RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 NISCHQ9Y2I1 1504 aa28.72■■■□□ 2.19
TTC28-206ENST00000480563 ABCC9O60706 1549 aa26.27■■□□□ 1.8
TTC28-206ENST00000480563 CCDC180Q9P1Z9 1646 aa25.83■■□□□ 1.73
TTC28-206ENST00000480563 DNAJC5BQ9UF47 199 aa25.02■■□□□ 1.6
TTC28-206ENST00000480563 RB1CC1Q8TDY2 1594 aa24.81■■□□□ 1.56
TTC28-206ENST00000480563 NACADO15069 1562 aa24.56■■□□□ 1.52
TTC28-206ENST00000480563 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
TTC28-206ENST00000480563 PABPN1Q86U42 306 aaKnown RBP eCLIP24.47■■□□□ 1.51
TTC28-206ENST00000480563 UNC13AQ9UPW8 1703 aa24.15■■□□□ 1.46
TTC28-206ENST00000480563 MYO15BQ96JP2 1530 aa24.1■■□□□ 1.45
TTC28-206ENST00000480563 BICRAQ9NZM4 1560 aa24.1■■□□□ 1.45
TTC28-206ENST00000480563 SHROOM4Q9ULL8 1493 aa23.72■■□□□ 1.39
TTC28-206ENST00000480563 ZCCHC6Q5VYS8 1495 aaKnown RBP23.7■■□□□ 1.38
TTC28-206ENST00000480563 CECR2Q9BXF3 1484 aa23.7■■□□□ 1.38
TTC28-206ENST00000480563 DCAF1Q9Y4B6 1507 aa23.67■■□□□ 1.38
TTC28-206ENST00000480563 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
TTC28-206ENST00000480563 SCRIBQ14160 1630 aa23.56■■□□□ 1.36
TTC28-206ENST00000480563 EIF4G1Q04637 1599 aaKnown RBP23.54■■□□□ 1.36
TTC28-206ENST00000480563 DNAJC5Q9H3Z4 198 aa23.22■■□□□ 1.31
TTC28-206ENST00000480563 CUX2O14529 1486 aa22.75■■□□□ 1.23
TTC28-206ENST00000480563 NCAPD3P42695 1498 aa22.73■■□□□ 1.23
TTC28-206ENST00000480563 ERCC6Q03468 1493 aa22.71■■□□□ 1.23
TTC28-206ENST00000480563 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
TTC28-206ENST00000480563 SMARCA2P51531 1590 aa22.48■■□□□ 1.19
TTC28-206ENST00000480563 NESP48681 1621 aa22.46■■□□□ 1.19
TTC28-206ENST00000480563 HMGXB3Q12766 1538 aa22.46■■□□□ 1.19
TTC28-206ENST00000480563 SMARCA4P51532 1647 aa22.43■■□□□ 1.18
TTC28-206ENST00000480563 BAZ1BQ9UIG0 1483 aaKnown RBP22.34■■□□□ 1.17
TTC28-206ENST00000480563 BAZ1AQ9NRL2 1556 aaPredicted RBP22.29■■□□□ 1.16
TTC28-206ENST00000480563 THOC2Q8NI27 1593 aaKnown RBP22.23■■□□□ 1.15
TTC28-206ENST00000480563 PEG3Q9GZU2 1588 aa22.22■■□□□ 1.15
TTC28-206ENST00000480563 LAMC3Q9Y6N6 1575 aa22.21■■□□□ 1.15
TTC28-206ENST00000480563 PDS5BQ9NTI5 1447 aa22.15■■□□□ 1.14
TTC28-206ENST00000480563 MROH2BQ7Z745 1585 aa22.13■■□□□ 1.13
TTC28-206ENST00000480563 KIF21AQ7Z4S6 1674 aa22.08■■□□□ 1.13
TTC28-206ENST00000480563 TRIM41Q8WV44 630 aa22.06■■□□□ 1.12
TTC28-206ENST00000480563 CADPSQ9ULU8 1353 aa22.03■■□□□ 1.12
TTC28-206ENST00000480563 MRC2Q9UBG0 1479 aa21.96■■□□□ 1.11
TTC28-206ENST00000480563 WDR62O43379 1518 aa21.89■■□□□ 1.09
TTC28-206ENST00000480563 WIZO95785 1651 aa21.82■■□□□ 1.08
TTC28-206ENST00000480563 CEP164Q9UPV0 1460 aa21.8■■□□□ 1.08
TTC28-206ENST00000480563 FANCD2Q9BXW9 1451 aa21.76■■□□□ 1.07
TTC28-206ENST00000480563 OSCARQ8IYS5 282 aa21.75■■□□□ 1.07
TTC28-206ENST00000480563 CFTRP13569 1480 aa21.68■■□□□ 1.06
TTC28-206ENST00000480563 URB2Q14146 1524 aaKnown RBP21.59■■□□□ 1.05
TTC28-206ENST00000480563 RSF1Q96T23 1441 aaPredicted RBP21.57■■□□□ 1.04
TTC28-206ENST00000480563 TOP2AP11388 1531 aaKnown RBP21.52■■□□□ 1.04
TTC28-206ENST00000480563 RIMBP3CA6NJZ7 1639 aa21.4■■□□□ 1.02
TTC28-206ENST00000480563 RIMBP3BA6NNM3 1639 aa21.4■■□□□ 1.02
TTC28-206ENST00000480563 RIMBP3Q9UFD9 1639 aa21.4■■□□□ 1.02
TTC28-206ENST00000480563 ZNF608Q9ULD9 1512 aaPredicted RBP21.39■■□□□ 1.02
TTC28-206ENST00000480563 IFT140Q96RY7 1462 aa21.39■■□□□ 1.01
TTC28-206ENST00000480563 CCDC88BA6NC98 1476 aa21.33■■□□□ 1.01
TTC28-206ENST00000480563 ARHGEF11O15085 1522 aa21.31■■□□□ 1
TTC28-206ENST00000480563 TOPBP1Q92547 1522 aa21.29■■□□□ 1
TTC28-206ENST00000480563 PRDM2Q13029 1718 aa21.29■■□□□ 1
TTC28-206ENST00000480563 CYB5RLQ6IPT4 315 aa21.28■■□□□ 1
TTC28-206ENST00000480563 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
TTC28-206ENST00000480563 EIF4G3O43432 1585 aaKnown RBP21.19■□□□□ 0.98
TTC28-206ENST00000480563 AQRO60306 1485 aaKnown RBP eCLIP21.19■□□□□ 0.98
TTC28-206ENST00000480563 DNMBPQ6XZF7 1577 aa21.16■□□□□ 0.98
TTC28-206ENST00000480563 TRHP20396 242 aaPredicted RBP21.16■□□□□ 0.98
TTC28-206ENST00000480563 FBLN2P98095 1184 aa21.16■□□□□ 0.98
TTC28-206ENST00000480563 TARBP1Q13395 1621 aaKnown RBP21.1■□□□□ 0.97
TTC28-206ENST00000480563 ARAP1Q96P48 1450 aa21.09■□□□□ 0.97
TTC28-206ENST00000480563 CHD1O14646 1710 aa21.07■□□□□ 0.96
TTC28-206ENST00000480563 POLA1P09884 1462 aaPredicted RBP21.06■□□□□ 0.96
TTC28-206ENST00000480563 TDRD9Q8NDG6 1382 aaKnown RBP21.02■□□□□ 0.96
TTC28-206ENST00000480563 RAD54L2Q9Y4B4 1467 aa21.01■□□□□ 0.95
TTC28-206ENST00000480563 SOGA1O94964 1423 aa21.01■□□□□ 0.95
TTC28-206ENST00000480563 CHMP7Q8WUX9 453 aaPredicted RBP20.94■□□□□ 0.94
TTC28-206ENST00000480563 SNAPC4Q5SXM2 1469 aa20.92■□□□□ 0.94
TTC28-206ENST00000480563 FGD5Q6ZNL6 1462 aa20.88■□□□□ 0.93
TTC28-206ENST00000480563 CLASP1Q7Z460 1538 aa20.87■□□□□ 0.93
TTC28-206ENST00000480563 MAGI1Q96QZ7 1491 aaPredicted RBP20.84■□□□□ 0.93
TTC28-206ENST00000480563 WDR97A6NE52 1622 aa20.84■□□□□ 0.93
TTC28-206ENST00000480563 SYNJ1O43426 1573 aa20.84■□□□□ 0.93
TTC28-206ENST00000480563 GRIN2BQ13224 1484 aa20.83■□□□□ 0.93
TTC28-206ENST00000480563 CUX1P39880 1505 aa20.79■□□□□ 0.92
TTC28-206ENST00000480563 SYNJ2O15056 1496 aa20.79■□□□□ 0.92
TTC28-206ENST00000480563 AEBP2Q6ZN18 517 aaPredicted RBP20.78■□□□□ 0.92
TTC28-206ENST00000480563 GAPVD1Q14C86 1478 aa20.72■□□□□ 0.91
TTC28-206ENST00000480563 PBRM1Q86U86 1689 aa20.62■□□□□ 0.89
TTC28-206ENST00000480563 ABCA10Q8WWZ4 1543 aa20.62■□□□□ 0.89
TTC28-206ENST00000480563 ABCA5Q8WWZ7 1642 aa20.57■□□□□ 0.88
TTC28-206ENST00000480563 GRIN2AQ12879 1464 aa20.55■□□□□ 0.88
TTC28-206ENST00000480563 ERCC6L2Q5T890 1561 aa20.55■□□□□ 0.88
TTC28-206ENST00000480563 WRNQ14191 1432 aaPredicted RBP eCLIP20.51■□□□□ 0.87
TTC28-206ENST00000480563 NUP160Q12769 1436 aa20.49■□□□□ 0.87
TTC28-206ENST00000480563 CEP170Q5SW79 1584 aa20.48■□□□□ 0.87
TTC28-206ENST00000480563 ADAMTS12P58397 1594 aa20.45■□□□□ 0.86
TTC28-206ENST00000480563 FHAD1B1AJZ9 1412 aa20.44■□□□□ 0.86
TTC28-206ENST00000480563 SUPT5HO00267 1087 aaKnown RBP20.44■□□□□ 0.86
TTC28-206ENST00000480563 SHROOM2Q13796 1616 aa20.39■□□□□ 0.86
TTC28-206ENST00000480563 JPH4Q96JJ6 628 aa20.36■□□□□ 0.85
TTC28-206ENST00000480563 PRG4Q92954 1404 aaPredicted RBP20.36■□□□□ 0.85
TTC28-206ENST00000480563 TOP2BQ02880 1626 aa20.35■□□□□ 0.85
TTC28-206ENST00000480563 ERICH3Q5RHP9 1530 aa20.33■□□□□ 0.85
TTC28-206ENST00000480563 BIVM-ERCC5R4GMW8 1640 aa20.32■□□□□ 0.84
TTC28-206ENST00000480563 FAM69CQ0P6D2 419 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms