RNA–Protein interactions for RNA: ENST00000479199.1

GCA-208, Transcript of grancalcin, humanhuman

TSL 2

Gene GCA, Length 597 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCA-208ENST00000479199 NISCHQ9Y2I1 1504 aa30.48■■■□□ 2.47
GCA-208ENST00000479199 ABCC9O60706 1549 aa27.53■■■□□ 2
GCA-208ENST00000479199 CCDC180Q9P1Z9 1646 aa27.51■■□□□ 1.99
GCA-208ENST00000479199 RB1CC1Q8TDY2 1594 aa26.16■■□□□ 1.78
GCA-208ENST00000479199 NACADO15069 1562 aa25.94■■□□□ 1.74
GCA-208ENST00000479199 DNAJC5BQ9UF47 199 aa25.85■■□□□ 1.73
GCA-208ENST00000479199 UNC13AQ9UPW8 1703 aa25.75■■□□□ 1.71
GCA-208ENST00000479199 DCAF8L2P0C7V8 631 aa25.66■■□□□ 1.7
GCA-208ENST00000479199 PABPN1Q86U42 306 aaKnown RBP eCLIP25.53■■□□□ 1.68
GCA-208ENST00000479199 MYO15BQ96JP2 1530 aa25.51■■□□□ 1.67
GCA-208ENST00000479199 BICRAQ9NZM4 1560 aa25.45■■□□□ 1.66
GCA-208ENST00000479199 ZCCHC6Q5VYS8 1495 aaKnown RBP25.28■■□□□ 1.64
GCA-208ENST00000479199 DCAF1Q9Y4B6 1507 aa25.16■■□□□ 1.62
GCA-208ENST00000479199 SCRIBQ14160 1630 aa25.05■■□□□ 1.6
GCA-208ENST00000479199 SHROOM4Q9ULL8 1493 aa25.02■■□□□ 1.6
GCA-208ENST00000479199 CC2D2AQ9P2K1 1620 aa24.91■■□□□ 1.58
GCA-208ENST00000479199 EIF4G1Q04637 1599 aaKnown RBP24.81■■□□□ 1.56
GCA-208ENST00000479199 CECR2Q9BXF3 1484 aa24.79■■□□□ 1.56
GCA-208ENST00000479199 NCAPD3P42695 1498 aa23.89■■□□□ 1.42
GCA-208ENST00000479199 SMARCA4P51532 1647 aa23.87■■□□□ 1.41
GCA-208ENST00000479199 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
GCA-208ENST00000479199 SMARCA2P51531 1590 aa23.79■■□□□ 1.4
GCA-208ENST00000479199 HMGXB3Q12766 1538 aa23.79■■□□□ 1.4
GCA-208ENST00000479199 DNAJC5Q9H3Z4 198 aa23.77■■□□□ 1.4
GCA-208ENST00000479199 ERCC6Q03468 1493 aa23.75■■□□□ 1.39
GCA-208ENST00000479199 CUX2O14529 1486 aa23.75■■□□□ 1.39
GCA-208ENST00000479199 BAZ1AQ9NRL2 1556 aaPredicted RBP23.68■■□□□ 1.38
GCA-208ENST00000479199 NESP48681 1621 aa23.64■■□□□ 1.38
GCA-208ENST00000479199 BAZ1BQ9UIG0 1483 aaKnown RBP23.62■■□□□ 1.37
GCA-208ENST00000479199 PEG3Q9GZU2 1588 aa23.61■■□□□ 1.37
GCA-208ENST00000479199 MROH2BQ7Z745 1585 aa23.51■■□□□ 1.35
GCA-208ENST00000479199 THOC2Q8NI27 1593 aaKnown RBP23.49■■□□□ 1.35
GCA-208ENST00000479199 LAMC3Q9Y6N6 1575 aa23.44■■□□□ 1.34
GCA-208ENST00000479199 KIF21AQ7Z4S6 1674 aa23.44■■□□□ 1.34
GCA-208ENST00000479199 WIZO95785 1651 aa23.28■■□□□ 1.32
GCA-208ENST00000479199 PDS5BQ9NTI5 1447 aa23.23■■□□□ 1.31
GCA-208ENST00000479199 CADPSQ9ULU8 1353 aa23.14■■□□□ 1.3
GCA-208ENST00000479199 MRC2Q9UBG0 1479 aa23.11■■□□□ 1.29
GCA-208ENST00000479199 WDR62O43379 1518 aa23.08■■□□□ 1.29
GCA-208ENST00000479199 CEP164Q9UPV0 1460 aa22.99■■□□□ 1.27
GCA-208ENST00000479199 TOP2AP11388 1531 aaKnown RBP22.94■■□□□ 1.26
GCA-208ENST00000479199 FANCD2Q9BXW9 1451 aa22.94■■□□□ 1.26
GCA-208ENST00000479199 RSF1Q96T23 1441 aaPredicted RBP22.93■■□□□ 1.26
GCA-208ENST00000479199 CFTRP13569 1480 aa22.9■■□□□ 1.26
GCA-208ENST00000479199 PRDM2Q13029 1718 aa22.88■■□□□ 1.25
GCA-208ENST00000479199 URB2Q14146 1524 aaKnown RBP22.8■■□□□ 1.24
GCA-208ENST00000479199 TRIM41Q8WV44 630 aa22.72■■□□□ 1.23
GCA-208ENST00000479199 CCDC88BA6NC98 1476 aa22.62■■□□□ 1.21
GCA-208ENST00000479199 OSCARQ8IYS5 282 aa22.53■■□□□ 1.2
GCA-208ENST00000479199 ZNF608Q9ULD9 1512 aaPredicted RBP22.52■■□□□ 1.2
GCA-208ENST00000479199 TOPBP1Q92547 1522 aa22.52■■□□□ 1.19
GCA-208ENST00000479199 IFT140Q96RY7 1462 aa22.51■■□□□ 1.19
GCA-208ENST00000479199 EIF4G3O43432 1585 aaKnown RBP22.47■■□□□ 1.19
GCA-208ENST00000479199 DNMBPQ6XZF7 1577 aa22.45■■□□□ 1.18
GCA-208ENST00000479199 RIMBP3CA6NJZ7 1639 aa22.45■■□□□ 1.18
GCA-208ENST00000479199 RIMBP3BA6NNM3 1639 aa22.45■■□□□ 1.18
GCA-208ENST00000479199 RIMBP3Q9UFD9 1639 aa22.45■■□□□ 1.18
GCA-208ENST00000479199 ABCC8Q09428 1581 aa22.39■■□□□ 1.18
GCA-208ENST00000479199 CHD1O14646 1710 aa22.37■■□□□ 1.17
GCA-208ENST00000479199 TARBP1Q13395 1621 aaKnown RBP22.37■■□□□ 1.17
GCA-208ENST00000479199 ARHGEF11O15085 1522 aa22.31■■□□□ 1.16
GCA-208ENST00000479199 POLA1P09884 1462 aaPredicted RBP22.28■■□□□ 1.16
GCA-208ENST00000479199 AQRO60306 1485 aaKnown RBP eCLIP22.26■■□□□ 1.15
GCA-208ENST00000479199 RAD54L2Q9Y4B4 1467 aa22.19■■□□□ 1.14
GCA-208ENST00000479199 FGD5Q6ZNL6 1462 aa22.14■■□□□ 1.13
GCA-208ENST00000479199 CUX1P39880 1505 aa22.11■■□□□ 1.13
GCA-208ENST00000479199 WDR97A6NE52 1622 aa22.1■■□□□ 1.13
GCA-208ENST00000479199 SOGA1O94964 1423 aa22.1■■□□□ 1.13
GCA-208ENST00000479199 ARAP1Q96P48 1450 aa22.09■■□□□ 1.13
GCA-208ENST00000479199 TDRD9Q8NDG6 1382 aaKnown RBP22.09■■□□□ 1.13
GCA-208ENST00000479199 SNAPC4Q5SXM2 1469 aa22.09■■□□□ 1.13
GCA-208ENST00000479199 FBLN2P98095 1184 aa22.08■■□□□ 1.13
GCA-208ENST00000479199 CYB5RLQ6IPT4 315 aa22.04■■□□□ 1.12
GCA-208ENST00000479199 CLASP1Q7Z460 1538 aa22.03■■□□□ 1.12
GCA-208ENST00000479199 PBRM1Q86U86 1689 aa22.03■■□□□ 1.12
GCA-208ENST00000479199 MAGI1Q96QZ7 1491 aaPredicted RBP21.99■■□□□ 1.11
GCA-208ENST00000479199 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
GCA-208ENST00000479199 GRIN2BQ13224 1484 aa21.96■■□□□ 1.11
GCA-208ENST00000479199 ABCA5Q8WWZ7 1642 aa21.91■■□□□ 1.1
GCA-208ENST00000479199 SYNJ2O15056 1496 aa21.91■■□□□ 1.1
GCA-208ENST00000479199 CHMP7Q8WUX9 453 aaPredicted RBP21.88■■□□□ 1.09
GCA-208ENST00000479199 GAPVD1Q14C86 1478 aa21.87■■□□□ 1.09
GCA-208ENST00000479199 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
GCA-208ENST00000479199 TRHP20396 242 aaPredicted RBP21.83■■□□□ 1.09
GCA-208ENST00000479199 BIVM-ERCC5R4GMW8 1640 aa21.78■■□□□ 1.08
GCA-208ENST00000479199 SUPT5HO00267 1087 aaKnown RBP21.78■■□□□ 1.08
GCA-208ENST00000479199 ADAMTS12P58397 1594 aa21.76■■□□□ 1.07
GCA-208ENST00000479199 TOP2BQ02880 1626 aa21.73■■□□□ 1.07
GCA-208ENST00000479199 GRIN2AQ12879 1464 aa21.71■■□□□ 1.07
GCA-208ENST00000479199 CEP170Q5SW79 1584 aa21.7■■□□□ 1.06
GCA-208ENST00000479199 ERCC6L2Q5T890 1561 aa21.7■■□□□ 1.06
GCA-208ENST00000479199 WRNQ14191 1432 aaPredicted RBP eCLIP21.69■■□□□ 1.06
GCA-208ENST00000479199 NUP160Q12769 1436 aa21.63■■□□□ 1.05
GCA-208ENST00000479199 SHROOM2Q13796 1616 aa21.62■■□□□ 1.05
GCA-208ENST00000479199 ERICH3Q5RHP9 1530 aa21.58■■□□□ 1.04
GCA-208ENST00000479199 FHAD1B1AJZ9 1412 aa21.57■■□□□ 1.04
GCA-208ENST00000479199 RUSC2Q8N2Y8 1516 aa21.46■■□□□ 1.03
GCA-208ENST00000479199 KIF13AQ9H1H9 1805 aa21.45■■□□□ 1.03
GCA-208ENST00000479199 PRG4Q92954 1404 aaPredicted RBP21.39■■□□□ 1.02
GCA-208ENST00000479199 CUL7Q14999 1698 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms