RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-223ENST00000480525 NISCHQ9Y2I1 1504 aa12.44□□□□□ -0.42
HDAC6-223ENST00000480525 CCDC180Q9P1Z9 1646 aa11.17□□□□□ -0.62
HDAC6-223ENST00000480525 ABCC9O60706 1549 aa10.55□□□□□ -0.72
HDAC6-223ENST00000480525 MYO15BQ96JP2 1530 aa10.52□□□□□ -0.73
HDAC6-223ENST00000480525 DCAF1Q9Y4B6 1507 aa10.46□□□□□ -0.74
HDAC6-223ENST00000480525 NACADO15069 1562 aa10.43□□□□□ -0.74
HDAC6-223ENST00000480525 ZCCHC6Q5VYS8 1495 aaKnown RBP10.41□□□□□ -0.74
HDAC6-223ENST00000480525 RB1CC1Q8TDY2 1594 aa10.39□□□□□ -0.75
HDAC6-223ENST00000480525 SHROOM4Q9ULL8 1493 aa10.16□□□□□ -0.78
HDAC6-223ENST00000480525 UNC13AQ9UPW8 1703 aa10.14□□□□□ -0.79
HDAC6-223ENST00000480525 BICRAQ9NZM4 1560 aa10.03□□□□□ -0.8
HDAC6-223ENST00000480525 DCAF8L2P0C7V8 631 aa10.01□□□□□ -0.81
HDAC6-223ENST00000480525 SCRIBQ14160 1630 aa9.95□□□□□ -0.82
HDAC6-223ENST00000480525 PABPN1Q86U42 306 aaKnown RBP eCLIP9.77□□□□□ -0.851e-7■■■□□ 17.3
HDAC6-223ENST00000480525 EIF4G1Q04637 1599 aaKnown RBP9.75□□□□□ -0.85
HDAC6-223ENST00000480525 BAZ1AQ9NRL2 1556 aaPredicted RBP9.67□□□□□ -0.86
HDAC6-223ENST00000480525 PEG3Q9GZU2 1588 aa9.67□□□□□ -0.86
HDAC6-223ENST00000480525 CC2D2AQ9P2K1 1620 aa9.66□□□□□ -0.86
HDAC6-223ENST00000480525 SMARCA4P51532 1647 aa9.64□□□□□ -0.87
HDAC6-223ENST00000480525 SMARCA2P51531 1590 aa9.61□□□□□ -0.87
HDAC6-223ENST00000480525 HMGXB3Q12766 1538 aa9.6□□□□□ -0.87
HDAC6-223ENST00000480525 NCAPD3P42695 1498 aa9.59□□□□□ -0.87
HDAC6-223ENST00000480525 DNAJC5BQ9UF47 199 aa9.56□□□□□ -0.88
HDAC6-223ENST00000480525 CECR2Q9BXF3 1484 aa9.55□□□□□ -0.88
HDAC6-223ENST00000480525 ATAD2BQ9ULI0 1458 aa9.54□□□□□ -0.88
HDAC6-223ENST00000480525 MROH2BQ7Z745 1585 aa9.51□□□□□ -0.89
HDAC6-223ENST00000480525 RSF1Q96T23 1441 aaPredicted RBP9.45□□□□□ -0.9
HDAC6-223ENST00000480525 BAZ1BQ9UIG0 1483 aaKnown RBP9.45□□□□□ -0.9
HDAC6-223ENST00000480525 WIZO95785 1651 aa9.4□□□□□ -0.9
HDAC6-223ENST00000480525 TOP2AP11388 1531 aaKnown RBP9.4□□□□□ -0.91
HDAC6-223ENST00000480525 LAMC3Q9Y6N6 1575 aa9.35□□□□□ -0.91
HDAC6-223ENST00000480525 PRDM2Q13029 1718 aa9.3□□□□□ -0.92
HDAC6-223ENST00000480525 CFTRP13569 1480 aa9.26□□□□□ -0.93
HDAC6-223ENST00000480525 CADPSQ9ULU8 1353 aa9.25□□□□□ -0.93
HDAC6-223ENST00000480525 PDS5BQ9NTI5 1447 aa9.22□□□□□ -0.93
HDAC6-223ENST00000480525 CCDC88BA6NC98 1476 aa9.2□□□□□ -0.94
HDAC6-223ENST00000480525 CUX2O14529 1486 aa9.16□□□□□ -0.94
HDAC6-223ENST00000480525 KIF21AQ7Z4S6 1674 aa9.16□□□□□ -0.94
HDAC6-223ENST00000480525 NESP48681 1621 aa9.16□□□□□ -0.94
HDAC6-223ENST00000480525 THOC2Q8NI27 1593 aaKnown RBP9.16□□□□□ -0.94
HDAC6-223ENST00000480525 ERCC6Q03468 1493 aa9.13□□□□□ -0.95
HDAC6-223ENST00000480525 ABCC8Q09428 1581 aa9.12□□□□□ -0.95
HDAC6-223ENST00000480525 WDR62O43379 1518 aa9.12□□□□□ -0.95
HDAC6-223ENST00000480525 FANCD2Q9BXW9 1451 aa9.12□□□□□ -0.95
HDAC6-223ENST00000480525 CEP164Q9UPV0 1460 aa9.12□□□□□ -0.95
HDAC6-223ENST00000480525 MRC2Q9UBG0 1479 aa9.1□□□□□ -0.95
HDAC6-223ENST00000480525 DNMBPQ6XZF7 1577 aa9.04□□□□□ -0.96
HDAC6-223ENST00000480525 WDR97A6NE52 1622 aa9.04□□□□□ -0.96
HDAC6-223ENST00000480525 URB2Q14146 1524 aaKnown RBP9.01□□□□□ -0.97
HDAC6-223ENST00000480525 SUPT5HO00267 1087 aaKnown RBP9.01□□□□□ -0.97
HDAC6-223ENST00000480525 TOPBP1Q92547 1522 aa9□□□□□ -0.97
HDAC6-223ENST00000480525 BIVM-ERCC5R4GMW8 1640 aa8.98□□□□□ -0.97
HDAC6-223ENST00000480525 IFT140Q96RY7 1462 aa8.96□□□□□ -0.97
HDAC6-223ENST00000480525 TOP2BQ02880 1626 aa8.96□□□□□ -0.98
HDAC6-223ENST00000480525 CUX1P39880 1505 aa8.94□□□□□ -0.98
HDAC6-223ENST00000480525 TARBP1Q13395 1621 aaKnown RBP8.94□□□□□ -0.98
HDAC6-223ENST00000480525 POLA1P09884 1462 aaPredicted RBP8.92□□□□□ -0.98
HDAC6-223ENST00000480525 WRNQ14191 1432 aaPredicted RBP eCLIP8.91□□□□□ -0.98
HDAC6-223ENST00000480525 ABCA10Q8WWZ4 1543 aa8.89□□□□□ -0.99
HDAC6-223ENST00000480525 FGD5Q6ZNL6 1462 aa8.89□□□□□ -0.99
HDAC6-223ENST00000480525 SYNJ1O43426 1573 aa8.86□□□□□ -0.99
HDAC6-223ENST00000480525 EIF4G3O43432 1585 aaKnown RBP8.86□□□□□ -0.99
HDAC6-223ENST00000480525 ABCA5Q8WWZ7 1642 aa8.85□□□□□ -0.99
HDAC6-223ENST00000480525 SOGA1O94964 1423 aa8.84□□□□□ -0.99
HDAC6-223ENST00000480525 MAGI1Q96QZ7 1491 aaPredicted RBP8.82□□□□□ -1
HDAC6-223ENST00000480525 ERICH3Q5RHP9 1530 aa8.81□□□□□ -1
HDAC6-223ENST00000480525 PBRM1Q86U86 1689 aa8.8□□□□□ -1
HDAC6-223ENST00000480525 ZNF608Q9ULD9 1512 aaPredicted RBP8.8□□□□□ -1
HDAC6-223ENST00000480525 GRIN2BQ13224 1484 aa8.79□□□□□ -1
HDAC6-223ENST00000480525 RAD54L2Q9Y4B4 1467 aa8.78□□□□□ -1
HDAC6-223ENST00000480525 GAPVD1Q14C86 1478 aa8.77□□□□□ -1
HDAC6-223ENST00000480525 CUL7Q14999 1698 aa8.75□□□□□ -1.01
HDAC6-223ENST00000480525 SYNJ2O15056 1496 aa8.75□□□□□ -1.01
HDAC6-223ENST00000480525 KIF27Q86VH2 1401 aa8.74□□□□□ -1.01
HDAC6-223ENST00000480525 AQRO60306 1485 aaKnown RBP eCLIP8.74□□□□□ -1.01
HDAC6-223ENST00000480525 ADAMTS12P58397 1594 aa8.73□□□□□ -1.01
HDAC6-223ENST00000480525 CHD1O14646 1710 aa8.72□□□□□ -1.01
HDAC6-223ENST00000480525 TDRD9Q8NDG6 1382 aaKnown RBP8.72□□□□□ -1.01
HDAC6-223ENST00000480525 FHAD1B1AJZ9 1412 aa8.71□□□□□ -1.02
HDAC6-223ENST00000480525 EEA1Q15075 1411 aa8.71□□□□□ -1.02
HDAC6-223ENST00000480525 SNAPC4Q5SXM2 1469 aa8.7□□□□□ -1.02
HDAC6-223ENST00000480525 DNAJC5Q9H3Z4 198 aa8.68□□□□□ -1.02
HDAC6-223ENST00000480525 GRIN2AQ12879 1464 aa8.68□□□□□ -1.02
HDAC6-223ENST00000480525 CLASP1Q7Z460 1538 aa8.68□□□□□ -1.02
HDAC6-223ENST00000480525 NUP160Q12769 1436 aa8.67□□□□□ -1.02
HDAC6-223ENST00000480525 OSCARQ8IYS5 282 aa8.66□□□□□ -1.02
HDAC6-223ENST00000480525 IGF1RP08069 1367 aa8.65□□□□□ -1.02
HDAC6-223ENST00000480525 SHROOM2Q13796 1616 aa8.65□□□□□ -1.03
HDAC6-223ENST00000480525 TRIM41Q8WV44 630 aa8.63□□□□□ -1.03
HDAC6-223ENST00000480525 PRXQ9BXM0 1461 aa8.62□□□□□ -1.03
HDAC6-223ENST00000480525 RUSC2Q8N2Y8 1516 aa8.61□□□□□ -1.03
HDAC6-223ENST00000480525 CEP170Q5SW79 1584 aa8.61□□□□□ -1.03
HDAC6-223ENST00000480525 RAPGEF2Q9Y4G8 1499 aa8.6□□□□□ -1.03
HDAC6-223ENST00000480525 CHMP7Q8WUX9 453 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-223ENST00000480525 CARMIL1Q5VZK9 1371 aa8.6□□□□□ -1.03
HDAC6-223ENST00000480525 KIAA0586Q9BVV6 1533 aa8.59□□□□□ -1.03
HDAC6-223ENST00000480525 KIF21BO75037 1637 aa8.58□□□□□ -1.04
HDAC6-223ENST00000480525 CTTNBP2Q8WZ74 1663 aa8.58□□□□□ -1.04
HDAC6-223ENST00000480525 CHIC1Q5VXU3 224 aa8.57□□□□□ -1.04
HDAC6-223ENST00000480525 ARHGEF11O15085 1522 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms