RNA–Protein interactions for RNA: ENST00000480562.3

ABCF3-214, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 1 (best)

Gene ABCF3, Length 1,182 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-214ENST00000480562 NISCHQ9Y2I1 1504 aa47.06■■■■■ 5.12
ABCF3-214ENST00000480562 ABCC9O60706 1549 aa42.15■■■■■ 4.34
ABCF3-214ENST00000480562 CCDC180Q9P1Z9 1646 aa42.13■■■■■ 4.33
ABCF3-214ENST00000480562 RB1CC1Q8TDY2 1594 aa40.09■■■■■ 4.01
ABCF3-214ENST00000480562 NACADO15069 1562 aa39.83■■■■□ 3.97
ABCF3-214ENST00000480562 DCAF8L2P0C7V8 631 aa39.79■■■■□ 3.96
ABCF3-214ENST00000480562 DNAJC5BQ9UF47 199 aa39.49■■■■□ 3.91
ABCF3-214ENST00000480562 PABPN1Q86U42 306 aaKnown RBP eCLIP39.3■■■■□ 3.881e-6■■■□□ 18.9
ABCF3-214ENST00000480562 MYO15BQ96JP2 1530 aa39.27■■■■□ 3.88
ABCF3-214ENST00000480562 UNC13AQ9UPW8 1703 aa39.18■■■■□ 3.86
ABCF3-214ENST00000480562 ZCCHC6Q5VYS8 1495 aaKnown RBP39.01■■■■□ 3.84
ABCF3-214ENST00000480562 BICRAQ9NZM4 1560 aa38.95■■■■□ 3.83
ABCF3-214ENST00000480562 DCAF1Q9Y4B6 1507 aa38.83■■■■□ 3.81
ABCF3-214ENST00000480562 SCRIBQ14160 1630 aa38.48■■■■□ 3.75
ABCF3-214ENST00000480562 SHROOM4Q9ULL8 1493 aa38.34■■■■□ 3.73
ABCF3-214ENST00000480562 CC2D2AQ9P2K1 1620 aa38.04■■■■□ 3.68
ABCF3-214ENST00000480562 EIF4G1Q04637 1599 aaKnown RBP37.97■■■■□ 3.67
ABCF3-214ENST00000480562 CECR2Q9BXF3 1484 aa37.93■■■■□ 3.66
ABCF3-214ENST00000480562 NCAPD3P42695 1498 aa36.79■■■■□ 3.48
ABCF3-214ENST00000480562 ATAD2BQ9ULI0 1458 aa36.71■■■■□ 3.47
ABCF3-214ENST00000480562 SMARCA4P51532 1647 aa36.68■■■■□ 3.46
ABCF3-214ENST00000480562 SMARCA2P51531 1590 aa36.58■■■■□ 3.45
ABCF3-214ENST00000480562 HMGXB3Q12766 1538 aa36.5■■■■□ 3.43
ABCF3-214ENST00000480562 BAZ1AQ9NRL2 1556 aaPredicted RBP36.5■■■■□ 3.43
ABCF3-214ENST00000480562 ERCC6Q03468 1493 aa36.36■■■■□ 3.41
ABCF3-214ENST00000480562 BAZ1BQ9UIG0 1483 aaKnown RBP36.36■■■■□ 3.41
ABCF3-214ENST00000480562 MROH2BQ7Z745 1585 aa36.29■■■■□ 3.4
ABCF3-214ENST00000480562 PEG3Q9GZU2 1588 aa36.29■■■■□ 3.4
ABCF3-214ENST00000480562 NESP48681 1621 aa36.23■■■■□ 3.39
ABCF3-214ENST00000480562 CUX2O14529 1486 aa36.21■■■■□ 3.39
ABCF3-214ENST00000480562 DNAJC5Q9H3Z4 198 aa36.13■■■■□ 3.37
ABCF3-214ENST00000480562 LAMC3Q9Y6N6 1575 aa35.93■■■■□ 3.34
ABCF3-214ENST00000480562 WIZO95785 1651 aa35.85■■■■□ 3.33
ABCF3-214ENST00000480562 THOC2Q8NI27 1593 aaKnown RBP35.8■■■■□ 3.32
ABCF3-214ENST00000480562 PDS5BQ9NTI5 1447 aa35.74■■■■□ 3.31
ABCF3-214ENST00000480562 KIF21AQ7Z4S6 1674 aa35.73■■■■□ 3.31
ABCF3-214ENST00000480562 CADPSQ9ULU8 1353 aa35.7■■■■□ 3.31
ABCF3-214ENST00000480562 RSF1Q96T23 1441 aaPredicted RBP35.57■■■■□ 3.29
ABCF3-214ENST00000480562 MRC2Q9UBG0 1479 aa35.43■■■■□ 3.26
ABCF3-214ENST00000480562 TOP2AP11388 1531 aaKnown RBP35.38■■■■□ 3.25
ABCF3-214ENST00000480562 WDR62O43379 1518 aa35.33■■■■□ 3.25
ABCF3-214ENST00000480562 CEP164Q9UPV0 1460 aa35.31■■■■□ 3.24
ABCF3-214ENST00000480562 CFTRP13569 1480 aa35.29■■■■□ 3.24
ABCF3-214ENST00000480562 FANCD2Q9BXW9 1451 aa35.29■■■■□ 3.24
ABCF3-214ENST00000480562 CCDC88BA6NC98 1476 aa35.02■■■■□ 3.2
ABCF3-214ENST00000480562 URB2Q14146 1524 aaKnown RBP35.01■■■■□ 3.19
ABCF3-214ENST00000480562 PRDM2Q13029 1718 aa34.89■■■■□ 3.18
ABCF3-214ENST00000480562 TRIM41Q8WV44 630 aa34.66■■■■□ 3.14
ABCF3-214ENST00000480562 TOPBP1Q92547 1522 aa34.64■■■■□ 3.14
ABCF3-214ENST00000480562 OSCARQ8IYS5 282 aa34.62■■■■□ 3.13
ABCF3-214ENST00000480562 IFT140Q96RY7 1462 aa34.59■■■■□ 3.13
ABCF3-214ENST00000480562 ZNF608Q9ULD9 1512 aaPredicted RBP34.58■■■■□ 3.13
ABCF3-214ENST00000480562 ABCC8Q09428 1581 aa34.53■■■■□ 3.12
ABCF3-214ENST00000480562 DNMBPQ6XZF7 1577 aa34.5■■■■□ 3.11
ABCF3-214ENST00000480562 EIF4G3O43432 1585 aaKnown RBP34.35■■■■□ 3.09
ABCF3-214ENST00000480562 TARBP1Q13395 1621 aaKnown RBP34.31■■■■□ 3.08
ABCF3-214ENST00000480562 AQRO60306 1485 aaKnown RBP eCLIP34.29■■■■□ 3.086e-6■■■■□ 25.1
ABCF3-214ENST00000480562 POLA1P09884 1462 aaPredicted RBP34.29■■■■□ 3.08
ABCF3-214ENST00000480562 RAD54L2Q9Y4B4 1467 aa34.2■■■■□ 3.07
ABCF3-214ENST00000480562 SOGA1O94964 1423 aa34.15■■■■□ 3.06
ABCF3-214ENST00000480562 SUPT5HO00267 1087 aaKnown RBP34.15■■■■□ 3.06
ABCF3-214ENST00000480562 RIMBP3CA6NJZ7 1639 aa34.15■■■■□ 3.06
ABCF3-214ENST00000480562 RIMBP3BA6NNM3 1639 aa34.15■■■■□ 3.06
ABCF3-214ENST00000480562 RIMBP3Q9UFD9 1639 aa34.15■■■■□ 3.06
ABCF3-214ENST00000480562 FGD5Q6ZNL6 1462 aa34.1■■■■□ 3.05
ABCF3-214ENST00000480562 TDRD9Q8NDG6 1382 aaKnown RBP34.1■■■■□ 3.05
ABCF3-214ENST00000480562 CUX1P39880 1505 aa34.09■■■■□ 3.05
ABCF3-214ENST00000480562 CHD1O14646 1710 aa34.07■■■■□ 3.05
ABCF3-214ENST00000480562 FBLN2P98095 1184 aa34.07■■■■□ 3.04
ABCF3-214ENST00000480562 ARHGEF11O15085 1522 aa34.05■■■■□ 3.04
ABCF3-214ENST00000480562 SNAPC4Q5SXM2 1469 aa33.91■■■■□ 3.02
ABCF3-214ENST00000480562 WDR97A6NE52 1622 aa33.9■■■■□ 3.02
ABCF3-214ENST00000480562 CYB5RLQ6IPT4 315 aa33.85■■■■□ 3.01
ABCF3-214ENST00000480562 GRIN2BQ13224 1484 aa33.82■■■■□ 3
ABCF3-214ENST00000480562 CHMP7Q8WUX9 453 aaPredicted RBP33.8■■■■□ 3
ABCF3-214ENST00000480562 MAGI1Q96QZ7 1491 aaPredicted RBP33.79■■■■□ 3
ABCF3-214ENST00000480562 ARAP1Q96P48 1450 aa33.74■■■□□ 2.99
ABCF3-214ENST00000480562 GAPVD1Q14C86 1478 aa33.73■■■□□ 2.99
ABCF3-214ENST00000480562 SYNJ2O15056 1496 aa33.69■■■□□ 2.98
ABCF3-214ENST00000480562 ABCA10Q8WWZ4 1543 aa33.69■■■□□ 2.98
ABCF3-214ENST00000480562 CLASP1Q7Z460 1538 aa33.69■■■□□ 2.98
ABCF3-214ENST00000480562 PBRM1Q86U86 1689 aa33.68■■■□□ 2.98
ABCF3-214ENST00000480562 SYNJ1O43426 1573 aa33.67■■■□□ 2.98
ABCF3-214ENST00000480562 ABCA5Q8WWZ7 1642 aa33.63■■■□□ 2.97
ABCF3-214ENST00000480562 WRNQ14191 1432 aaPredicted RBP eCLIP33.59■■■□□ 2.97
ABCF3-214ENST00000480562 TOP2BQ02880 1626 aa33.53■■■□□ 2.96
ABCF3-214ENST00000480562 BIVM-ERCC5R4GMW8 1640 aa33.52■■■□□ 2.96
ABCF3-214ENST00000480562 TRHP20396 242 aaPredicted RBP33.45■■■□□ 2.95
ABCF3-214ENST00000480562 GRIN2AQ12879 1464 aa33.39■■■□□ 2.94
ABCF3-214ENST00000480562 ADAMTS12P58397 1594 aa33.38■■■□□ 2.93
ABCF3-214ENST00000480562 FHAD1B1AJZ9 1412 aa33.29■■■□□ 2.92
ABCF3-214ENST00000480562 CEP170Q5SW79 1584 aa33.27■■■□□ 2.92
ABCF3-214ENST00000480562 NUP160Q12769 1436 aa33.27■■■□□ 2.92
ABCF3-214ENST00000480562 ERICH3Q5RHP9 1530 aa33.25■■■□□ 2.91
ABCF3-214ENST00000480562 ERCC6L2Q5T890 1561 aa33.22■■■□□ 2.91
ABCF3-214ENST00000480562 SHROOM2Q13796 1616 aa33.09■■■□□ 2.89
ABCF3-214ENST00000480562 PRG4Q92954 1404 aaPredicted RBP32.97■■■□□ 2.87
ABCF3-214ENST00000480562 JPH4Q96JJ6 628 aa32.97■■■□□ 2.87
ABCF3-214ENST00000480562 IGF1RP08069 1367 aa32.91■■■□□ 2.86
ABCF3-214ENST00000480562 KIF27Q86VH2 1401 aa32.9■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms