RNA–Protein interactions for RNA: ENST00000479894.1

HDLBP-238, Transcript of high density lipoprotein binding protein, human

TSL 5

Gene HDLBP, Length 840 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDLBP-238	ENST00000479894	NISCH	Q9Y2I1	1504 aa		39.8	■■■■□ 3.96
HDLBP-238	ENST00000479894	ABCC9	O60706	1549 aa		36.7	■■■■□ 3.47
HDLBP-238	ENST00000479894	CCDC180	Q9P1Z9	1646 aa		36.16	■■■■□ 3.38
HDLBP-238	ENST00000479894	DNAJC5B	Q9UF47	199 aa		35.07	■■■■□ 3.2
HDLBP-238	ENST00000479894	RB1CC1	Q8TDY2	1594 aa		34.73	■■■■□ 3.15
HDLBP-238	ENST00000479894	NACAD	O15069	1562 aa		34.32	■■■■□ 3.09
HDLBP-238	ENST00000479894	UNC13A	Q9UPW8	1703 aa		34	■■■■□ 3.03
HDLBP-238	ENST00000479894	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.99	■■■■□ 3.03
HDLBP-238	ENST00000479894	DCAF8L2	P0C7V8	631 aa		33.74	■■■□□ 2.99
HDLBP-238	ENST00000479894	BICRA	Q9NZM4	1560 aa		33.72	■■■□□ 2.99
HDLBP-238	ENST00000479894	MYO15B	Q96JP2	1530 aa		33.66	■■■□□ 2.98
HDLBP-238	ENST00000479894	SHROOM4	Q9ULL8	1493 aa		33.31	■■■□□ 2.92
HDLBP-238	ENST00000479894	CC2D2A	Q9P2K1	1620 aa		33.2	■■■□□ 2.9
HDLBP-238	ENST00000479894	CECR2	Q9BXF3	1484 aa		33.19	■■■□□ 2.9
HDLBP-238	ENST00000479894	EIF4G1	Q04637	1599 aa	Known RBP	32.96	■■■□□ 2.87
HDLBP-238	ENST00000479894	DCAF1	Q9Y4B6	1507 aa		32.92	■■■□□ 2.86
HDLBP-238	ENST00000479894	DNAJC5	Q9H3Z4	198 aa		32.86	■■■□□ 2.85
HDLBP-238	ENST00000479894	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.83	■■■□□ 2.85
HDLBP-238	ENST00000479894	SCRIB	Q14160	1630 aa		32.74	■■■□□ 2.83
HDLBP-238	ENST00000479894	CUX2	O14529	1486 aa		32.08	■■■□□ 2.73
HDLBP-238	ENST00000479894	ERCC6	Q03468	1493 aa		31.78	■■■□□ 2.68
HDLBP-238	ENST00000479894	NCAPD3	P42695	1498 aa		31.66	■■■□□ 2.66
HDLBP-238	ENST00000479894	ATAD2B	Q9ULI0	1458 aa		31.42	■■■□□ 2.62
HDLBP-238	ENST00000479894	HMGXB3	Q12766	1538 aa		31.39	■■■□□ 2.61
HDLBP-238	ENST00000479894	SMARCA2	P51531	1590 aa		31.35	■■■□□ 2.61
HDLBP-238	ENST00000479894	NES	P48681	1621 aa		31.31	■■■□□ 2.6
HDLBP-238	ENST00000479894	THOC2	Q8NI27	1593 aa	Known RBP	31.25	■■■□□ 2.59
HDLBP-238	ENST00000479894	SMARCA4	P51532	1647 aa		31.23	■■■□□ 2.59
HDLBP-238	ENST00000479894	LAMC3	Q9Y6N6	1575 aa		31.11	■■■□□ 2.57
HDLBP-238	ENST00000479894	BAZ1B	Q9UIG0	1483 aa	Known RBP	31.07	■■■□□ 2.56
HDLBP-238	ENST00000479894	PEG3	Q9GZU2	1588 aa		30.99	■■■□□ 2.55
HDLBP-238	ENST00000479894	KIF21A	Q7Z4S6	1674 aa		30.99	■■■□□ 2.55
HDLBP-238	ENST00000479894	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.97	■■■□□ 2.55
HDLBP-238	ENST00000479894	TRIM41	Q8WV44	630 aa		30.97	■■■□□ 2.55
HDLBP-238	ENST00000479894	PDS5B	Q9NTI5	1447 aa		30.9	■■■□□ 2.54
HDLBP-238	ENST00000479894	MRC2	Q9UBG0	1479 aa		30.67	■■■□□ 2.5
HDLBP-238	ENST00000479894	WDR62	O43379	1518 aa		30.66	■■■□□ 2.5
HDLBP-238	ENST00000479894	CADPS	Q9ULU8	1353 aa		30.63	■■■□□ 2.49
HDLBP-238	ENST00000479894	MROH2B	Q7Z745	1585 aa		30.62	■■■□□ 2.49
HDLBP-238	ENST00000479894	OSCAR	Q8IYS5	282 aa		30.41	■■■□□ 2.46
HDLBP-238	ENST00000479894	CEP164	Q9UPV0	1460 aa		30.39	■■■□□ 2.46
HDLBP-238	ENST00000479894	FANCD2	Q9BXW9	1451 aa		30.27	■■■□□ 2.44
HDLBP-238	ENST00000479894	WIZ	O95785	1651 aa		30.23	■■■□□ 2.43
HDLBP-238	ENST00000479894	CFTR	P13569	1480 aa		30.14	■■■□□ 2.42
HDLBP-238	ENST00000479894	RIMBP3C	A6NJZ7	1639 aa		30.14	■■■□□ 2.41
HDLBP-238	ENST00000479894	RIMBP3B	A6NNM3	1639 aa		30.14	■■■□□ 2.41
HDLBP-238	ENST00000479894	RIMBP3	Q9UFD9	1639 aa		30.14	■■■□□ 2.41
HDLBP-238	ENST00000479894	URB2	Q14146	1524 aa	Known RBP	30.06	■■■□□ 2.4
HDLBP-238	ENST00000479894	ARHGEF11	O15085	1522 aa		29.94	■■■□□ 2.38
HDLBP-238	ENST00000479894	PRDM2	Q13029	1718 aa		29.91	■■■□□ 2.38
HDLBP-238	ENST00000479894	IFT140	Q96RY7	1462 aa		29.84	■■■□□ 2.37
HDLBP-238	ENST00000479894	TOP2A	P11388	1531 aa	Known RBP	29.82	■■■□□ 2.36
HDLBP-238	ENST00000479894	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.79	■■■□□ 2.36
HDLBP-238	ENST00000479894	RSF1	Q96T23	1441 aa	Predicted RBP	29.7	■■■□□ 2.34
HDLBP-238	ENST00000479894	CYB5RL	Q6IPT4	315 aa		29.69	■■■□□ 2.34
HDLBP-238	ENST00000479894	EIF4G3	O43432	1585 aa	Known RBP	29.65	■■■□□ 2.34
HDLBP-238	ENST00000479894	TOPBP1	Q92547	1522 aa		29.62	■■■□□ 2.33
HDLBP-238	ENST00000479894	CHD1	O14646	1710 aa		29.61	■■■□□ 2.33
HDLBP-238	ENST00000479894	TRH	P20396	242 aa	Predicted RBP	29.59	■■■□□ 2.33
HDLBP-238	ENST00000479894	ABCC8	Q09428	1581 aa		29.59	■■■□□ 2.33
HDLBP-238	ENST00000479894	ARAP1	Q96P48	1450 aa		29.58	■■■□□ 2.33
HDLBP-238	ENST00000479894	DNMBP	Q6XZF7	1577 aa		29.48	■■■□□ 2.31
HDLBP-238	ENST00000479894	TARBP1	Q13395	1621 aa	Known RBP	29.46	■■■□□ 2.31
HDLBP-238	ENST00000479894	CCDC88B	A6NC98	1476 aa		29.44	■■■□□ 2.3
HDLBP-238	ENST00000479894	AQR	O60306	1485 aa	Known RBP eCLIP	29.41	■■■□□ 2.3	4e-8	■■■■□ 24.4
HDLBP-238	ENST00000479894	AEBP2	Q6ZN18	517 aa	Predicted RBP	29.32	■■■□□ 2.28
HDLBP-238	ENST00000479894	FBLN2	P98095	1184 aa		29.31	■■■□□ 2.28
HDLBP-238	ENST00000479894	POLA1	P09884	1462 aa	Predicted RBP	29.27	■■■□□ 2.28
HDLBP-238	ENST00000479894	CLASP1	Q7Z460	1538 aa		29.23	■■■□□ 2.27
HDLBP-238	ENST00000479894	WDR97	A6NE52	1622 aa		29.2	■■■□□ 2.27
HDLBP-238	ENST00000479894	SYNJ1	O43426	1573 aa		29.17	■■■□□ 2.26
HDLBP-238	ENST00000479894	SNAPC4	Q5SXM2	1469 aa		29.12	■■■□□ 2.25
HDLBP-238	ENST00000479894	RAD54L2	Q9Y4B4	1467 aa		29.11	■■■□□ 2.25
HDLBP-238	ENST00000479894	SOGA1	O94964	1423 aa		29.1	■■■□□ 2.25
HDLBP-238	ENST00000479894	TDRD9	Q8NDG6	1382 aa	Known RBP	29.09	■■■□□ 2.25
HDLBP-238	ENST00000479894	MAGI1	Q96QZ7	1491 aa	Predicted RBP	29.09	■■■□□ 2.25
HDLBP-238	ENST00000479894	CHMP7	Q8WUX9	453 aa	Predicted RBP	29.04	■■■□□ 2.24
HDLBP-238	ENST00000479894	SYNJ2	O15056	1496 aa		28.97	■■■□□ 2.23
HDLBP-238	ENST00000479894	GRIN2B	Q13224	1484 aa		28.97	■■■□□ 2.23
HDLBP-238	ENST00000479894	FGD5	Q6ZNL6	1462 aa		28.96	■■■□□ 2.23
HDLBP-238	ENST00000479894	GAPVD1	Q14C86	1478 aa		28.93	■■■□□ 2.22
HDLBP-238	ENST00000479894	PBRM1	Q86U86	1689 aa		28.86	■■■□□ 2.21
HDLBP-238	ENST00000479894	CUX1	P39880	1505 aa		28.81	■■■□□ 2.2
HDLBP-238	ENST00000479894	ABCA5	Q8WWZ7	1642 aa		28.68	■■■□□ 2.18
HDLBP-238	ENST00000479894	ERCC6L2	Q5T890	1561 aa		28.64	■■■□□ 2.18
HDLBP-238	ENST00000479894	ABCA10	Q8WWZ4	1543 aa		28.64	■■■□□ 2.17
HDLBP-238	ENST00000479894	KIF13A	Q9H1H9	1805 aa		28.62	■■■□□ 2.17
HDLBP-238	ENST00000479894	GRIN2A	Q12879	1464 aa		28.59	■■■□□ 2.17
HDLBP-238	ENST00000479894	CEP170	Q5SW79	1584 aa		28.59	■■■□□ 2.17
HDLBP-238	ENST00000479894	SHROOM2	Q13796	1616 aa		28.55	■■■□□ 2.16
HDLBP-238	ENST00000479894	NUP160	Q12769	1436 aa		28.55	■■■□□ 2.16
HDLBP-238	ENST00000479894	ADAMTS12	P58397	1594 aa		28.5	■■■□□ 2.15
HDLBP-238	ENST00000479894	FHAD1	B1AJZ9	1412 aa		28.37	■■■□□ 2.13
HDLBP-238	ENST00000479894	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.34	■■■□□ 2.13
HDLBP-238	ENST00000479894	ABCC10	Q5T3U5	1492 aa		28.31	■■■□□ 2.12
HDLBP-238	ENST00000479894	ERICH3	Q5RHP9	1530 aa		28.28	■■■□□ 2.12
HDLBP-238	ENST00000479894	PRG4	Q92954	1404 aa	Predicted RBP	28.27	■■■□□ 2.12
HDLBP-238	ENST00000479894	MAPKBP1	O60336	1514 aa		28.27	■■■□□ 2.12
HDLBP-238	ENST00000479894	FAM69C	Q0P6D2	419 aa		28.24	■■■□□ 2.11
HDLBP-238	ENST00000479894	BIVM-ERCC5	R4GMW8	1640 aa		28.24	■■■□□ 2.11

Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms