RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 NISCHQ9Y2I1 1504 aa43.3■■■■■ 4.52
ECHDC1-216ENST00000479525 CCDC180Q9P1Z9 1646 aa38.75■■■■□ 3.79
ECHDC1-216ENST00000479525 ABCC9O60706 1549 aa38.66■■■■□ 3.78
ECHDC1-216ENST00000479525 RB1CC1Q8TDY2 1594 aa36.75■■■■□ 3.47
ECHDC1-216ENST00000479525 DCAF8L2P0C7V8 631 aa36.6■■■■□ 3.45
ECHDC1-216ENST00000479525 NACADO15069 1562 aa36.5■■■■□ 3.43
ECHDC1-216ENST00000479525 UNC13AQ9UPW8 1703 aa36.19■■■■□ 3.38
ECHDC1-216ENST00000479525 PABPN1Q86U42 306 aaKnown RBP eCLIP36.03■■■■□ 3.36
ECHDC1-216ENST00000479525 DNAJC5BQ9UF47 199 aa36.03■■■■□ 3.36
ECHDC1-216ENST00000479525 ZCCHC6Q5VYS8 1495 aaKnown RBP35.94■■■■□ 3.34
ECHDC1-216ENST00000479525 MYO15BQ96JP2 1530 aa35.93■■■■□ 3.34
ECHDC1-216ENST00000479525 BICRAQ9NZM4 1560 aa35.78■■■■□ 3.32
ECHDC1-216ENST00000479525 DCAF1Q9Y4B6 1507 aa35.63■■■■□ 3.29
ECHDC1-216ENST00000479525 SCRIBQ14160 1630 aa35.52■■■■□ 3.28
ECHDC1-216ENST00000479525 SHROOM4Q9ULL8 1493 aa35■■■■□ 3.19
ECHDC1-216ENST00000479525 CC2D2AQ9P2K1 1620 aa34.91■■■■□ 3.18
ECHDC1-216ENST00000479525 EIF4G1Q04637 1599 aaKnown RBP34.84■■■■□ 3.17
ECHDC1-216ENST00000479525 CECR2Q9BXF3 1484 aa34.7■■■■□ 3.15
ECHDC1-216ENST00000479525 SMARCA4P51532 1647 aa33.79■■■■□ 3
ECHDC1-216ENST00000479525 ATAD2BQ9ULI0 1458 aa33.69■■■□□ 2.98
ECHDC1-216ENST00000479525 NCAPD3P42695 1498 aa33.66■■■□□ 2.98
ECHDC1-216ENST00000479525 SMARCA2P51531 1590 aa33.57■■■□□ 2.96
ECHDC1-216ENST00000479525 BAZ1AQ9NRL2 1556 aaPredicted RBP33.56■■■□□ 2.96
ECHDC1-216ENST00000479525 HMGXB3Q12766 1538 aa33.49■■■□□ 2.95
ECHDC1-216ENST00000479525 MROH2BQ7Z745 1585 aa33.46■■■□□ 2.95
ECHDC1-216ENST00000479525 BAZ1BQ9UIG0 1483 aaKnown RBP33.41■■■□□ 2.94
ECHDC1-216ENST00000479525 PEG3Q9GZU2 1588 aa33.33■■■□□ 2.93
ECHDC1-216ENST00000479525 NESP48681 1621 aa33.31■■■□□ 2.92
ECHDC1-216ENST00000479525 ERCC6Q03468 1493 aa33.29■■■□□ 2.92
ECHDC1-216ENST00000479525 WIZO95785 1651 aa33.17■■■□□ 2.9
ECHDC1-216ENST00000479525 CUX2O14529 1486 aa33.01■■■□□ 2.87
ECHDC1-216ENST00000479525 KIF21AQ7Z4S6 1674 aa32.95■■■□□ 2.87
ECHDC1-216ENST00000479525 LAMC3Q9Y6N6 1575 aa32.94■■■□□ 2.86
ECHDC1-216ENST00000479525 THOC2Q8NI27 1593 aaKnown RBP32.87■■■□□ 2.85
ECHDC1-216ENST00000479525 RSF1Q96T23 1441 aaPredicted RBP32.77■■■□□ 2.84
ECHDC1-216ENST00000479525 DNAJC5Q9H3Z4 198 aa32.73■■■□□ 2.83
ECHDC1-216ENST00000479525 CADPSQ9ULU8 1353 aa32.69■■■□□ 2.82
ECHDC1-216ENST00000479525 PDS5BQ9NTI5 1447 aa32.68■■■□□ 2.82
ECHDC1-216ENST00000479525 TOP2AP11388 1531 aaKnown RBP32.61■■■□□ 2.81
ECHDC1-216ENST00000479525 MRC2Q9UBG0 1479 aa32.46■■■□□ 2.79
ECHDC1-216ENST00000479525 CEP164Q9UPV0 1460 aa32.41■■■□□ 2.78
ECHDC1-216ENST00000479525 FANCD2Q9BXW9 1451 aa32.4■■■□□ 2.78
ECHDC1-216ENST00000479525 WDR62O43379 1518 aa32.38■■■□□ 2.77
ECHDC1-216ENST00000479525 CFTRP13569 1480 aa32.37■■■□□ 2.77
ECHDC1-216ENST00000479525 CCDC88BA6NC98 1476 aa32.26■■■□□ 2.76
ECHDC1-216ENST00000479525 PRDM2Q13029 1718 aa32.26■■■□□ 2.75
ECHDC1-216ENST00000479525 URB2Q14146 1524 aaKnown RBP32.17■■■□□ 2.74
ECHDC1-216ENST00000479525 TOPBP1Q92547 1522 aa31.83■■■□□ 2.69
ECHDC1-216ENST00000479525 ZNF608Q9ULD9 1512 aaPredicted RBP31.77■■■□□ 2.68
ECHDC1-216ENST00000479525 DNMBPQ6XZF7 1577 aa31.72■■■□□ 2.67
ECHDC1-216ENST00000479525 IFT140Q96RY7 1462 aa31.68■■■□□ 2.66
ECHDC1-216ENST00000479525 SUPT5HO00267 1087 aaKnown RBP31.67■■■□□ 2.66
ECHDC1-216ENST00000479525 TRIM41Q8WV44 630 aa31.63■■■□□ 2.65
ECHDC1-216ENST00000479525 EIF4G3O43432 1585 aaKnown RBP31.62■■■□□ 2.65
ECHDC1-216ENST00000479525 ABCC8Q09428 1581 aa31.59■■■□□ 2.65
ECHDC1-216ENST00000479525 TARBP1Q13395 1621 aaKnown RBP31.55■■■□□ 2.64
ECHDC1-216ENST00000479525 OSCARQ8IYS5 282 aa31.55■■■□□ 2.64
ECHDC1-216ENST00000479525 POLA1P09884 1462 aaPredicted RBP31.52■■■□□ 2.64
ECHDC1-216ENST00000479525 AQRO60306 1485 aaKnown RBP eCLIP31.48■■■□□ 2.63
ECHDC1-216ENST00000479525 RAD54L2Q9Y4B4 1467 aa31.48■■■□□ 2.63
ECHDC1-216ENST00000479525 CHD1O14646 1710 aa31.42■■■□□ 2.62
ECHDC1-216ENST00000479525 CUX1P39880 1505 aa31.42■■■□□ 2.62
ECHDC1-216ENST00000479525 FGD5Q6ZNL6 1462 aa31.39■■■□□ 2.62
ECHDC1-216ENST00000479525 SOGA1O94964 1423 aa31.34■■■□□ 2.61
ECHDC1-216ENST00000479525 TDRD9Q8NDG6 1382 aaKnown RBP31.32■■■□□ 2.6
ECHDC1-216ENST00000479525 RIMBP3CA6NJZ7 1639 aa31.31■■■□□ 2.6
ECHDC1-216ENST00000479525 RIMBP3BA6NNM3 1639 aa31.31■■■□□ 2.6
ECHDC1-216ENST00000479525 RIMBP3Q9UFD9 1639 aa31.31■■■□□ 2.6
ECHDC1-216ENST00000479525 FBLN2P98095 1184 aa31.26■■■□□ 2.59
ECHDC1-216ENST00000479525 WDR97A6NE52 1622 aa31.22■■■□□ 2.59
ECHDC1-216ENST00000479525 SNAPC4Q5SXM2 1469 aa31.17■■■□□ 2.58
ECHDC1-216ENST00000479525 ARHGEF11O15085 1522 aa31.17■■■□□ 2.58
ECHDC1-216ENST00000479525 PBRM1Q86U86 1689 aa31.11■■■□□ 2.57
ECHDC1-216ENST00000479525 GRIN2BQ13224 1484 aa31.02■■■□□ 2.56
ECHDC1-216ENST00000479525 SYNJ1O43426 1573 aa31.01■■■□□ 2.55
ECHDC1-216ENST00000479525 GAPVD1Q14C86 1478 aa30.98■■■□□ 2.55
ECHDC1-216ENST00000479525 ABCA5Q8WWZ7 1642 aa30.98■■■□□ 2.55
ECHDC1-216ENST00000479525 BIVM-ERCC5R4GMW8 1640 aa30.97■■■□□ 2.55
ECHDC1-216ENST00000479525 MAGI1Q96QZ7 1491 aaPredicted RBP30.96■■■□□ 2.55
ECHDC1-216ENST00000479525 ABCA10Q8WWZ4 1543 aa30.96■■■□□ 2.55
ECHDC1-216ENST00000479525 CHMP7Q8WUX9 453 aaPredicted RBP30.95■■■□□ 2.55
ECHDC1-216ENST00000479525 CYB5RLQ6IPT4 315 aa30.93■■■□□ 2.54
ECHDC1-216ENST00000479525 TOP2BQ02880 1626 aa30.93■■■□□ 2.54
ECHDC1-216ENST00000479525 WRNQ14191 1432 aaPredicted RBP eCLIP30.91■■■□□ 2.54
ECHDC1-216ENST00000479525 CLASP1Q7Z460 1538 aa30.9■■■□□ 2.54
ECHDC1-216ENST00000479525 ARAP1Q96P48 1450 aa30.9■■■□□ 2.54
ECHDC1-216ENST00000479525 SYNJ2O15056 1496 aa30.88■■■□□ 2.53
ECHDC1-216ENST00000479525 ADAMTS12P58397 1594 aa30.74■■■□□ 2.51
ECHDC1-216ENST00000479525 GRIN2AQ12879 1464 aa30.66■■■□□ 2.5
ECHDC1-216ENST00000479525 CEP170Q5SW79 1584 aa30.63■■■□□ 2.49
ECHDC1-216ENST00000479525 ERCC6L2Q5T890 1561 aa30.6■■■□□ 2.49
ECHDC1-216ENST00000479525 ERICH3Q5RHP9 1530 aa30.55■■■□□ 2.48
ECHDC1-216ENST00000479525 FHAD1B1AJZ9 1412 aa30.54■■■□□ 2.48
ECHDC1-216ENST00000479525 TRHP20396 242 aaPredicted RBP30.54■■■□□ 2.48
ECHDC1-216ENST00000479525 NUP160Q12769 1436 aa30.5■■■□□ 2.47
ECHDC1-216ENST00000479525 SHROOM2Q13796 1616 aa30.4■■■□□ 2.46
ECHDC1-216ENST00000479525 RUSC2Q8N2Y8 1516 aa30.3■■■□□ 2.44
ECHDC1-216ENST00000479525 KIF27Q86VH2 1401 aa30.25■■■□□ 2.43
ECHDC1-216ENST00000479525 PRG4Q92954 1404 aaPredicted RBP30.24■■■□□ 2.43
ECHDC1-216ENST00000479525 IGF1RP08069 1367 aa30.23■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms