RNA–Protein interactions for RNA: ENST00000480181.1

CLIC3-202, Transcript of chloride intracellular channel 3, humanhuman

TSL 3

Gene CLIC3, Length 794 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC3-202ENST00000480181 NISCHQ9Y2I1 1504 aa52.01■■■■■ 5.92
CLIC3-202ENST00000480181 ABCC9O60706 1549 aa46.89■■■■■ 5.1
CLIC3-202ENST00000480181 CCDC180Q9P1Z9 1646 aa46.79■■■■■ 5.08
CLIC3-202ENST00000480181 RB1CC1Q8TDY2 1594 aa44.67■■■■■ 4.74
CLIC3-202ENST00000480181 NACADO15069 1562 aa44.34■■■■■ 4.69
CLIC3-202ENST00000480181 DNAJC5BQ9UF47 199 aa44.09■■■■■ 4.65
CLIC3-202ENST00000480181 DCAF8L2P0C7V8 631 aa44■■■■■ 4.63
CLIC3-202ENST00000480181 MYO15BQ96JP2 1530 aa43.7■■■■■ 4.59
CLIC3-202ENST00000480181 PABPN1Q86U42 306 aaKnown RBP eCLIP43.62■■■■■ 4.57
CLIC3-202ENST00000480181 UNC13AQ9UPW8 1703 aa43.48■■■■■ 4.55
CLIC3-202ENST00000480181 BICRAQ9NZM4 1560 aa43.24■■■■■ 4.51
CLIC3-202ENST00000480181 ZCCHC6Q5VYS8 1495 aaKnown RBP43.05■■■■■ 4.48
CLIC3-202ENST00000480181 DCAF1Q9Y4B6 1507 aa43.03■■■■■ 4.48
CLIC3-202ENST00000480181 SHROOM4Q9ULL8 1493 aa42.87■■■■■ 4.45
CLIC3-202ENST00000480181 SCRIBQ14160 1630 aa42.53■■■■■ 4.4
CLIC3-202ENST00000480181 CC2D2AQ9P2K1 1620 aa42.37■■■■■ 4.37
CLIC3-202ENST00000480181 CECR2Q9BXF3 1484 aa42.33■■■■■ 4.37
CLIC3-202ENST00000480181 EIF4G1Q04637 1599 aaKnown RBP42.26■■■■■ 4.36
CLIC3-202ENST00000480181 NCAPD3P42695 1498 aa40.9■■■■■ 4.14
CLIC3-202ENST00000480181 DNAJC5Q9H3Z4 198 aa40.81■■■■■ 4.12
CLIC3-202ENST00000480181 ATAD2BQ9ULI0 1458 aa40.7■■■■■ 4.11
CLIC3-202ENST00000480181 SMARCA2P51531 1590 aa40.66■■■■■ 4.1
CLIC3-202ENST00000480181 CUX2O14529 1486 aa40.64■■■■■ 4.1
CLIC3-202ENST00000480181 ERCC6Q03468 1493 aa40.62■■■■■ 4.09
CLIC3-202ENST00000480181 SMARCA4P51532 1647 aa40.59■■■■■ 4.09
CLIC3-202ENST00000480181 HMGXB3Q12766 1538 aa40.58■■■■■ 4.09
CLIC3-202ENST00000480181 BAZ1AQ9NRL2 1556 aaPredicted RBP40.44■■■■■ 4.06
CLIC3-202ENST00000480181 BAZ1BQ9UIG0 1483 aaKnown RBP40.33■■■■■ 4.05
CLIC3-202ENST00000480181 PEG3Q9GZU2 1588 aa40.25■■■■■ 4.03
CLIC3-202ENST00000480181 NESP48681 1621 aa40.18■■■■■ 4.02
CLIC3-202ENST00000480181 LAMC3Q9Y6N6 1575 aa40.02■■■■■ 4
CLIC3-202ENST00000480181 MROH2BQ7Z745 1585 aa40■■■■□ 3.99
CLIC3-202ENST00000480181 PDS5BQ9NTI5 1447 aa39.86■■■■□ 3.97
CLIC3-202ENST00000480181 THOC2Q8NI27 1593 aaKnown RBP39.85■■■■□ 3.97
CLIC3-202ENST00000480181 KIF21AQ7Z4S6 1674 aa39.67■■■■□ 3.94
CLIC3-202ENST00000480181 CADPSQ9ULU8 1353 aa39.66■■■■□ 3.94
CLIC3-202ENST00000480181 WIZO95785 1651 aa39.49■■■■□ 3.91
CLIC3-202ENST00000480181 MRC2Q9UBG0 1479 aa39.44■■■■□ 3.9
CLIC3-202ENST00000480181 WDR62O43379 1518 aa39.33■■■■□ 3.89
CLIC3-202ENST00000480181 CEP164Q9UPV0 1460 aa39.26■■■■□ 3.88
CLIC3-202ENST00000480181 FANCD2Q9BXW9 1451 aa39.17■■■■□ 3.86
CLIC3-202ENST00000480181 RSF1Q96T23 1441 aaPredicted RBP39.14■■■■□ 3.86
CLIC3-202ENST00000480181 CFTRP13569 1480 aa39.14■■■■□ 3.86
CLIC3-202ENST00000480181 TOP2AP11388 1531 aaKnown RBP39.07■■■■□ 3.84
CLIC3-202ENST00000480181 TRIM41Q8WV44 630 aa38.88■■■■□ 3.81
CLIC3-202ENST00000480181 URB2Q14146 1524 aaKnown RBP38.8■■■■□ 3.8
CLIC3-202ENST00000480181 OSCARQ8IYS5 282 aa38.77■■■■□ 3.8
CLIC3-202ENST00000480181 PRDM2Q13029 1718 aa38.7■■■■□ 3.79
CLIC3-202ENST00000480181 CCDC88BA6NC98 1476 aa38.6■■■■□ 3.77
CLIC3-202ENST00000480181 IFT140Q96RY7 1462 aa38.51■■■■□ 3.76
CLIC3-202ENST00000480181 ABCC8Q09428 1581 aa38.44■■■■□ 3.74
CLIC3-202ENST00000480181 TOPBP1Q92547 1522 aa38.38■■■■□ 3.74
CLIC3-202ENST00000480181 ZNF608Q9ULD9 1512 aaPredicted RBP38.33■■■■□ 3.73
CLIC3-202ENST00000480181 DNMBPQ6XZF7 1577 aa38.26■■■■□ 3.72
CLIC3-202ENST00000480181 RIMBP3CA6NJZ7 1639 aa38.15■■■■□ 3.7
CLIC3-202ENST00000480181 RIMBP3BA6NNM3 1639 aa38.15■■■■□ 3.7
CLIC3-202ENST00000480181 RIMBP3Q9UFD9 1639 aa38.15■■■■□ 3.7
CLIC3-202ENST00000480181 EIF4G3O43432 1585 aaKnown RBP38.14■■■■□ 3.7
CLIC3-202ENST00000480181 ARHGEF11O15085 1522 aa38.04■■■■□ 3.68
CLIC3-202ENST00000480181 TARBP1Q13395 1621 aaKnown RBP38.03■■■■□ 3.68
CLIC3-202ENST00000480181 AQRO60306 1485 aaKnown RBP eCLIP37.99■■■■□ 3.67
CLIC3-202ENST00000480181 POLA1P09884 1462 aaPredicted RBP37.97■■■■□ 3.67
CLIC3-202ENST00000480181 CHD1O14646 1710 aa37.87■■■■□ 3.65
CLIC3-202ENST00000480181 FBLN2P98095 1184 aa37.86■■■■□ 3.65
CLIC3-202ENST00000480181 SOGA1O94964 1423 aa37.86■■■■□ 3.65
CLIC3-202ENST00000480181 CYB5RLQ6IPT4 315 aa37.8■■■■□ 3.64
CLIC3-202ENST00000480181 RAD54L2Q9Y4B4 1467 aa37.79■■■■□ 3.64
CLIC3-202ENST00000480181 WDR97A6NE52 1622 aa37.79■■■■□ 3.64
CLIC3-202ENST00000480181 TDRD9Q8NDG6 1382 aaKnown RBP37.74■■■■□ 3.63
CLIC3-202ENST00000480181 FGD5Q6ZNL6 1462 aa37.71■■■■□ 3.63
CLIC3-202ENST00000480181 SNAPC4Q5SXM2 1469 aa37.62■■■■□ 3.61
CLIC3-202ENST00000480181 ARAP1Q96P48 1450 aa37.62■■■■□ 3.61
CLIC3-202ENST00000480181 CUX1P39880 1505 aa37.61■■■■□ 3.61
CLIC3-202ENST00000480181 MAGI1Q96QZ7 1491 aaPredicted RBP37.6■■■■□ 3.61
CLIC3-202ENST00000480181 CHMP7Q8WUX9 453 aaPredicted RBP37.6■■■■□ 3.61
CLIC3-202ENST00000480181 GRIN2BQ13224 1484 aa37.57■■■■□ 3.6
CLIC3-202ENST00000480181 SYNJ1O43426 1573 aa37.52■■■■□ 3.6
CLIC3-202ENST00000480181 TRHP20396 242 aaPredicted RBP37.49■■■■□ 3.59
CLIC3-202ENST00000480181 CLASP1Q7Z460 1538 aa37.47■■■■□ 3.59
CLIC3-202ENST00000480181 SYNJ2O15056 1496 aa37.45■■■■□ 3.59
CLIC3-202ENST00000480181 GAPVD1Q14C86 1478 aa37.39■■■■□ 3.58
CLIC3-202ENST00000480181 ABCA10Q8WWZ4 1543 aa37.31■■■■□ 3.56
CLIC3-202ENST00000480181 PBRM1Q86U86 1689 aa37.31■■■■□ 3.56
CLIC3-202ENST00000480181 SUPT5HO00267 1087 aaKnown RBP37.26■■■■□ 3.56
CLIC3-202ENST00000480181 ABCA5Q8WWZ7 1642 aa37.21■■■■□ 3.55
CLIC3-202ENST00000480181 WRNQ14191 1432 aaPredicted RBP eCLIP37.18■■■■□ 3.54
CLIC3-202ENST00000480181 GRIN2AQ12879 1464 aa37.04■■■■□ 3.52
CLIC3-202ENST00000480181 TOP2BQ02880 1626 aa37.01■■■■□ 3.52
CLIC3-202ENST00000480181 BIVM-ERCC5R4GMW8 1640 aa36.99■■■■□ 3.51
CLIC3-202ENST00000480181 ADAMTS12P58397 1594 aa36.95■■■■□ 3.51
CLIC3-202ENST00000480181 FHAD1B1AJZ9 1412 aa36.93■■■■□ 3.5
CLIC3-202ENST00000480181 NUP160Q12769 1436 aa36.93■■■■□ 3.5
CLIC3-202ENST00000480181 ERICH3Q5RHP9 1530 aa36.88■■■■□ 3.49
CLIC3-202ENST00000480181 CEP170Q5SW79 1584 aa36.84■■■■□ 3.49
CLIC3-202ENST00000480181 ERCC6L2Q5T890 1561 aa36.77■■■■□ 3.48
CLIC3-202ENST00000480181 SHROOM2Q13796 1616 aa36.76■■■■□ 3.48
CLIC3-202ENST00000480181 AEBP2Q6ZN18 517 aaPredicted RBP36.61■■■■□ 3.45
CLIC3-202ENST00000480181 JPH4Q96JJ6 628 aa36.6■■■■□ 3.45
CLIC3-202ENST00000480181 PRG4Q92954 1404 aaPredicted RBP36.59■■■■□ 3.45
CLIC3-202ENST00000480181 RUSC2Q8N2Y8 1516 aa36.43■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms