RNA–Protein interactions for RNA: ENST00000479660.1

CLDN18-203, Transcript of claudin 18, humanhuman

TSL 2

Gene CLDN18, Length 2,039 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN18-203ENST00000479660 NISCHQ9Y2I1 1504 aa32.4■■■□□ 2.78
CLDN18-203ENST00000479660 CCDC180Q9P1Z9 1646 aa28.15■■■□□ 2.1
CLDN18-203ENST00000479660 ZCCHC6Q5VYS8 1495 aaKnown RBP27.22■■□□□ 1.95
CLDN18-203ENST00000479660 DCAF8L2P0C7V8 631 aa26.89■■□□□ 1.9
CLDN18-203ENST00000479660 DCAF1Q9Y4B6 1507 aa26.75■■□□□ 1.87
CLDN18-203ENST00000479660 ABCC9O60706 1549 aa26.66■■□□□ 1.86
CLDN18-203ENST00000479660 SHROOM4Q9ULL8 1493 aa26.59■■□□□ 1.85
CLDN18-203ENST00000479660 MYO15BQ96JP2 1530 aa26.4■■□□□ 1.82
CLDN18-203ENST00000479660 NACADO15069 1562 aa26.24■■□□□ 1.79
CLDN18-203ENST00000479660 RB1CC1Q8TDY2 1594 aa26■■□□□ 1.75
CLDN18-203ENST00000479660 SCRIBQ14160 1630 aa25.97■■□□□ 1.75
CLDN18-203ENST00000479660 SUPT5HO00267 1087 aaKnown RBP25.64■■□□□ 1.7
CLDN18-203ENST00000479660 UNC13AQ9UPW8 1703 aa25.46■■□□□ 1.67
CLDN18-203ENST00000479660 PABPN1Q86U42 306 aaKnown RBP eCLIP25.22■■□□□ 1.63
CLDN18-203ENST00000479660 BICRAQ9NZM4 1560 aa25.21■■□□□ 1.63
CLDN18-203ENST00000479660 CECR2Q9BXF3 1484 aa25.2■■□□□ 1.63
CLDN18-203ENST00000479660 RSF1Q96T23 1441 aaPredicted RBP25.19■■□□□ 1.62
CLDN18-203ENST00000479660 MROH2BQ7Z745 1585 aa25.05■■□□□ 1.6
CLDN18-203ENST00000479660 BAZ1AQ9NRL2 1556 aaPredicted RBP25.01■■□□□ 1.59
CLDN18-203ENST00000479660 SMARCA4P51532 1647 aa24.87■■□□□ 1.57
CLDN18-203ENST00000479660 WIZO95785 1651 aa24.85■■□□□ 1.57
CLDN18-203ENST00000479660 TOP2AP11388 1531 aaKnown RBP24.56■■□□□ 1.52
CLDN18-203ENST00000479660 CHIC1Q5VXU3 224 aa24.55■■□□□ 1.52
CLDN18-203ENST00000479660 PEG3Q9GZU2 1588 aa24.55■■□□□ 1.52
CLDN18-203ENST00000479660 ATAD2BQ9ULI0 1458 aa24.48■■□□□ 1.51
CLDN18-203ENST00000479660 EIF4G1Q04637 1599 aaKnown RBP24.47■■□□□ 1.51
CLDN18-203ENST00000479660 SMARCA2P51531 1590 aa24.44■■□□□ 1.5
CLDN18-203ENST00000479660 CCDC88BA6NC98 1476 aa24.36■■□□□ 1.49
CLDN18-203ENST00000479660 BAZ1BQ9UIG0 1483 aaKnown RBP24.35■■□□□ 1.49
CLDN18-203ENST00000479660 NCAPD3P42695 1498 aa24.25■■□□□ 1.47
CLDN18-203ENST00000479660 HMGXB3Q12766 1538 aa24.18■■□□□ 1.46
CLDN18-203ENST00000479660 TRIM41Q8WV44 630 aa24.1■■□□□ 1.45
CLDN18-203ENST00000479660 CC2D2AQ9P2K1 1620 aa24.09■■□□□ 1.45
CLDN18-203ENST00000479660 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
CLDN18-203ENST00000479660 CFTRP13569 1480 aa23.74■■□□□ 1.39
CLDN18-203ENST00000479660 WRNQ14191 1432 aaPredicted RBP eCLIP23.72■■□□□ 1.39
CLDN18-203ENST00000479660 FAM9AQ8IZU1 332 aaPredicted RBP23.68■■□□□ 1.38
CLDN18-203ENST00000479660 CADPSQ9ULU8 1353 aa23.66■■□□□ 1.38
CLDN18-203ENST00000479660 LOC105371045A0A1W2PR82 267 aa23.66■■□□□ 1.38
CLDN18-203ENST00000479660 SYNJ1O43426 1573 aa23.58■■□□□ 1.37
CLDN18-203ENST00000479660 DNAJC5BQ9UF47 199 aa23.55■■□□□ 1.36
CLDN18-203ENST00000479660 PRDM2Q13029 1718 aa23.54■■□□□ 1.36
CLDN18-203ENST00000479660 TOP2BQ02880 1626 aa23.47■■□□□ 1.35
CLDN18-203ENST00000479660 SOGA1O94964 1423 aa23.46■■□□□ 1.35
CLDN18-203ENST00000479660 NESP48681 1621 aa23.43■■□□□ 1.34
CLDN18-203ENST00000479660 BIVM-ERCC5R4GMW8 1640 aa23.42■■□□□ 1.34
CLDN18-203ENST00000479660 CUX1P39880 1505 aa23.41■■□□□ 1.34
CLDN18-203ENST00000479660 EEA1Q15075 1411 aa23.39■■□□□ 1.33
CLDN18-203ENST00000479660 FANCD2Q9BXW9 1451 aa23.39■■□□□ 1.33
CLDN18-203ENST00000479660 LAMC3Q9Y6N6 1575 aa23.39■■□□□ 1.33
CLDN18-203ENST00000479660 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
CLDN18-203ENST00000479660 RUSC2Q8N2Y8 1516 aa23.37■■□□□ 1.33
CLDN18-203ENST00000479660 CSRNP3Q8WYN3 585 aa23.33■■□□□ 1.32
CLDN18-203ENST00000479660 PDS5BQ9NTI5 1447 aa23.25■■□□□ 1.31
CLDN18-203ENST00000479660 CEP164Q9UPV0 1460 aa23.22■■□□□ 1.31
CLDN18-203ENST00000479660 DNMBPQ6XZF7 1577 aa23.16■■□□□ 1.3
CLDN18-203ENST00000479660 FGD5Q6ZNL6 1462 aa23.15■■□□□ 1.3
CLDN18-203ENST00000479660 TOPBP1Q92547 1522 aa23.13■■□□□ 1.29
CLDN18-203ENST00000479660 KIF27Q86VH2 1401 aa23.11■■□□□ 1.29
CLDN18-203ENST00000479660 KIF21AQ7Z4S6 1674 aa23.1■■□□□ 1.29
CLDN18-203ENST00000479660 GOLGA3Q08378 1498 aa23.08■■□□□ 1.29
CLDN18-203ENST00000479660 URB2Q14146 1524 aaKnown RBP23.08■■□□□ 1.28
CLDN18-203ENST00000479660 UBTFP17480 764 aaKnown RBP23.07■■□□□ 1.28
CLDN18-203ENST00000479660 KIF21BO75037 1637 aa23.06■■□□□ 1.28
CLDN18-203ENST00000479660 TNIKQ9UKE5 1360 aa23.04■■□□□ 1.28
CLDN18-203ENST00000479660 CUX2O14529 1486 aa23.04■■□□□ 1.28
CLDN18-203ENST00000479660 POLA1P09884 1462 aaPredicted RBP23.03■■□□□ 1.28
CLDN18-203ENST00000479660 RAD54L2Q9Y4B4 1467 aa22.98■■□□□ 1.27
CLDN18-203ENST00000479660 RAPGEF2Q9Y4G8 1499 aa22.97■■□□□ 1.27
CLDN18-203ENST00000479660 PRXQ9BXM0 1461 aa22.96■■□□□ 1.27
CLDN18-203ENST00000479660 ABCA10Q8WWZ4 1543 aa22.94■■□□□ 1.26
CLDN18-203ENST00000479660 CEP162Q5TB80 1403 aa22.93■■□□□ 1.26
CLDN18-203ENST00000479660 MRC2Q9UBG0 1479 aa22.92■■□□□ 1.26
CLDN18-203ENST00000479660 IGF1RP08069 1367 aa22.92■■□□□ 1.26
CLDN18-203ENST00000479660 ERICH3Q5RHP9 1530 aa22.9■■□□□ 1.26
CLDN18-203ENST00000479660 ERCC6Q03468 1493 aa22.86■■□□□ 1.25
CLDN18-203ENST00000479660 CARMIL1Q5VZK9 1371 aa22.8■■□□□ 1.24
CLDN18-203ENST00000479660 WDR97A6NE52 1622 aa22.8■■□□□ 1.24
CLDN18-203ENST00000479660 WDR62O43379 1518 aa22.78■■□□□ 1.24
CLDN18-203ENST00000479660 TDRD9Q8NDG6 1382 aaKnown RBP22.78■■□□□ 1.24
CLDN18-203ENST00000479660 TARBP1Q13395 1621 aaKnown RBP22.75■■□□□ 1.23
CLDN18-203ENST00000479660 CLIP1P30622 1438 aa22.74■■□□□ 1.23
CLDN18-203ENST00000479660 GAPVD1Q14C86 1478 aa22.72■■□□□ 1.23
CLDN18-203ENST00000479660 ABCA5Q8WWZ7 1642 aa22.71■■□□□ 1.23
CLDN18-203ENST00000479660 RANGAP1P46060 587 aaPredicted RBP22.7■■□□□ 1.23
CLDN18-203ENST00000479660 THOC2Q8NI27 1593 aaKnown RBP22.68■■□□□ 1.22
CLDN18-203ENST00000479660 PCGF6Q9BYE7 350 aa22.66■■□□□ 1.22
CLDN18-203ENST00000479660 CUL7Q14999 1698 aa22.66■■□□□ 1.22
CLDN18-203ENST00000479660 IFT140Q96RY7 1462 aa22.66■■□□□ 1.22
CLDN18-203ENST00000479660 AQRO60306 1485 aaKnown RBP eCLIP22.61■■□□□ 1.21
CLDN18-203ENST00000479660 TRIM26Q12899 539 aaPredicted RBP22.6■■□□□ 1.21
CLDN18-203ENST00000479660 PPARGC1BQ86YN6 1023 aaKnown RBP22.56■■□□□ 1.2
CLDN18-203ENST00000479660 ZNF608Q9ULD9 1512 aaPredicted RBP22.56■■□□□ 1.2
CLDN18-203ENST00000479660 VPS8Q8N3P4 1428 aa22.53■■□□□ 1.2
CLDN18-203ENST00000479660 PBRM1Q86U86 1689 aa22.53■■□□□ 1.2
CLDN18-203ENST00000479660 GRIN2BQ13224 1484 aa22.52■■□□□ 1.19
CLDN18-203ENST00000479660 ARAP1Q96P48 1450 aa22.48■■□□□ 1.19
CLDN18-203ENST00000479660 ARHGAP35Q9NRY4 1499 aa22.47■■□□□ 1.19
CLDN18-203ENST00000479660 FHAD1B1AJZ9 1412 aa22.47■■□□□ 1.19
CLDN18-203ENST00000479660 EIF4G3O43432 1585 aaKnown RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms