RNA–Protein interactions for RNA: ENST00000480127.1

COL17A1-205, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 3

Gene COL17A1, Length 420 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-205ENST00000480127 NISCHQ9Y2I1 1504 aa17.93■□□□□ 0.46
COL17A1-205ENST00000480127 ABCC9O60706 1549 aa16.39■□□□□ 0.21
COL17A1-205ENST00000480127 CCDC180Q9P1Z9 1646 aa16.14■□□□□ 0.17
COL17A1-205ENST00000480127 DNAJC5BQ9UF47 199 aa15.61■□□□□ 0.09
COL17A1-205ENST00000480127 RB1CC1Q8TDY2 1594 aa15.48■□□□□ 0.07
COL17A1-205ENST00000480127 NACADO15069 1562 aa15.33■□□□□ 0.05
COL17A1-205ENST00000480127 PABPN1Q86U42 306 aaKnown RBP eCLIP15.23■□□□□ 0.03
COL17A1-205ENST00000480127 DCAF8L2P0C7V8 631 aa15.2■□□□□ 0.02
COL17A1-205ENST00000480127 UNC13AQ9UPW8 1703 aa15.12■□□□□ 0.01
COL17A1-205ENST00000480127 BICRAQ9NZM4 1560 aa15.07■□□□□ 0
COL17A1-205ENST00000480127 MYO15BQ96JP2 1530 aa15.07■□□□□ 0
COL17A1-205ENST00000480127 ZCCHC6Q5VYS8 1495 aaKnown RBP14.81□□□□□ -0.04
COL17A1-205ENST00000480127 SHROOM4Q9ULL8 1493 aa14.81□□□□□ -0.04
COL17A1-205ENST00000480127 DCAF1Q9Y4B6 1507 aa14.79□□□□□ -0.04
COL17A1-205ENST00000480127 CC2D2AQ9P2K1 1620 aa14.78□□□□□ -0.04
COL17A1-205ENST00000480127 CECR2Q9BXF3 1484 aa14.77□□□□□ -0.04
COL17A1-205ENST00000480127 SCRIBQ14160 1630 aa14.7□□□□□ -0.06
COL17A1-205ENST00000480127 EIF4G1Q04637 1599 aaKnown RBP14.7□□□□□ -0.06
COL17A1-205ENST00000480127 DNAJC5Q9H3Z4 198 aa14.46□□□□□ -0.09
COL17A1-205ENST00000480127 CUX2O14529 1486 aa14.19□□□□□ -0.14
COL17A1-205ENST00000480127 NCAPD3P42695 1498 aa14.18□□□□□ -0.14
COL17A1-205ENST00000480127 ERCC6Q03468 1493 aa14.12□□□□□ -0.15
COL17A1-205ENST00000480127 ATAD2BQ9ULI0 1458 aa14.11□□□□□ -0.15
COL17A1-205ENST00000480127 HMGXB3Q12766 1538 aa14.03□□□□□ -0.16
COL17A1-205ENST00000480127 NESP48681 1621 aa14.02□□□□□ -0.16
COL17A1-205ENST00000480127 SMARCA2P51531 1590 aa14.02□□□□□ -0.16
COL17A1-205ENST00000480127 SMARCA4P51532 1647 aa14.01□□□□□ -0.17
COL17A1-205ENST00000480127 BAZ1BQ9UIG0 1483 aaKnown RBP13.93□□□□□ -0.18
COL17A1-205ENST00000480127 THOC2Q8NI27 1593 aaKnown RBP13.91□□□□□ -0.18
COL17A1-205ENST00000480127 BAZ1AQ9NRL2 1556 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-205ENST00000480127 PEG3Q9GZU2 1588 aa13.89□□□□□ -0.19
COL17A1-205ENST00000480127 LAMC3Q9Y6N6 1575 aa13.86□□□□□ -0.19
COL17A1-205ENST00000480127 MROH2BQ7Z745 1585 aa13.82□□□□□ -0.2
COL17A1-205ENST00000480127 PDS5BQ9NTI5 1447 aa13.8□□□□□ -0.2
COL17A1-205ENST00000480127 KIF21AQ7Z4S6 1674 aa13.79□□□□□ -0.2
COL17A1-205ENST00000480127 CADPSQ9ULU8 1353 aa13.73□□□□□ -0.21
COL17A1-205ENST00000480127 TRIM41Q8WV44 630 aa13.71□□□□□ -0.21
COL17A1-205ENST00000480127 MRC2Q9UBG0 1479 aa13.69□□□□□ -0.22
COL17A1-205ENST00000480127 WDR62O43379 1518 aa13.67□□□□□ -0.22
COL17A1-205ENST00000480127 WIZO95785 1651 aa13.63□□□□□ -0.23
COL17A1-205ENST00000480127 CEP164Q9UPV0 1460 aa13.59□□□□□ -0.23
COL17A1-205ENST00000480127 FANCD2Q9BXW9 1451 aa13.56□□□□□ -0.24
COL17A1-205ENST00000480127 CFTRP13569 1480 aa13.53□□□□□ -0.24
COL17A1-205ENST00000480127 OSCARQ8IYS5 282 aa13.52□□□□□ -0.25
COL17A1-205ENST00000480127 URB2Q14146 1524 aaKnown RBP13.48□□□□□ -0.25
COL17A1-205ENST00000480127 RSF1Q96T23 1441 aaPredicted RBP13.46□□□□□ -0.26
COL17A1-205ENST00000480127 TOP2AP11388 1531 aaKnown RBP13.44□□□□□ -0.26
COL17A1-205ENST00000480127 RIMBP3CA6NJZ7 1639 aa13.35□□□□□ -0.27
COL17A1-205ENST00000480127 RIMBP3BA6NNM3 1639 aa13.35□□□□□ -0.27
COL17A1-205ENST00000480127 RIMBP3Q9UFD9 1639 aa13.35□□□□□ -0.27
COL17A1-205ENST00000480127 ZNF608Q9ULD9 1512 aaPredicted RBP13.35□□□□□ -0.27
COL17A1-205ENST00000480127 IFT140Q96RY7 1462 aa13.33□□□□□ -0.28
COL17A1-205ENST00000480127 CCDC88BA6NC98 1476 aa13.31□□□□□ -0.28
COL17A1-205ENST00000480127 PRDM2Q13029 1718 aa13.31□□□□□ -0.28
COL17A1-205ENST00000480127 ARHGEF11O15085 1522 aa13.3□□□□□ -0.28
COL17A1-205ENST00000480127 TOPBP1Q92547 1522 aa13.29□□□□□ -0.28
COL17A1-205ENST00000480127 EIF4G3O43432 1585 aaKnown RBP13.24□□□□□ -0.29
COL17A1-205ENST00000480127 ABCC8Q09428 1581 aa13.23□□□□□ -0.29
COL17A1-205ENST00000480127 CYB5RLQ6IPT4 315 aa13.22□□□□□ -0.29
COL17A1-205ENST00000480127 DNMBPQ6XZF7 1577 aa13.2□□□□□ -0.3
COL17A1-205ENST00000480127 AQRO60306 1485 aaKnown RBP eCLIP13.2□□□□□ -0.3
COL17A1-205ENST00000480127 TARBP1Q13395 1621 aaKnown RBP13.19□□□□□ -0.3
COL17A1-205ENST00000480127 ARAP1Q96P48 1450 aa13.16□□□□□ -0.3
COL17A1-205ENST00000480127 CHD1O14646 1710 aa13.16□□□□□ -0.3
COL17A1-205ENST00000480127 POLA1P09884 1462 aaPredicted RBP13.14□□□□□ -0.31
COL17A1-205ENST00000480127 FBLN2P98095 1184 aa13.13□□□□□ -0.31
COL17A1-205ENST00000480127 TRHP20396 242 aaPredicted RBP13.12□□□□□ -0.31
COL17A1-205ENST00000480127 RAD54L2Q9Y4B4 1467 aa13.1□□□□□ -0.31
COL17A1-205ENST00000480127 TDRD9Q8NDG6 1382 aaKnown RBP13.08□□□□□ -0.31
COL17A1-205ENST00000480127 SOGA1O94964 1423 aa13.08□□□□□ -0.32
COL17A1-205ENST00000480127 SNAPC4Q5SXM2 1469 aa13.04□□□□□ -0.32
COL17A1-205ENST00000480127 CLASP1Q7Z460 1538 aa13.04□□□□□ -0.32
COL17A1-205ENST00000480127 FGD5Q6ZNL6 1462 aa13.03□□□□□ -0.32
COL17A1-205ENST00000480127 WDR97A6NE52 1622 aa13.02□□□□□ -0.33
COL17A1-205ENST00000480127 CHMP7Q8WUX9 453 aaPredicted RBP13□□□□□ -0.33
COL17A1-205ENST00000480127 SYNJ1O43426 1573 aa12.99□□□□□ -0.33
COL17A1-205ENST00000480127 MAGI1Q96QZ7 1491 aaPredicted RBP12.99□□□□□ -0.33
COL17A1-205ENST00000480127 CUX1P39880 1505 aa12.98□□□□□ -0.33
COL17A1-205ENST00000480127 GRIN2BQ13224 1484 aa12.98□□□□□ -0.33
COL17A1-205ENST00000480127 SYNJ2O15056 1496 aa12.96□□□□□ -0.34
COL17A1-205ENST00000480127 GAPVD1Q14C86 1478 aa12.91□□□□□ -0.34
COL17A1-205ENST00000480127 PBRM1Q86U86 1689 aa12.89□□□□□ -0.35
COL17A1-205ENST00000480127 AEBP2Q6ZN18 517 aaPredicted RBP12.88□□□□□ -0.35
COL17A1-205ENST00000480127 ABCA10Q8WWZ4 1543 aa12.87□□□□□ -0.35
COL17A1-205ENST00000480127 ABCA5Q8WWZ7 1642 aa12.86□□□□□ -0.35
COL17A1-205ENST00000480127 ERCC6L2Q5T890 1561 aa12.84□□□□□ -0.35
COL17A1-205ENST00000480127 GRIN2AQ12879 1464 aa12.82□□□□□ -0.36
COL17A1-205ENST00000480127 NUP160Q12769 1436 aa12.79□□□□□ -0.36
COL17A1-205ENST00000480127 CEP170Q5SW79 1584 aa12.78□□□□□ -0.36
COL17A1-205ENST00000480127 ADAMTS12P58397 1594 aa12.77□□□□□ -0.36
COL17A1-205ENST00000480127 WRNQ14191 1432 aaPredicted RBP eCLIP12.76□□□□□ -0.37
COL17A1-205ENST00000480127 SHROOM2Q13796 1616 aa12.75□□□□□ -0.37
COL17A1-205ENST00000480127 FHAD1B1AJZ9 1412 aa12.74□□□□□ -0.37
COL17A1-205ENST00000480127 TOP2BQ02880 1626 aa12.7□□□□□ -0.38
COL17A1-205ENST00000480127 BIVM-ERCC5R4GMW8 1640 aa12.7□□□□□ -0.38
COL17A1-205ENST00000480127 ERICH3Q5RHP9 1530 aa12.69□□□□□ -0.38
COL17A1-205ENST00000480127 SUPT5HO00267 1087 aaKnown RBP12.69□□□□□ -0.38
COL17A1-205ENST00000480127 PRG4Q92954 1404 aaPredicted RBP12.68□□□□□ -0.38
COL17A1-205ENST00000480127 KIF13AQ9H1H9 1805 aa12.67□□□□□ -0.38
COL17A1-205ENST00000480127 JPH4Q96JJ6 628 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 140.6 ms