RNA–Protein interactions for RNA: ENST00000479295.1

PTPN18-210, Transcript of protein tyrosine phosphatase, non-receptor type 18, humanhuman

TSL 3

Gene PTPN18, Length 513 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN18-210ENST00000479295 NISCHQ9Y2I1 1504 aa23.9■■□□□ 1.42
PTPN18-210ENST00000479295 CCDC180Q9P1Z9 1646 aa21.27■■□□□ 1
PTPN18-210ENST00000479295 ABCC9O60706 1549 aa20.73■□□□□ 0.91
PTPN18-210ENST00000479295 NACADO15069 1562 aa20.01■□□□□ 0.79
PTPN18-210ENST00000479295 RB1CC1Q8TDY2 1594 aa20■□□□□ 0.79
PTPN18-210ENST00000479295 MYO15BQ96JP2 1530 aa19.98■□□□□ 0.79
PTPN18-210ENST00000479295 ZCCHC6Q5VYS8 1495 aaKnown RBP19.92■□□□□ 0.78
PTPN18-210ENST00000479295 DCAF1Q9Y4B6 1507 aa19.86■□□□□ 0.77
PTPN18-210ENST00000479295 DCAF8L2P0C7V8 631 aa19.76■□□□□ 0.75
PTPN18-210ENST00000479295 UNC13AQ9UPW8 1703 aa19.53■□□□□ 0.72
PTPN18-210ENST00000479295 BICRAQ9NZM4 1560 aa19.44■□□□□ 0.7
PTPN18-210ENST00000479295 PABPN1Q86U42 306 aaKnown RBP eCLIP19.35■□□□□ 0.69
PTPN18-210ENST00000479295 SCRIBQ14160 1630 aa19.29■□□□□ 0.68
PTPN18-210ENST00000479295 SHROOM4Q9ULL8 1493 aa19.29■□□□□ 0.68
PTPN18-210ENST00000479295 DNAJC5BQ9UF47 199 aa19.12■□□□□ 0.65
PTPN18-210ENST00000479295 EIF4G1Q04637 1599 aaKnown RBP18.89■□□□□ 0.62
PTPN18-210ENST00000479295 CC2D2AQ9P2K1 1620 aa18.8■□□□□ 0.6
PTPN18-210ENST00000479295 CECR2Q9BXF3 1484 aa18.66■□□□□ 0.58
PTPN18-210ENST00000479295 SMARCA4P51532 1647 aa18.53■□□□□ 0.56
PTPN18-210ENST00000479295 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
PTPN18-210ENST00000479295 NCAPD3P42695 1498 aa18.5■□□□□ 0.55
PTPN18-210ENST00000479295 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.55
PTPN18-210ENST00000479295 PEG3Q9GZU2 1588 aa18.44■□□□□ 0.54
PTPN18-210ENST00000479295 SMARCA2P51531 1590 aa18.42■□□□□ 0.54
PTPN18-210ENST00000479295 MROH2BQ7Z745 1585 aa18.39■□□□□ 0.53
PTPN18-210ENST00000479295 HMGXB3Q12766 1538 aa18.38■□□□□ 0.53
PTPN18-210ENST00000479295 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
PTPN18-210ENST00000479295 RSF1Q96T23 1441 aaPredicted RBP18.2■□□□□ 0.5
PTPN18-210ENST00000479295 WIZO95785 1651 aa18.16■□□□□ 0.5
PTPN18-210ENST00000479295 TOP2AP11388 1531 aaKnown RBP18.01■□□□□ 0.47
PTPN18-210ENST00000479295 LAMC3Q9Y6N6 1575 aa17.96■□□□□ 0.47
PTPN18-210ENST00000479295 NESP48681 1621 aa17.96■□□□□ 0.47
PTPN18-210ENST00000479295 CADPSQ9ULU8 1353 aa17.91■□□□□ 0.46
PTPN18-210ENST00000479295 ERCC6Q03468 1493 aa17.83■□□□□ 0.45
PTPN18-210ENST00000479295 CFTRP13569 1480 aa17.82■□□□□ 0.44
PTPN18-210ENST00000479295 PDS5BQ9NTI5 1447 aa17.81■□□□□ 0.44
PTPN18-210ENST00000479295 CCDC88BA6NC98 1476 aa17.79■□□□□ 0.44
PTPN18-210ENST00000479295 CUX2O14529 1486 aa17.77■□□□□ 0.44
PTPN18-210ENST00000479295 THOC2Q8NI27 1593 aaKnown RBP17.74■□□□□ 0.43
PTPN18-210ENST00000479295 KIF21AQ7Z4S6 1674 aa17.74■□□□□ 0.43
PTPN18-210ENST00000479295 FANCD2Q9BXW9 1451 aa17.66■□□□□ 0.42
PTPN18-210ENST00000479295 MRC2Q9UBG0 1479 aa17.64■□□□□ 0.41
PTPN18-210ENST00000479295 CEP164Q9UPV0 1460 aa17.63■□□□□ 0.41
PTPN18-210ENST00000479295 PRDM2Q13029 1718 aa17.63■□□□□ 0.41
PTPN18-210ENST00000479295 WDR62O43379 1518 aa17.62■□□□□ 0.41
PTPN18-210ENST00000479295 SUPT5HO00267 1087 aaKnown RBP17.54■□□□□ 0.4
PTPN18-210ENST00000479295 URB2Q14146 1524 aaKnown RBP17.52■□□□□ 0.39
PTPN18-210ENST00000479295 ABCC8Q09428 1581 aa17.43■□□□□ 0.38
PTPN18-210ENST00000479295 TOPBP1Q92547 1522 aa17.4■□□□□ 0.38
PTPN18-210ENST00000479295 DNMBPQ6XZF7 1577 aa17.38■□□□□ 0.37
PTPN18-210ENST00000479295 IFT140Q96RY7 1462 aa17.31■□□□□ 0.36
PTPN18-210ENST00000479295 CUX1P39880 1505 aa17.26■□□□□ 0.35
PTPN18-210ENST00000479295 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
PTPN18-210ENST00000479295 DNAJC5Q9H3Z4 198 aa17.25■□□□□ 0.35
PTPN18-210ENST00000479295 TARBP1Q13395 1621 aaKnown RBP17.24■□□□□ 0.35
PTPN18-210ENST00000479295 ZNF608Q9ULD9 1512 aaPredicted RBP17.2■□□□□ 0.34
PTPN18-210ENST00000479295 FGD5Q6ZNL6 1462 aa17.18■□□□□ 0.34
PTPN18-210ENST00000479295 SOGA1O94964 1423 aa17.15■□□□□ 0.34
PTPN18-210ENST00000479295 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
PTPN18-210ENST00000479295 WDR97A6NE52 1622 aa17.14■□□□□ 0.33
PTPN18-210ENST00000479295 EIF4G3O43432 1585 aaKnown RBP17.12■□□□□ 0.33
PTPN18-210ENST00000479295 BIVM-ERCC5R4GMW8 1640 aa17.12■□□□□ 0.33
PTPN18-210ENST00000479295 WRNQ14191 1432 aaPredicted RBP eCLIP17.12■□□□□ 0.33
PTPN18-210ENST00000479295 TOP2BQ02880 1626 aa17.11■□□□□ 0.33
PTPN18-210ENST00000479295 SYNJ1O43426 1573 aa17.08■□□□□ 0.32
PTPN18-210ENST00000479295 AQRO60306 1485 aaKnown RBP eCLIP17.08■□□□□ 0.32
PTPN18-210ENST00000479295 ABCA10Q8WWZ4 1543 aa17.06■□□□□ 0.32
PTPN18-210ENST00000479295 TDRD9Q8NDG6 1382 aaKnown RBP17.03■□□□□ 0.32
PTPN18-210ENST00000479295 ABCA5Q8WWZ7 1642 aa16.99■□□□□ 0.31
PTPN18-210ENST00000479295 OSCARQ8IYS5 282 aa16.98■□□□□ 0.31
PTPN18-210ENST00000479295 GRIN2BQ13224 1484 aa16.97■□□□□ 0.31
PTPN18-210ENST00000479295 GAPVD1Q14C86 1478 aa16.96■□□□□ 0.31
PTPN18-210ENST00000479295 MAGI1Q96QZ7 1491 aaPredicted RBP16.95■□□□□ 0.3
PTPN18-210ENST00000479295 SNAPC4Q5SXM2 1469 aa16.93■□□□□ 0.3
PTPN18-210ENST00000479295 PBRM1Q86U86 1689 aa16.9■□□□□ 0.3
PTPN18-210ENST00000479295 CHD1O14646 1710 aa16.88■□□□□ 0.29
PTPN18-210ENST00000479295 SYNJ2O15056 1496 aa16.87■□□□□ 0.29
PTPN18-210ENST00000479295 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
PTPN18-210ENST00000479295 ADAMTS12P58397 1594 aa16.81■□□□□ 0.28
PTPN18-210ENST00000479295 CHMP7Q8WUX9 453 aaPredicted RBP16.79■□□□□ 0.28
PTPN18-210ENST00000479295 CLASP1Q7Z460 1538 aa16.79■□□□□ 0.28
PTPN18-210ENST00000479295 FHAD1B1AJZ9 1412 aa16.79■□□□□ 0.28
PTPN18-210ENST00000479295 KIF27Q86VH2 1401 aa16.77■□□□□ 0.27
PTPN18-210ENST00000479295 GRIN2AQ12879 1464 aa16.76■□□□□ 0.27
PTPN18-210ENST00000479295 FBLN2P98095 1184 aa16.76■□□□□ 0.27
PTPN18-210ENST00000479295 IGF1RP08069 1367 aa16.74■□□□□ 0.27
PTPN18-210ENST00000479295 NUP160Q12769 1436 aa16.73■□□□□ 0.27
PTPN18-210ENST00000479295 ARHGEF11O15085 1522 aa16.72■□□□□ 0.27
PTPN18-210ENST00000479295 RIMBP3CA6NJZ7 1639 aa16.71■□□□□ 0.27
PTPN18-210ENST00000479295 RIMBP3BA6NNM3 1639 aa16.71■□□□□ 0.27
PTPN18-210ENST00000479295 RIMBP3Q9UFD9 1639 aa16.71■□□□□ 0.27
PTPN18-210ENST00000479295 CEP170Q5SW79 1584 aa16.67■□□□□ 0.26
PTPN18-210ENST00000479295 CUL7Q14999 1698 aa16.66■□□□□ 0.26
PTPN18-210ENST00000479295 TRIM41Q8WV44 630 aa16.63■□□□□ 0.25
PTPN18-210ENST00000479295 SHROOM2Q13796 1616 aa16.61■□□□□ 0.25
PTPN18-210ENST00000479295 CARMIL1Q5VZK9 1371 aa16.6■□□□□ 0.25
PTPN18-210ENST00000479295 RUSC2Q8N2Y8 1516 aa16.6■□□□□ 0.25
PTPN18-210ENST00000479295 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
PTPN18-210ENST00000479295 KIAA0586Q9BVV6 1533 aa16.54■□□□□ 0.24
PTPN18-210ENST00000479295 ERCC6L2Q5T890 1561 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms