RNA–Protein interactions for RNA: ENST00000480222.1

SIK3-209, Transcript of SIK family kinase 3, humanhuman

TSL 3

Gene SIK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-209ENST00000480222 NISCHQ9Y2I1 1504 aa29.41■■■□□ 2.3
SIK3-209ENST00000480222 CCDC180Q9P1Z9 1646 aa25.98■■□□□ 1.75
SIK3-209ENST00000480222 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.54
SIK3-209ENST00000480222 ABCC9O60706 1549 aa24.61■■□□□ 1.53
SIK3-209ENST00000480222 DCAF1Q9Y4B6 1507 aa24.45■■□□□ 1.5
SIK3-209ENST00000480222 MYO15BQ96JP2 1530 aa24.31■■□□□ 1.48
SIK3-209ENST00000480222 NACADO15069 1562 aa24.2■■□□□ 1.46
SIK3-209ENST00000480222 DCAF8L2P0C7V8 631 aa24.09■■□□□ 1.45
SIK3-209ENST00000480222 RB1CC1Q8TDY2 1594 aa24.06■■□□□ 1.44
SIK3-209ENST00000480222 SCRIBQ14160 1630 aa23.66■■□□□ 1.38
SIK3-209ENST00000480222 UNC13AQ9UPW8 1703 aa23.53■■□□□ 1.36
SIK3-209ENST00000480222 SHROOM4Q9ULL8 1493 aa23.51■■□□□ 1.35
SIK3-209ENST00000480222 BICRAQ9NZM4 1560 aa23.27■■□□□ 1.32
SIK3-209ENST00000480222 DNAJC5BQ9UF47 199 aa23.22■■□□□ 1.31
SIK3-209ENST00000480222 PABPN1Q86U42 306 aaKnown RBP eCLIP22.99■■□□□ 1.27
SIK3-209ENST00000480222 BAZ1AQ9NRL2 1556 aaPredicted RBP22.8■■□□□ 1.24
SIK3-209ENST00000480222 CECR2Q9BXF3 1484 aa22.77■■□□□ 1.24
SIK3-209ENST00000480222 SMARCA4P51532 1647 aa22.72■■□□□ 1.23
SIK3-209ENST00000480222 MROH2BQ7Z745 1585 aa22.65■■□□□ 1.22
SIK3-209ENST00000480222 RSF1Q96T23 1441 aaPredicted RBP22.62■■□□□ 1.21
SIK3-209ENST00000480222 EIF4G1Q04637 1599 aaKnown RBP22.62■■□□□ 1.21
SIK3-209ENST00000480222 PEG3Q9GZU2 1588 aa22.52■■□□□ 1.2
SIK3-209ENST00000480222 WIZO95785 1651 aa22.46■■□□□ 1.19
SIK3-209ENST00000480222 SMARCA2P51531 1590 aa22.45■■□□□ 1.18
SIK3-209ENST00000480222 SUPT5HO00267 1087 aaKnown RBP22.43■■□□□ 1.18
SIK3-209ENST00000480222 ATAD2BQ9ULI0 1458 aa22.37■■□□□ 1.17
SIK3-209ENST00000480222 CC2D2AQ9P2K1 1620 aa22.34■■□□□ 1.17
SIK3-209ENST00000480222 TOP2AP11388 1531 aaKnown RBP22.32■■□□□ 1.16
SIK3-209ENST00000480222 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
SIK3-209ENST00000480222 NCAPD3P42695 1498 aa22.27■■□□□ 1.16
SIK3-209ENST00000480222 BAZ1BQ9UIG0 1483 aaKnown RBP22.25■■□□□ 1.15
SIK3-209ENST00000480222 CCDC88BA6NC98 1476 aa21.96■■□□□ 1.11
SIK3-209ENST00000480222 PRDM2Q13029 1718 aa21.69■■□□□ 1.06
SIK3-209ENST00000480222 CFTRP13569 1480 aa21.68■■□□□ 1.06
SIK3-209ENST00000480222 LAMC3Q9Y6N6 1575 aa21.63■■□□□ 1.05
SIK3-209ENST00000480222 CADPSQ9ULU8 1353 aa21.62■■□□□ 1.05
SIK3-209ENST00000480222 NESP48681 1621 aa21.47■■□□□ 1.03
SIK3-209ENST00000480222 DNAJC5Q9H3Z4 198 aa21.45■■□□□ 1.02
SIK3-209ENST00000480222 FANCD2Q9BXW9 1451 aa21.4■■□□□ 1.02
SIK3-209ENST00000480222 PDS5BQ9NTI5 1447 aa21.4■■□□□ 1.02
SIK3-209ENST00000480222 ABCC8Q09428 1581 aa21.38■■□□□ 1.01
SIK3-209ENST00000480222 CHIC1Q5VXU3 224 aa21.35■■□□□ 1.01
SIK3-209ENST00000480222 CEP164Q9UPV0 1460 aa21.34■■□□□ 1.01
SIK3-209ENST00000480222 WRNQ14191 1432 aaPredicted RBP eCLIP21.34■■□□□ 1.01
SIK3-209ENST00000480222 KIF21AQ7Z4S6 1674 aa21.33■■□□□ 1
SIK3-209ENST00000480222 CUX2O14529 1486 aa21.3■■□□□ 1
SIK3-209ENST00000480222 BIVM-ERCC5R4GMW8 1640 aa21.29■■□□□ 1
SIK3-209ENST00000480222 TOP2BQ02880 1626 aa21.28■■□□□ 1
SIK3-209ENST00000480222 SYNJ1O43426 1573 aa21.27■■□□□ 1
SIK3-209ENST00000480222 ERCC6Q03468 1493 aa21.26■□□□□ 0.99
SIK3-209ENST00000480222 CUX1P39880 1505 aa21.23■□□□□ 0.99
SIK3-209ENST00000480222 DNMBPQ6XZF7 1577 aa21.23■□□□□ 0.99
SIK3-209ENST00000480222 TRIM41Q8WV44 630 aa21.2■□□□□ 0.98
SIK3-209ENST00000480222 MRC2Q9UBG0 1479 aa21.17■□□□□ 0.98
SIK3-209ENST00000480222 TOPBP1Q92547 1522 aa21.14■□□□□ 0.98
SIK3-209ENST00000480222 URB2Q14146 1524 aaKnown RBP21.14■□□□□ 0.97
SIK3-209ENST00000480222 THOC2Q8NI27 1593 aaKnown RBP21.12■□□□□ 0.97
SIK3-209ENST00000480222 WDR62O43379 1518 aa21.11■□□□□ 0.97
SIK3-209ENST00000480222 FGD5Q6ZNL6 1462 aa21.06■□□□□ 0.96
SIK3-209ENST00000480222 POLA1P09884 1462 aaPredicted RBP21.01■□□□□ 0.95
SIK3-209ENST00000480222 EEA1Q15075 1411 aa20.95■□□□□ 0.94
SIK3-209ENST00000480222 WDR97A6NE52 1622 aa20.94■□□□□ 0.94
SIK3-209ENST00000480222 ABCA10Q8WWZ4 1543 aa20.91■□□□□ 0.94
SIK3-209ENST00000480222 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.93
SIK3-209ENST00000480222 SOGA1O94964 1423 aa20.87■□□□□ 0.93
SIK3-209ENST00000480222 IFT140Q96RY7 1462 aa20.87■□□□□ 0.93
SIK3-209ENST00000480222 RAD54L2Q9Y4B4 1467 aa20.85■□□□□ 0.93
SIK3-209ENST00000480222 KIF27Q86VH2 1401 aa20.85■□□□□ 0.93
SIK3-209ENST00000480222 ABCA5Q8WWZ7 1642 aa20.81■□□□□ 0.92
SIK3-209ENST00000480222 RUSC2Q8N2Y8 1516 aa20.77■□□□□ 0.92
SIK3-209ENST00000480222 EIF4G3O43432 1585 aaKnown RBP20.7■□□□□ 0.9
SIK3-209ENST00000480222 KIF21BO75037 1637 aa20.7■□□□□ 0.9
SIK3-209ENST00000480222 GAPVD1Q14C86 1478 aa20.69■□□□□ 0.9
SIK3-209ENST00000480222 ERICH3Q5RHP9 1530 aa20.69■□□□□ 0.9
SIK3-209ENST00000480222 PBRM1Q86U86 1689 aa20.69■□□□□ 0.9
SIK3-209ENST00000480222 CUL7Q14999 1698 aa20.68■□□□□ 0.9
SIK3-209ENST00000480222 FAM9AQ8IZU1 332 aaPredicted RBP20.68■□□□□ 0.9
SIK3-209ENST00000480222 CSRNP3Q8WYN3 585 aa20.67■□□□□ 0.9
SIK3-209ENST00000480222 ZNF608Q9ULD9 1512 aaPredicted RBP20.65■□□□□ 0.9
SIK3-209ENST00000480222 TDRD9Q8NDG6 1382 aaKnown RBP20.64■□□□□ 0.89
SIK3-209ENST00000480222 GRIN2BQ13224 1484 aa20.62■□□□□ 0.89
SIK3-209ENST00000480222 PRXQ9BXM0 1461 aa20.62■□□□□ 0.89
SIK3-209ENST00000480222 IGF1RP08069 1367 aa20.6■□□□□ 0.89
SIK3-209ENST00000480222 AQRO60306 1485 aaKnown RBP eCLIP20.59■□□□□ 0.89
SIK3-209ENST00000480222 GOLGA3Q08378 1498 aa20.59■□□□□ 0.89
SIK3-209ENST00000480222 ADAMTS12P58397 1594 aa20.56■□□□□ 0.88
SIK3-209ENST00000480222 MAGI1Q96QZ7 1491 aaPredicted RBP20.53■□□□□ 0.88
SIK3-209ENST00000480222 RAPGEF2Q9Y4G8 1499 aa20.52■□□□□ 0.88
SIK3-209ENST00000480222 CARMIL1Q5VZK9 1371 aa20.52■□□□□ 0.88
SIK3-209ENST00000480222 SNAPC4Q5SXM2 1469 aa20.5■□□□□ 0.87
SIK3-209ENST00000480222 FHAD1B1AJZ9 1412 aa20.49■□□□□ 0.87
SIK3-209ENST00000480222 SYNJ2O15056 1496 aa20.42■□□□□ 0.86
SIK3-209ENST00000480222 LOC105371045A0A1W2PR82 267 aa20.4■□□□□ 0.86
SIK3-209ENST00000480222 TNIKQ9UKE5 1360 aa20.4■□□□□ 0.86
SIK3-209ENST00000480222 CTTNBP2Q8WZ74 1663 aa20.38■□□□□ 0.85
SIK3-209ENST00000480222 GRIN2AQ12879 1464 aa20.36■□□□□ 0.85
SIK3-209ENST00000480222 UBTFP17480 764 aaKnown RBP20.33■□□□□ 0.85
SIK3-209ENST00000480222 EHMT2Q96KQ7 1210 aa20.3■□□□□ 0.84
SIK3-209ENST00000480222 CHD1O14646 1710 aa20.3■□□□□ 0.84
SIK3-209ENST00000480222 CEP162Q5TB80 1403 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms