RNA–Protein interactions for RNA: ENST00000479615.5

PRKN-207, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 5

Gene PRKN, Length 904 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-207ENST00000479615 NISCHQ9Y2I1 1504 aa37.05■■■■□ 3.52
PRKN-207ENST00000479615 CCDC180Q9P1Z9 1646 aa33.09■■■□□ 2.89
PRKN-207ENST00000479615 ABCC9O60706 1549 aa32.72■■■□□ 2.83
PRKN-207ENST00000479615 RB1CC1Q8TDY2 1594 aa31.39■■■□□ 2.61
PRKN-207ENST00000479615 NACADO15069 1562 aa31.29■■■□□ 2.6
PRKN-207ENST00000479615 DCAF8L2P0C7V8 631 aa31.15■■■□□ 2.58
PRKN-207ENST00000479615 MYO15BQ96JP2 1530 aa31.03■■■□□ 2.56
PRKN-207ENST00000479615 ZCCHC6Q5VYS8 1495 aaKnown RBP30.76■■■□□ 2.52
PRKN-207ENST00000479615 DCAF1Q9Y4B6 1507 aa30.71■■■□□ 2.51
PRKN-207ENST00000479615 PABPN1Q86U42 306 aaKnown RBP eCLIP30.55■■■□□ 2.48
PRKN-207ENST00000479615 UNC13AQ9UPW8 1703 aa30.45■■■□□ 2.47
PRKN-207ENST00000479615 DNAJC5BQ9UF47 199 aa30.4■■■□□ 2.46
PRKN-207ENST00000479615 BICRAQ9NZM4 1560 aa30.34■■■□□ 2.45
PRKN-207ENST00000479615 SHROOM4Q9ULL8 1493 aa30.21■■■□□ 2.43
PRKN-207ENST00000479615 SCRIBQ14160 1630 aa30.07■■■□□ 2.4
PRKN-207ENST00000479615 EIF4G1Q04637 1599 aaKnown RBP29.63■■■□□ 2.33
PRKN-207ENST00000479615 CC2D2AQ9P2K1 1620 aa29.58■■■□□ 2.33
PRKN-207ENST00000479615 CECR2Q9BXF3 1484 aa29.52■■■□□ 2.32
PRKN-207ENST00000479615 NCAPD3P42695 1498 aa28.9■■■□□ 2.22
PRKN-207ENST00000479615 ATAD2BQ9ULI0 1458 aa28.79■■■□□ 2.2
PRKN-207ENST00000479615 SMARCA4P51532 1647 aa28.78■■■□□ 2.2
PRKN-207ENST00000479615 SMARCA2P51531 1590 aa28.77■■■□□ 2.2
PRKN-207ENST00000479615 BAZ1AQ9NRL2 1556 aaPredicted RBP28.77■■■□□ 2.2
PRKN-207ENST00000479615 HMGXB3Q12766 1538 aa28.66■■■□□ 2.18
PRKN-207ENST00000479615 PEG3Q9GZU2 1588 aa28.58■■■□□ 2.17
PRKN-207ENST00000479615 BAZ1BQ9UIG0 1483 aaKnown RBP28.53■■■□□ 2.16
PRKN-207ENST00000479615 MROH2BQ7Z745 1585 aa28.49■■■□□ 2.15
PRKN-207ENST00000479615 ERCC6Q03468 1493 aa28.32■■■□□ 2.12
PRKN-207ENST00000479615 CUX2O14529 1486 aa28.21■■■□□ 2.11
PRKN-207ENST00000479615 NESP48681 1621 aa28.17■■■□□ 2.1
PRKN-207ENST00000479615 LAMC3Q9Y6N6 1575 aa28.15■■■□□ 2.1
PRKN-207ENST00000479615 WIZO95785 1651 aa28.1■■■□□ 2.09
PRKN-207ENST00000479615 RSF1Q96T23 1441 aaPredicted RBP28.09■■■□□ 2.09
PRKN-207ENST00000479615 PDS5BQ9NTI5 1447 aa28.05■■■□□ 2.08
PRKN-207ENST00000479615 CADPSQ9ULU8 1353 aa28.03■■■□□ 2.08
PRKN-207ENST00000479615 TOP2AP11388 1531 aaKnown RBP27.88■■■□□ 2.05
PRKN-207ENST00000479615 DNAJC5Q9H3Z4 198 aa27.83■■■□□ 2.05
PRKN-207ENST00000479615 THOC2Q8NI27 1593 aaKnown RBP27.82■■■□□ 2.04
PRKN-207ENST00000479615 KIF21AQ7Z4S6 1674 aa27.77■■■□□ 2.04
PRKN-207ENST00000479615 CFTRP13569 1480 aa27.76■■■□□ 2.03
PRKN-207ENST00000479615 MRC2Q9UBG0 1479 aa27.7■■■□□ 2.03
PRKN-207ENST00000479615 CEP164Q9UPV0 1460 aa27.66■■■□□ 2.02
PRKN-207ENST00000479615 FANCD2Q9BXW9 1451 aa27.65■■■□□ 2.02
PRKN-207ENST00000479615 WDR62O43379 1518 aa27.61■■■□□ 2.01
PRKN-207ENST00000479615 CCDC88BA6NC98 1476 aa27.56■■■□□ 2
PRKN-207ENST00000479615 PRDM2Q13029 1718 aa27.35■■□□□ 1.97
PRKN-207ENST00000479615 URB2Q14146 1524 aaKnown RBP27.34■■□□□ 1.97
PRKN-207ENST00000479615 ABCC8Q09428 1581 aa27.26■■□□□ 1.95
PRKN-207ENST00000479615 IFT140Q96RY7 1462 aa27.14■■□□□ 1.94
PRKN-207ENST00000479615 TOPBP1Q92547 1522 aa27.14■■□□□ 1.94
PRKN-207ENST00000479615 DNMBPQ6XZF7 1577 aa27.08■■□□□ 1.93
PRKN-207ENST00000479615 SUPT5HO00267 1087 aaKnown RBP27.05■■□□□ 1.92
PRKN-207ENST00000479615 OSCARQ8IYS5 282 aa27.03■■□□□ 1.92
PRKN-207ENST00000479615 ZNF608Q9ULD9 1512 aaPredicted RBP26.94■■□□□ 1.9
PRKN-207ENST00000479615 POLA1P09884 1462 aaPredicted RBP26.88■■□□□ 1.89
PRKN-207ENST00000479615 TARBP1Q13395 1621 aaKnown RBP26.83■■□□□ 1.89
PRKN-207ENST00000479615 SOGA1O94964 1423 aa26.82■■□□□ 1.88
PRKN-207ENST00000479615 EIF4G3O43432 1585 aaKnown RBP26.8■■□□□ 1.88
PRKN-207ENST00000479615 AQRO60306 1485 aaKnown RBP eCLIP26.77■■□□□ 1.88
PRKN-207ENST00000479615 CUX1P39880 1505 aa26.75■■□□□ 1.87
PRKN-207ENST00000479615 FGD5Q6ZNL6 1462 aa26.74■■□□□ 1.87
PRKN-207ENST00000479615 RAD54L2Q9Y4B4 1467 aa26.74■■□□□ 1.87
PRKN-207ENST00000479615 WDR97A6NE52 1622 aa26.72■■□□□ 1.87
PRKN-207ENST00000479615 TDRD9Q8NDG6 1382 aaKnown RBP26.69■■□□□ 1.86
PRKN-207ENST00000479615 TRIM41Q8WV44 630 aa26.65■■□□□ 1.86
PRKN-207ENST00000479615 FBLN2P98095 1184 aa26.59■■□□□ 1.85
PRKN-207ENST00000479615 GRIN2BQ13224 1484 aa26.56■■□□□ 1.84
PRKN-207ENST00000479615 MAGI1Q96QZ7 1491 aaPredicted RBP26.54■■□□□ 1.84
PRKN-207ENST00000479615 WRNQ14191 1432 aaPredicted RBP eCLIP26.53■■□□□ 1.84
PRKN-207ENST00000479615 ABCA10Q8WWZ4 1543 aa26.52■■□□□ 1.84
PRKN-207ENST00000479615 SNAPC4Q5SXM2 1469 aa26.51■■□□□ 1.83
PRKN-207ENST00000479615 CHMP7Q8WUX9 453 aaPredicted RBP26.51■■□□□ 1.83
PRKN-207ENST00000479615 GAPVD1Q14C86 1478 aa26.49■■□□□ 1.83
PRKN-207ENST00000479615 CHD1O14646 1710 aa26.48■■□□□ 1.83
PRKN-207ENST00000479615 ARHGEF11O15085 1522 aa26.45■■□□□ 1.83
PRKN-207ENST00000479615 RIMBP3CA6NJZ7 1639 aa26.44■■□□□ 1.82
PRKN-207ENST00000479615 RIMBP3BA6NNM3 1639 aa26.44■■□□□ 1.82
PRKN-207ENST00000479615 TOP2BQ02880 1626 aa26.44■■□□□ 1.82
PRKN-207ENST00000479615 RIMBP3Q9UFD9 1639 aa26.44■■□□□ 1.82
PRKN-207ENST00000479615 SYNJ2O15056 1496 aa26.43■■□□□ 1.82
PRKN-207ENST00000479615 BIVM-ERCC5R4GMW8 1640 aa26.41■■□□□ 1.82
PRKN-207ENST00000479615 ABCA5Q8WWZ7 1642 aa26.37■■□□□ 1.81
PRKN-207ENST00000479615 SYNJ1O43426 1573 aa26.36■■□□□ 1.81
PRKN-207ENST00000479615 PBRM1Q86U86 1689 aa26.31■■□□□ 1.8
PRKN-207ENST00000479615 CYB5RLQ6IPT4 315 aa26.29■■□□□ 1.8
PRKN-207ENST00000479615 CLASP1Q7Z460 1538 aa26.28■■□□□ 1.8
PRKN-207ENST00000479615 ERICH3Q5RHP9 1530 aa26.21■■□□□ 1.79
PRKN-207ENST00000479615 FHAD1B1AJZ9 1412 aa26.21■■□□□ 1.79
PRKN-207ENST00000479615 GRIN2AQ12879 1464 aa26.18■■□□□ 1.78
PRKN-207ENST00000479615 ARAP1Q96P48 1450 aa26.18■■□□□ 1.78
PRKN-207ENST00000479615 ADAMTS12P58397 1594 aa26.15■■□□□ 1.78
PRKN-207ENST00000479615 NUP160Q12769 1436 aa26.11■■□□□ 1.77
PRKN-207ENST00000479615 KIF27Q86VH2 1401 aa26.05■■□□□ 1.76
PRKN-207ENST00000479615 CEP170Q5SW79 1584 aa25.99■■□□□ 1.75
PRKN-207ENST00000479615 IGF1RP08069 1367 aa25.95■■□□□ 1.75
PRKN-207ENST00000479615 TRHP20396 242 aaPredicted RBP25.91■■□□□ 1.74
PRKN-207ENST00000479615 JPH4Q96JJ6 628 aa25.89■■□□□ 1.74
PRKN-207ENST00000479615 SHROOM2Q13796 1616 aa25.88■■□□□ 1.73
PRKN-207ENST00000479615 CUL7Q14999 1698 aa25.84■■□□□ 1.73
PRKN-207ENST00000479615 PRG4Q92954 1404 aaPredicted RBP25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms