RNA–Protein interactions for RNA: ENST00000479602.5

DDX56-211, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 440 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-211ENST00000479602 NISCHQ9Y2I1 1504 aa21.98■■□□□ 1.11
DDX56-211ENST00000479602 ABCC9O60706 1549 aa19.69■□□□□ 0.74
DDX56-211ENST00000479602 CCDC180Q9P1Z9 1646 aa19.61■□□□□ 0.73
DDX56-211ENST00000479602 DNAJC5BQ9UF47 199 aa18.72■□□□□ 0.59
DDX56-211ENST00000479602 RB1CC1Q8TDY2 1594 aa18.71■□□□□ 0.59
DDX56-211ENST00000479602 NACADO15069 1562 aa18.64■□□□□ 0.57
DDX56-211ENST00000479602 MYO15BQ96JP2 1530 aa18.48■□□□□ 0.55
DDX56-211ENST00000479602 DCAF8L2P0C7V8 631 aa18.47■□□□□ 0.55
DDX56-211ENST00000479602 PABPN1Q86U42 306 aaKnown RBP eCLIP18.41■□□□□ 0.542e-7■■■■■ 27.8
DDX56-211ENST00000479602 BICRAQ9NZM4 1560 aa18.26■□□□□ 0.51
DDX56-211ENST00000479602 UNC13AQ9UPW8 1703 aa18.2■□□□□ 0.5
DDX56-211ENST00000479602 DCAF1Q9Y4B6 1507 aa18.2■□□□□ 0.5
DDX56-211ENST00000479602 ZCCHC6Q5VYS8 1495 aaKnown RBP18.2■□□□□ 0.5
DDX56-211ENST00000479602 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
DDX56-211ENST00000479602 SCRIBQ14160 1630 aa17.82■□□□□ 0.44
DDX56-211ENST00000479602 CECR2Q9BXF3 1484 aa17.78■□□□□ 0.44
DDX56-211ENST00000479602 CC2D2AQ9P2K1 1620 aa17.78■□□□□ 0.44
DDX56-211ENST00000479602 EIF4G1Q04637 1599 aaKnown RBP17.76■□□□□ 0.43
DDX56-211ENST00000479602 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
DDX56-211ENST00000479602 ATAD2BQ9ULI0 1458 aa17.2■□□□□ 0.34
DDX56-211ENST00000479602 DNAJC5Q9H3Z4 198 aa17.19■□□□□ 0.34
DDX56-211ENST00000479602 SMARCA4P51532 1647 aa17.07■□□□□ 0.32
DDX56-211ENST00000479602 SMARCA2P51531 1590 aa17.06■□□□□ 0.32
DDX56-211ENST00000479602 HMGXB3Q12766 1538 aa17.06■□□□□ 0.32
DDX56-211ENST00000479602 CUX2O14529 1486 aa17.02■□□□□ 0.32
DDX56-211ENST00000479602 PEG3Q9GZU2 1588 aa17.01■□□□□ 0.31
DDX56-211ENST00000479602 BAZ1AQ9NRL2 1556 aaPredicted RBP17■□□□□ 0.31
DDX56-211ENST00000479602 NESP48681 1621 aa16.94■□□□□ 0.3
DDX56-211ENST00000479602 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
DDX56-211ENST00000479602 BAZ1BQ9UIG0 1483 aaKnown RBP16.93■□□□□ 0.3
DDX56-211ENST00000479602 MROH2BQ7Z745 1585 aa16.92■□□□□ 0.3
DDX56-211ENST00000479602 LAMC3Q9Y6N6 1575 aa16.78■□□□□ 0.28
DDX56-211ENST00000479602 CADPSQ9ULU8 1353 aa16.76■□□□□ 0.27
DDX56-211ENST00000479602 PDS5BQ9NTI5 1447 aa16.74■□□□□ 0.27
DDX56-211ENST00000479602 THOC2Q8NI27 1593 aaKnown RBP16.72■□□□□ 0.27
DDX56-211ENST00000479602 WIZO95785 1651 aa16.63■□□□□ 0.25
DDX56-211ENST00000479602 RSF1Q96T23 1441 aaPredicted RBP16.62■□□□□ 0.25
DDX56-211ENST00000479602 KIF21AQ7Z4S6 1674 aa16.59■□□□□ 0.25
DDX56-211ENST00000479602 MRC2Q9UBG0 1479 aa16.56■□□□□ 0.24
DDX56-211ENST00000479602 CFTRP13569 1480 aa16.55■□□□□ 0.24
DDX56-211ENST00000479602 WDR62O43379 1518 aa16.54■□□□□ 0.24
DDX56-211ENST00000479602 FANCD2Q9BXW9 1451 aa16.48■□□□□ 0.23
DDX56-211ENST00000479602 TOP2AP11388 1531 aaKnown RBP16.45■□□□□ 0.22
DDX56-211ENST00000479602 CEP164Q9UPV0 1460 aa16.45■□□□□ 0.22
DDX56-211ENST00000479602 URB2Q14146 1524 aaKnown RBP16.37■□□□□ 0.21
DDX56-211ENST00000479602 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
DDX56-211ENST00000479602 OSCARQ8IYS5 282 aa16.31■□□□□ 0.2
DDX56-211ENST00000479602 TRIM41Q8WV44 630 aa16.22■□□□□ 0.19
DDX56-211ENST00000479602 IFT140Q96RY7 1462 aa16.19■□□□□ 0.18
DDX56-211ENST00000479602 ZNF608Q9ULD9 1512 aaPredicted RBP16.18■□□□□ 0.18
DDX56-211ENST00000479602 TOPBP1Q92547 1522 aa16.17■□□□□ 0.18
DDX56-211ENST00000479602 ABCC8Q09428 1581 aa16.14■□□□□ 0.17
DDX56-211ENST00000479602 PRDM2Q13029 1718 aa16.12■□□□□ 0.17
DDX56-211ENST00000479602 DNMBPQ6XZF7 1577 aa16.06■□□□□ 0.16
DDX56-211ENST00000479602 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.164e-7■■■■□ 19.9
DDX56-211ENST00000479602 TARBP1Q13395 1621 aaKnown RBP16.03■□□□□ 0.16
DDX56-211ENST00000479602 POLA1P09884 1462 aaPredicted RBP16.02■□□□□ 0.15
DDX56-211ENST00000479602 EIF4G3O43432 1585 aaKnown RBP15.96■□□□□ 0.15
DDX56-211ENST00000479602 SOGA1O94964 1423 aa15.96■□□□□ 0.15
DDX56-211ENST00000479602 ARHGEF11O15085 1522 aa15.96■□□□□ 0.15
DDX56-211ENST00000479602 RIMBP3CA6NJZ7 1639 aa15.96■□□□□ 0.15
DDX56-211ENST00000479602 RIMBP3BA6NNM3 1639 aa15.96■□□□□ 0.15
DDX56-211ENST00000479602 RIMBP3Q9UFD9 1639 aa15.96■□□□□ 0.15
DDX56-211ENST00000479602 RAD54L2Q9Y4B4 1467 aa15.96■□□□□ 0.14
DDX56-211ENST00000479602 TDRD9Q8NDG6 1382 aaKnown RBP15.94■□□□□ 0.14
DDX56-211ENST00000479602 CYB5RLQ6IPT4 315 aa15.89■□□□□ 0.13
DDX56-211ENST00000479602 CUX1P39880 1505 aa15.88■□□□□ 0.13
DDX56-211ENST00000479602 FGD5Q6ZNL6 1462 aa15.87■□□□□ 0.13
DDX56-211ENST00000479602 FBLN2P98095 1184 aa15.85■□□□□ 0.13
DDX56-211ENST00000479602 WDR97A6NE52 1622 aa15.83■□□□□ 0.13
DDX56-211ENST00000479602 ARAP1Q96P48 1450 aa15.82■□□□□ 0.12
DDX56-211ENST00000479602 SNAPC4Q5SXM2 1469 aa15.8■□□□□ 0.12
DDX56-211ENST00000479602 CHMP7Q8WUX9 453 aaPredicted RBP15.8■□□□□ 0.12
DDX56-211ENST00000479602 CHD1O14646 1710 aa15.8■□□□□ 0.12
DDX56-211ENST00000479602 GRIN2BQ13224 1484 aa15.79■□□□□ 0.12
DDX56-211ENST00000479602 MAGI1Q96QZ7 1491 aaPredicted RBP15.79■□□□□ 0.12
DDX56-211ENST00000479602 SUPT5HO00267 1087 aaKnown RBP15.78■□□□□ 0.12
DDX56-211ENST00000479602 CLASP1Q7Z460 1538 aa15.77■□□□□ 0.11
DDX56-211ENST00000479602 ABCA10Q8WWZ4 1543 aa15.75■□□□□ 0.11
DDX56-211ENST00000479602 SYNJ2O15056 1496 aa15.75■□□□□ 0.11
DDX56-211ENST00000479602 GAPVD1Q14C86 1478 aa15.73■□□□□ 0.11
DDX56-211ENST00000479602 SYNJ1O43426 1573 aa15.67■□□□□ 0.1
DDX56-211ENST00000479602 WRNQ14191 1432 aaPredicted RBP eCLIP15.66■□□□□ 0.1
DDX56-211ENST00000479602 ABCA5Q8WWZ7 1642 aa15.65■□□□□ 0.1
DDX56-211ENST00000479602 TRHP20396 242 aaPredicted RBP15.62■□□□□ 0.09
DDX56-211ENST00000479602 NUP160Q12769 1436 aa15.6■□□□□ 0.09
DDX56-211ENST00000479602 TOP2BQ02880 1626 aa15.59■□□□□ 0.09
DDX56-211ENST00000479602 GRIN2AQ12879 1464 aa15.59■□□□□ 0.09
DDX56-211ENST00000479602 FHAD1B1AJZ9 1412 aa15.56■□□□□ 0.08
DDX56-211ENST00000479602 PBRM1Q86U86 1689 aa15.56■□□□□ 0.08
DDX56-211ENST00000479602 BIVM-ERCC5R4GMW8 1640 aa15.55■□□□□ 0.08
DDX56-211ENST00000479602 ERICH3Q5RHP9 1530 aa15.52■□□□□ 0.07
DDX56-211ENST00000479602 ERCC6L2Q5T890 1561 aa15.51■□□□□ 0.07
DDX56-211ENST00000479602 ADAMTS12P58397 1594 aa15.5■□□□□ 0.07
DDX56-211ENST00000479602 CEP170Q5SW79 1584 aa15.5■□□□□ 0.07
DDX56-211ENST00000479602 JPH4Q96JJ6 628 aa15.47■□□□□ 0.07
DDX56-211ENST00000479602 SHROOM2Q13796 1616 aa15.46■□□□□ 0.07
DDX56-211ENST00000479602 IGF1RP08069 1367 aa15.44■□□□□ 0.06
DDX56-211ENST00000479602 PRG4Q92954 1404 aaPredicted RBP15.41■□□□□ 0.06
DDX56-211ENST00000479602 KIAA0586Q9BVV6 1533 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms