■□□ 2.26
LIMS3-203ENST00000480744 LAMC3Q9Y6N6 1575 aa28.99■■■□□ 2.23
LIMS3-203ENST00000480744 WIZO95785 1651 aa28.99■■■□□ 2.23
LIMS3-203ENST00000480744 DNAJC5Q9H3Z4 198 aa28.94■■■□□ 2.22
LIMS3-203ENST00000480744 KIF21AQ7Z4S6 1674 aa28.88■■■□□ 2.21
LIMS3-203ENST00000480744 THOC2Q8NI27 1593 aaKnown RBP28.87■■■□□ 2.21
LIMS3-203ENST00000480744 PDS5BQ9NTI5 1447 aa28.79■■■□□ 2.2
LIMS3-203ENST00000480744 CADPSQ9ULU8 1353 aa28.74■■■□□ 2.19
LIMS3-203ENST00000480744 RSF1Q96T23 1441 aaPredicted RBP28.69■■■□□ 2.18
LIMS3-203ENST00000480744 TOP2AP11388 1531 aaKnown RBP28.59■■■□□ 2.17
LIMS3-203ENST00000480744 MRC2Q9UBG0 1479 aa28.56■■■□□ 2.16
LIMS3-203ENST00000480744 CEP164Q9UPV0 1460 aa28.49■■■□□ 2.15
LIMS3-203ENST00000480744 WDR62O43379 1518 aa28.48■■■□□ 2.15
LIMS3-203ENST00000480744 FANCD2Q9BXW9 1451 aa28.46■■■□□ 2.15
LIMS3-203ENST00000480744 CFTRP13569 1480 aa28.44■■■□□ 2.14
LIMS3-203ENST00000480744 PRDM2Q13029 1718 aa28.31■■■□□ 2.12
LIMS3-203ENST00000480744 CCDC88BA6NC98 1476 aa28.24■■■□□ 2.11
LIMS3-203ENST00000480744 URB2Q14146 1524 aaKnown RBP28.21■■■□□ 2.11
LIMS3-203ENST00000480744 TOPBP1Q92547 1522 aa27.93■■■□□ 2.06
LIMS3-203ENST00000480744 IFT140Q96RY7 1462 aa27.89■■■□□ 2.05
LIMS3-203ENST00000480744 ABCC8Q09428 1581 aa27.86■■■□□ 2.05
LIMS3-203ENST00000480744 DNMBPQ6XZF7 1577 aa27.86■■■□□ 2.05
LIMS3-203ENST00000480744 ZNF608Q9ULD9 1512 aaPredicted RBP27.85■■■□□ 2.05
LIMS3-203ENST00000480744 OSCARQ8IYS5 282 aa27.83■■■□□ 2.05
LIMS3-203ENST00000480744 TRIM41Q8WV44 630 aa27.83■■■□□ 2.05
LIMS3-203ENST00000480744 EIF4G3O43432 1585 aaKnown RBP27.74■■■□□ 2.03
LIMS3-203ENST00000480744 TARBP1Q13395 1621 aaKnown RBP27.68■■■□□ 2.02
LIMS3-203ENST00000480744 POLA1P09884 1462 aaPredicted RBP27.64■■■□□ 2.02
LIMS3-203ENST00000480744 AQRO60306 1485 aaKnown RBP eCLIP27.61■■■□□ 2.01
LIMS3-203ENST00000480744 SUPT5HO00267 1087 aaKnown RBP27.6■■■□□ 2.01
LIMS3-203ENST00000480744 CHD1O14646 1710 aa27.56■■■□□ 2
LIMS3-203ENST00000480744 RAD54L2Q9Y4B4 1467 aa27.56■■■□□ 2
LIMS3-203ENST00000480744 RIMBP3CA6NJZ7 1639 aa27.52■■■□□ 2
LIMS3-203ENST00000480744 RIMBP3BA6NNM3 1639 aa27.52■■■□□ 2
LIMS3-203ENST00000480744 RIMBP3Q9UFD9 1639 aa27.52■■■□□ 2
LIMS3-203ENST00000480744 SOGA1O94964 1423 aa27.52■■■□□ 2
LIMS3-203ENST00000480744 FGD5Q6ZNL6 1462 aa27.51■■■□□ 2
LIMS3-203ENST00000480744 CUX1P39880 1505 aa27.51■■□□□ 1.99
LIMS3-203ENST00000480744 TDRD9Q8NDG6 1382 aaKnown RBP27.46■■□□□ 1.99
LIMS3-203ENST00000480744 FBLN2P98095 1184 aa27.44■■□□□ 1.98
LIMS3-203ENST00000480744 ARHGEF11O15085 1522 aa27.42■■□□□ 1.98
LIMS3-203ENST00000480744 WDR97A6NE52 1622 aa27.39■■□□□ 1.98
LIMS3-203ENST00000480744 SNAPC4Q5SXM2 1469 aa27.35■■□□□ 1.97
LIMS3-203ENST00000480744 GRIN2BQ13224 1484 aa27.27■■□□□ 1.96
LIMS3-203ENST00000480744 PBRM1Q86U86 1689 aa27.27■■□□□ 1.96
LIMS3-203ENST00000480744 MAGI1Q96QZ7 1491 aaPredicted RBP27.25■■□□□ 1.95
LIMS3-203ENST00000480744 CHMP7Q8WUX9 453 aaPredicted RBP27.23■■□□□ 1.95
LIMS3-203ENST00000480744 GAPVD1Q14C86 1478 aa27.2■■□□□ 1.95
LIMS3-203ENST00000480744 CYB5RLQ6IPT4 315 aa27.2■■□□□ 1.94
LIMS3-203ENST00000480744 SYNJ1O43426 1573 aa27.18■■□□□ 1.94
LIMS3-203ENST00000480744 ABCA10Q8WWZ4 1543 aa27.18■■□□□ 1.94
LIMS3-203ENST00000480744 SYNJ2O15056 1496 aa27.17■■□□□ 1.94
LIMS3-203ENST00000480744 ABCA5Q8WWZ7 1642 aa27.16■■□□□ 1.94
LIMS3-203ENST00000480744 CLASP1Q7Z460 1538 aa27.16■■□□□ 1.94
LIMS3-203ENST00000480744 ARAP1Q96P48 1450 aa27.15■■□□□ 1.94
LIMS3-203ENST00000480744 BIVM-ERCC5R4GMW8 1640 aa27.13■■□□□ 1.93
LIMS3-203ENST00000480744 TOP2BQ02880 1626 aa27.11■■□□□ 1.93
LIMS3-203ENST00000480744 WRNQ14191 1432 aaPredicted RBP eCLIP27.1■■□□□ 1.93
LIMS3-203ENST00000480744 ADAMTS12P58397 1594 aa26.97■■□□□ 1.91
LIMS3-203ENST00000480744 GRIN2AQ12879 1464 aa26.93■■□□□ 1.9
LIMS3-203ENST00000480744 TRHP20396 242 aaPredicted RBP26.9■■□□□ 1.9
LIMS3-203ENST00000480744 ERICH3Q5RHP9 1530 aa26.85■■□□□ 1.89
LIMS3-203ENST00000480744 CEP170Q5SW79 1584 aa26.84■■□□□ 1.89
LIMS3-203ENST00000480744 FHAD1B1AJZ9 1412 aa26.84■■□□□ 1.89
LIMS3-203ENST00000480744 NUP160Q12769 1436 aa26.8■■□□□ 1.88
LIMS3-203ENST00000480744 ERCC6L2Q5T890 1561 aa26.77■■□□□ 1.88
LIMS3-203ENST00000480744 SHROOM2Q13796 1616 aa26.71■■□□□ 1.87
LIMS3-203ENST00000480744 RUSC2Q8N2Y8 1516 aa26.58■■□□□ 1.85
LIMS3-203ENST00000480744 KIF27Q86VH2 1401 aa26.56■■□□□ 1.84
LIMS3-203ENST00000480744 PRG4Q92954 1404 aaPredicted RBP26.56■■□□□ 1.84
LIMS3-203ENST00000480744 CUL7Q14999 1698 aa26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms