RNA–Protein interactions for RNA: ENST00000478616.1

SREBF1-212, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 5

Gene SREBF1, Length 882 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-212ENST00000478616 NISCHQ9Y2I1 1504 aa46.64■■■■■ 5.06
SREBF1-212ENST00000478616 CCDC180Q9P1Z9 1646 aa41.59■■■■■ 4.25
SREBF1-212ENST00000478616 ABCC9O60706 1549 aa40.96■■■■■ 4.15
SREBF1-212ENST00000478616 RB1CC1Q8TDY2 1594 aa39.21■■■■□ 3.87
SREBF1-212ENST00000478616 NACADO15069 1562 aa39.11■■■■□ 3.85
SREBF1-212ENST00000478616 DCAF8L2P0C7V8 631 aa38.83■■■■□ 3.81
SREBF1-212ENST00000478616 ZCCHC6Q5VYS8 1495 aaKnown RBP38.81■■■■□ 3.8
SREBF1-212ENST00000478616 MYO15BQ96JP2 1530 aa38.8■■■■□ 3.8
SREBF1-212ENST00000478616 UNC13AQ9UPW8 1703 aa38.59■■■■□ 3.77
SREBF1-212ENST00000478616 DCAF1Q9Y4B6 1507 aa38.55■■■■□ 3.76
SREBF1-212ENST00000478616 BICRAQ9NZM4 1560 aa38.26■■■■□ 3.72
SREBF1-212ENST00000478616 PABPN1Q86U42 306 aaKnown RBP eCLIP38.19■■■■□ 3.7
SREBF1-212ENST00000478616 DNAJC5BQ9UF47 199 aa38.01■■■■□ 3.68
SREBF1-212ENST00000478616 SCRIBQ14160 1630 aa37.93■■■■□ 3.66
SREBF1-212ENST00000478616 SHROOM4Q9ULL8 1493 aa37.58■■■■□ 3.61
SREBF1-212ENST00000478616 EIF4G1Q04637 1599 aaKnown RBP37.15■■■■□ 3.54
SREBF1-212ENST00000478616 CC2D2AQ9P2K1 1620 aa37.08■■■■□ 3.53
SREBF1-212ENST00000478616 CECR2Q9BXF3 1484 aa36.8■■■■□ 3.48
SREBF1-212ENST00000478616 SMARCA4P51532 1647 aa36.27■■■■□ 3.4
SREBF1-212ENST00000478616 NCAPD3P42695 1498 aa36.12■■■■□ 3.37
SREBF1-212ENST00000478616 ATAD2BQ9ULI0 1458 aa36.12■■■■□ 3.37
SREBF1-212ENST00000478616 BAZ1AQ9NRL2 1556 aaPredicted RBP36.09■■■■□ 3.37
SREBF1-212ENST00000478616 MROH2BQ7Z745 1585 aa35.99■■■■□ 3.35
SREBF1-212ENST00000478616 SMARCA2P51531 1590 aa35.98■■■■□ 3.35
SREBF1-212ENST00000478616 PEG3Q9GZU2 1588 aa35.94■■■■□ 3.34
SREBF1-212ENST00000478616 HMGXB3Q12766 1538 aa35.93■■■■□ 3.34
SREBF1-212ENST00000478616 BAZ1BQ9UIG0 1483 aaKnown RBP35.72■■■■□ 3.31
SREBF1-212ENST00000478616 WIZO95785 1651 aa35.6■■■■□ 3.29
SREBF1-212ENST00000478616 NESP48681 1621 aa35.44■■■■□ 3.26
SREBF1-212ENST00000478616 RSF1Q96T23 1441 aaPredicted RBP35.42■■■■□ 3.26
SREBF1-212ENST00000478616 LAMC3Q9Y6N6 1575 aa35.19■■■■□ 3.22
SREBF1-212ENST00000478616 ERCC6Q03468 1493 aa35.16■■■■□ 3.22
SREBF1-212ENST00000478616 TOP2AP11388 1531 aaKnown RBP35.12■■■■□ 3.21
SREBF1-212ENST00000478616 KIF21AQ7Z4S6 1674 aa35.04■■■■□ 3.2
SREBF1-212ENST00000478616 CADPSQ9ULU8 1353 aa35■■■■□ 3.19
SREBF1-212ENST00000478616 THOC2Q8NI27 1593 aaKnown RBP34.99■■■■□ 3.19
SREBF1-212ENST00000478616 CUX2O14529 1486 aa34.98■■■■□ 3.19
SREBF1-212ENST00000478616 PDS5BQ9NTI5 1447 aa34.86■■■■□ 3.17
SREBF1-212ENST00000478616 CFTRP13569 1480 aa34.79■■■■□ 3.16
SREBF1-212ENST00000478616 CCDC88BA6NC98 1476 aa34.73■■■■□ 3.15
SREBF1-212ENST00000478616 FANCD2Q9BXW9 1451 aa34.62■■■■□ 3.13
SREBF1-212ENST00000478616 MRC2Q9UBG0 1479 aa34.61■■■■□ 3.13
SREBF1-212ENST00000478616 WDR62O43379 1518 aa34.59■■■■□ 3.13
SREBF1-212ENST00000478616 PRDM2Q13029 1718 aa34.58■■■■□ 3.13
SREBF1-212ENST00000478616 CEP164Q9UPV0 1460 aa34.57■■■■□ 3.12
SREBF1-212ENST00000478616 URB2Q14146 1524 aaKnown RBP34.4■■■■□ 3.1
SREBF1-212ENST00000478616 DNAJC5Q9H3Z4 198 aa34.3■■■■□ 3.08
SREBF1-212ENST00000478616 SUPT5HO00267 1087 aaKnown RBP34.12■■■■□ 3.05
SREBF1-212ENST00000478616 TOPBP1Q92547 1522 aa34.08■■■■□ 3.05
SREBF1-212ENST00000478616 DNMBPQ6XZF7 1577 aa34■■■■□ 3.03
SREBF1-212ENST00000478616 ABCC8Q09428 1581 aa33.9■■■■□ 3.02
SREBF1-212ENST00000478616 ZNF608Q9ULD9 1512 aaPredicted RBP33.87■■■■□ 3.01
SREBF1-212ENST00000478616 IFT140Q96RY7 1462 aa33.86■■■■□ 3.01
SREBF1-212ENST00000478616 TARBP1Q13395 1621 aaKnown RBP33.82■■■■□ 3
SREBF1-212ENST00000478616 POLA1P09884 1462 aaPredicted RBP33.78■■■■□ 3
SREBF1-212ENST00000478616 CUX1P39880 1505 aa33.77■■■■□ 3
SREBF1-212ENST00000478616 EIF4G3O43432 1585 aaKnown RBP33.7■■■□□ 2.99
SREBF1-212ENST00000478616 RAD54L2Q9Y4B4 1467 aa33.66■■■□□ 2.98
SREBF1-212ENST00000478616 FGD5Q6ZNL6 1462 aa33.64■■■□□ 2.98
SREBF1-212ENST00000478616 AQRO60306 1485 aaKnown RBP eCLIP33.58■■■□□ 2.978e-8■■■□□ 18.3
SREBF1-212ENST00000478616 SOGA1O94964 1423 aa33.54■■■□□ 2.96
SREBF1-212ENST00000478616 WDR97A6NE52 1622 aa33.51■■■□□ 2.96
SREBF1-212ENST00000478616 TDRD9Q8NDG6 1382 aaKnown RBP33.43■■■□□ 2.94
SREBF1-212ENST00000478616 SYNJ1O43426 1573 aa33.4■■■□□ 2.94
SREBF1-212ENST00000478616 OSCARQ8IYS5 282 aa33.4■■■□□ 2.94
SREBF1-212ENST00000478616 BIVM-ERCC5R4GMW8 1640 aa33.39■■■□□ 2.94
SREBF1-212ENST00000478616 CHD1O14646 1710 aa33.38■■■□□ 2.93
SREBF1-212ENST00000478616 TOP2BQ02880 1626 aa33.35■■■□□ 2.93
SREBF1-212ENST00000478616 WRNQ14191 1432 aaPredicted RBP eCLIP33.31■■■□□ 2.92
SREBF1-212ENST00000478616 ABCA10Q8WWZ4 1543 aa33.29■■■□□ 2.92
SREBF1-212ENST00000478616 ABCA5Q8WWZ7 1642 aa33.26■■■□□ 2.91
SREBF1-212ENST00000478616 SNAPC4Q5SXM2 1469 aa33.24■■■□□ 2.91
SREBF1-212ENST00000478616 PBRM1Q86U86 1689 aa33.23■■■□□ 2.91
SREBF1-212ENST00000478616 GRIN2BQ13224 1484 aa33.18■■■□□ 2.9
SREBF1-212ENST00000478616 GAPVD1Q14C86 1478 aa33.17■■■□□ 2.9
SREBF1-212ENST00000478616 MAGI1Q96QZ7 1491 aaPredicted RBP33.13■■■□□ 2.89
SREBF1-212ENST00000478616 RIMBP3CA6NJZ7 1639 aa33.1■■■□□ 2.89
SREBF1-212ENST00000478616 RIMBP3BA6NNM3 1639 aa33.1■■■□□ 2.89
SREBF1-212ENST00000478616 RIMBP3Q9UFD9 1639 aa33.1■■■□□ 2.89
SREBF1-212ENST00000478616 FBLN2P98095 1184 aa33.03■■■□□ 2.88
SREBF1-212ENST00000478616 ARHGEF11O15085 1522 aa33.02■■■□□ 2.88
SREBF1-212ENST00000478616 SYNJ2O15056 1496 aa33.02■■■□□ 2.88
SREBF1-212ENST00000478616 CLASP1Q7Z460 1538 aa33■■■□□ 2.87
SREBF1-212ENST00000478616 TRIM41Q8WV44 630 aa32.94■■■□□ 2.86
SREBF1-212ENST00000478616 ADAMTS12P58397 1594 aa32.93■■■□□ 2.86
SREBF1-212ENST00000478616 CHMP7Q8WUX9 453 aaPredicted RBP32.9■■■□□ 2.86
SREBF1-212ENST00000478616 ERICH3Q5RHP9 1530 aa32.85■■■□□ 2.85
SREBF1-212ENST00000478616 GRIN2AQ12879 1464 aa32.81■■■□□ 2.84
SREBF1-212ENST00000478616 ARAP1Q96P48 1450 aa32.78■■■□□ 2.84
SREBF1-212ENST00000478616 FHAD1B1AJZ9 1412 aa32.76■■■□□ 2.83
SREBF1-212ENST00000478616 CEP170Q5SW79 1584 aa32.75■■■□□ 2.83
SREBF1-212ENST00000478616 NUP160Q12769 1436 aa32.72■■■□□ 2.83
SREBF1-212ENST00000478616 CYB5RLQ6IPT4 315 aa32.61■■■□□ 2.81
SREBF1-212ENST00000478616 IGF1RP08069 1367 aa32.59■■■□□ 2.81
SREBF1-212ENST00000478616 ERCC6L2Q5T890 1561 aa32.59■■■□□ 2.81
SREBF1-212ENST00000478616 KIF27Q86VH2 1401 aa32.58■■■□□ 2.81
SREBF1-212ENST00000478616 SHROOM2Q13796 1616 aa32.57■■■□□ 2.8
SREBF1-212ENST00000478616 CUL7Q14999 1698 aa32.5■■■□□ 2.79
SREBF1-212ENST00000478616 RUSC2Q8N2Y8 1516 aa32.46■■■□□ 2.79
SREBF1-212ENST00000478616 CARMIL1Q5VZK9 1371 aa32.32■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms