RNA–Protein interactions for RNA: ENST00000478702.5

GARNL3-215, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 4

Gene GARNL3, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-215ENST00000478702 NISCHQ9Y2I1 1504 aa39.55■■■■□ 3.92
GARNL3-215ENST00000478702 ABCC9O60706 1549 aa35.81■■■■□ 3.32
GARNL3-215ENST00000478702 CCDC180Q9P1Z9 1646 aa35.68■■■■□ 3.3
GARNL3-215ENST00000478702 RB1CC1Q8TDY2 1594 aa34■■■■□ 3.03
GARNL3-215ENST00000478702 DNAJC5BQ9UF47 199 aa33.82■■■■□ 3
GARNL3-215ENST00000478702 NACADO15069 1562 aa33.71■■■□□ 2.99
GARNL3-215ENST00000478702 UNC13AQ9UPW8 1703 aa33.45■■■□□ 2.95
GARNL3-215ENST00000478702 DCAF8L2P0C7V8 631 aa33.34■■■□□ 2.93
GARNL3-215ENST00000478702 PABPN1Q86U42 306 aaKnown RBP eCLIP33.25■■■□□ 2.91
GARNL3-215ENST00000478702 MYO15BQ96JP2 1530 aa33.16■■■□□ 2.9
GARNL3-215ENST00000478702 BICRAQ9NZM4 1560 aa33.1■■■□□ 2.89
GARNL3-215ENST00000478702 ZCCHC6Q5VYS8 1495 aaKnown RBP32.74■■■□□ 2.83
GARNL3-215ENST00000478702 DCAF1Q9Y4B6 1507 aa32.66■■■□□ 2.82
GARNL3-215ENST00000478702 SHROOM4Q9ULL8 1493 aa32.51■■■□□ 2.79
GARNL3-215ENST00000478702 SCRIBQ14160 1630 aa32.45■■■□□ 2.79
GARNL3-215ENST00000478702 CC2D2AQ9P2K1 1620 aa32.4■■■□□ 2.78
GARNL3-215ENST00000478702 CECR2Q9BXF3 1484 aa32.26■■■□□ 2.75
GARNL3-215ENST00000478702 EIF4G1Q04637 1599 aaKnown RBP32.25■■■□□ 2.75
GARNL3-215ENST00000478702 DNAJC5Q9H3Z4 198 aa31.16■■■□□ 2.58
GARNL3-215ENST00000478702 NCAPD3P42695 1498 aa31.09■■■□□ 2.57
GARNL3-215ENST00000478702 ATAD2BQ9ULI0 1458 aa30.98■■■□□ 2.55
GARNL3-215ENST00000478702 SMARCA4P51532 1647 aa30.95■■■□□ 2.55
GARNL3-215ENST00000478702 CUX2O14529 1486 aa30.94■■■□□ 2.54
GARNL3-215ENST00000478702 ERCC6Q03468 1493 aa30.88■■■□□ 2.53
GARNL3-215ENST00000478702 HMGXB3Q12766 1538 aa30.88■■■□□ 2.53
GARNL3-215ENST00000478702 SMARCA2P51531 1590 aa30.88■■■□□ 2.53
GARNL3-215ENST00000478702 NESP48681 1621 aa30.73■■■□□ 2.51
GARNL3-215ENST00000478702 BAZ1AQ9NRL2 1556 aaPredicted RBP30.71■■■□□ 2.51
GARNL3-215ENST00000478702 PEG3Q9GZU2 1588 aa30.66■■■□□ 2.5
GARNL3-215ENST00000478702 BAZ1BQ9UIG0 1483 aaKnown RBP30.64■■■□□ 2.5
GARNL3-215ENST00000478702 THOC2Q8NI27 1593 aaKnown RBP30.53■■■□□ 2.48
GARNL3-215ENST00000478702 MROH2BQ7Z745 1585 aa30.49■■■□□ 2.47
GARNL3-215ENST00000478702 LAMC3Q9Y6N6 1575 aa30.47■■■□□ 2.47
GARNL3-215ENST00000478702 KIF21AQ7Z4S6 1674 aa30.43■■■□□ 2.46
GARNL3-215ENST00000478702 PDS5BQ9NTI5 1447 aa30.21■■■□□ 2.43
GARNL3-215ENST00000478702 WIZO95785 1651 aa30.18■■■□□ 2.42
GARNL3-215ENST00000478702 CADPSQ9ULU8 1353 aa30.1■■■□□ 2.41
GARNL3-215ENST00000478702 MRC2Q9UBG0 1479 aa30.01■■■□□ 2.4
GARNL3-215ENST00000478702 WDR62O43379 1518 aa30■■■□□ 2.39
GARNL3-215ENST00000478702 CEP164Q9UPV0 1460 aa29.84■■■□□ 2.37
GARNL3-215ENST00000478702 FANCD2Q9BXW9 1451 aa29.8■■■□□ 2.36
GARNL3-215ENST00000478702 CFTRP13569 1480 aa29.74■■■□□ 2.35
GARNL3-215ENST00000478702 RSF1Q96T23 1441 aaPredicted RBP29.72■■■□□ 2.35
GARNL3-215ENST00000478702 TOP2AP11388 1531 aaKnown RBP29.71■■■□□ 2.35
GARNL3-215ENST00000478702 TRIM41Q8WV44 630 aa29.66■■■□□ 2.34
GARNL3-215ENST00000478702 PRDM2Q13029 1718 aa29.63■■■□□ 2.33
GARNL3-215ENST00000478702 URB2Q14146 1524 aaKnown RBP29.61■■■□□ 2.33
GARNL3-215ENST00000478702 OSCARQ8IYS5 282 aa29.41■■■□□ 2.3
GARNL3-215ENST00000478702 CCDC88BA6NC98 1476 aa29.36■■■□□ 2.29
GARNL3-215ENST00000478702 ZNF608Q9ULD9 1512 aaPredicted RBP29.28■■■□□ 2.28
GARNL3-215ENST00000478702 IFT140Q96RY7 1462 aa29.24■■■□□ 2.27
GARNL3-215ENST00000478702 TOPBP1Q92547 1522 aa29.24■■■□□ 2.27
GARNL3-215ENST00000478702 RIMBP3CA6NJZ7 1639 aa29.23■■■□□ 2.27
GARNL3-215ENST00000478702 RIMBP3BA6NNM3 1639 aa29.23■■■□□ 2.27
GARNL3-215ENST00000478702 RIMBP3Q9UFD9 1639 aa29.23■■■□□ 2.27
GARNL3-215ENST00000478702 EIF4G3O43432 1585 aaKnown RBP29.15■■■□□ 2.26
GARNL3-215ENST00000478702 DNMBPQ6XZF7 1577 aa29.12■■■□□ 2.25
GARNL3-215ENST00000478702 ABCC8Q09428 1581 aa29.09■■■□□ 2.25
GARNL3-215ENST00000478702 TARBP1Q13395 1621 aaKnown RBP29.05■■■□□ 2.24
GARNL3-215ENST00000478702 ARHGEF11O15085 1522 aa29.05■■■□□ 2.24
GARNL3-215ENST00000478702 CHD1O14646 1710 aa29.05■■■□□ 2.24
GARNL3-215ENST00000478702 AQRO60306 1485 aaKnown RBP eCLIP28.94■■■□□ 2.22
GARNL3-215ENST00000478702 POLA1P09884 1462 aaPredicted RBP28.91■■■□□ 2.22
GARNL3-215ENST00000478702 RAD54L2Q9Y4B4 1467 aa28.81■■■□□ 2.2
GARNL3-215ENST00000478702 CYB5RLQ6IPT4 315 aa28.76■■■□□ 2.19
GARNL3-215ENST00000478702 ARAP1Q96P48 1450 aa28.76■■■□□ 2.19
GARNL3-215ENST00000478702 SOGA1O94964 1423 aa28.72■■■□□ 2.19
GARNL3-215ENST00000478702 FBLN2P98095 1184 aa28.7■■■□□ 2.18
GARNL3-215ENST00000478702 TDRD9Q8NDG6 1382 aaKnown RBP28.7■■■□□ 2.18
GARNL3-215ENST00000478702 FGD5Q6ZNL6 1462 aa28.7■■■□□ 2.18
GARNL3-215ENST00000478702 WDR97A6NE52 1622 aa28.69■■■□□ 2.18
GARNL3-215ENST00000478702 CUX1P39880 1505 aa28.66■■■□□ 2.18
GARNL3-215ENST00000478702 SNAPC4Q5SXM2 1469 aa28.66■■■□□ 2.18
GARNL3-215ENST00000478702 CLASP1Q7Z460 1538 aa28.63■■■□□ 2.17
GARNL3-215ENST00000478702 PBRM1Q86U86 1689 aa28.55■■■□□ 2.16
GARNL3-215ENST00000478702 MAGI1Q96QZ7 1491 aaPredicted RBP28.55■■■□□ 2.16
GARNL3-215ENST00000478702 SYNJ1O43426 1573 aa28.54■■■□□ 2.16
GARNL3-215ENST00000478702 GRIN2BQ13224 1484 aa28.52■■■□□ 2.16
GARNL3-215ENST00000478702 TRHP20396 242 aaPredicted RBP28.48■■■□□ 2.15
GARNL3-215ENST00000478702 CHMP7Q8WUX9 453 aaPredicted RBP28.46■■■□□ 2.15
GARNL3-215ENST00000478702 SYNJ2O15056 1496 aa28.46■■■□□ 2.15
GARNL3-215ENST00000478702 ABCA5Q8WWZ7 1642 aa28.41■■■□□ 2.14
GARNL3-215ENST00000478702 SUPT5HO00267 1087 aaKnown RBP28.41■■■□□ 2.14
GARNL3-215ENST00000478702 GAPVD1Q14C86 1478 aa28.39■■■□□ 2.13
GARNL3-215ENST00000478702 ABCA10Q8WWZ4 1543 aa28.36■■■□□ 2.13
GARNL3-215ENST00000478702 BIVM-ERCC5R4GMW8 1640 aa28.21■■■□□ 2.11
GARNL3-215ENST00000478702 ERCC6L2Q5T890 1561 aa28.2■■■□□ 2.1
GARNL3-215ENST00000478702 ADAMTS12P58397 1594 aa28.19■■■□□ 2.1
GARNL3-215ENST00000478702 GRIN2AQ12879 1464 aa28.18■■■□□ 2.1
GARNL3-215ENST00000478702 TOP2BQ02880 1626 aa28.15■■■□□ 2.1
GARNL3-215ENST00000478702 CEP170Q5SW79 1584 aa28.15■■■□□ 2.1
GARNL3-215ENST00000478702 WRNQ14191 1432 aaPredicted RBP eCLIP28.12■■■□□ 2.09
GARNL3-215ENST00000478702 NUP160Q12769 1436 aa28.09■■■□□ 2.09
GARNL3-215ENST00000478702 SHROOM2Q13796 1616 aa28.08■■■□□ 2.09
GARNL3-215ENST00000478702 FHAD1B1AJZ9 1412 aa28.01■■■□□ 2.07
GARNL3-215ENST00000478702 ERICH3Q5RHP9 1530 aa28■■■□□ 2.07
GARNL3-215ENST00000478702 KIF13AQ9H1H9 1805 aa27.91■■■□□ 2.06
GARNL3-215ENST00000478702 RUSC2Q8N2Y8 1516 aa27.81■■■□□ 2.04
GARNL3-215ENST00000478702 PRG4Q92954 1404 aaPredicted RBP27.8■■■□□ 2.04
GARNL3-215ENST00000478702 AEBP2Q6ZN18 517 aaPredicted RBP27.79■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms