RNA–Protein interactions for RNA: ENST00000478596.5

USP11-207, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 970 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-207ENST00000478596 NISCHQ9Y2I1 1504 aa36.9■■■■□ 3.5
USP11-207ENST00000478596 ABCC9O60706 1549 aa34.45■■■■□ 3.11
USP11-207ENST00000478596 CCDC180Q9P1Z9 1646 aa33.51■■■□□ 2.96
USP11-207ENST00000478596 DNAJC5BQ9UF47 199 aa33.25■■■□□ 2.91
USP11-207ENST00000478596 RB1CC1Q8TDY2 1594 aa32.39■■■□□ 2.78
USP11-207ENST00000478596 NACADO15069 1562 aa31.97■■■□□ 2.71
USP11-207ENST00000478596 PABPN1Q86U42 306 aaKnown RBP eCLIP31.93■■■□□ 2.7
USP11-207ENST00000478596 UNC13AQ9UPW8 1703 aa31.53■■■□□ 2.64
USP11-207ENST00000478596 BICRAQ9NZM4 1560 aa31.49■■■□□ 2.63
USP11-207ENST00000478596 DCAF8L2P0C7V8 631 aa31.48■■■□□ 2.63
USP11-207ENST00000478596 DNAJC5Q9H3Z4 198 aa31.3■■■□□ 2.6
USP11-207ENST00000478596 MYO15BQ96JP2 1530 aa31.27■■■□□ 2.6
USP11-207ENST00000478596 CECR2Q9BXF3 1484 aa31.19■■■□□ 2.58
USP11-207ENST00000478596 CC2D2AQ9P2K1 1620 aa31.07■■■□□ 2.56
USP11-207ENST00000478596 SHROOM4Q9ULL8 1493 aa31.06■■■□□ 2.56
USP11-207ENST00000478596 EIF4G1Q04637 1599 aaKnown RBP30.79■■■□□ 2.52
USP11-207ENST00000478596 DCAF1Q9Y4B6 1507 aa30.48■■■□□ 2.47
USP11-207ENST00000478596 SCRIBQ14160 1630 aa30.42■■■□□ 2.46
USP11-207ENST00000478596 ZCCHC6Q5VYS8 1495 aaKnown RBP30.38■■■□□ 2.45
USP11-207ENST00000478596 CUX2O14529 1486 aa30.18■■■□□ 2.42
USP11-207ENST00000478596 ERCC6Q03468 1493 aa29.83■■■□□ 2.37
USP11-207ENST00000478596 NCAPD3P42695 1498 aa29.56■■■□□ 2.32
USP11-207ENST00000478596 TRIM41Q8WV44 630 aa29.4■■■□□ 2.3
USP11-207ENST00000478596 NESP48681 1621 aa29.31■■■□□ 2.28
USP11-207ENST00000478596 ATAD2BQ9ULI0 1458 aa29.29■■■□□ 2.28
USP11-207ENST00000478596 THOC2Q8NI27 1593 aaKnown RBP29.23■■■□□ 2.27
USP11-207ENST00000478596 HMGXB3Q12766 1538 aa29.21■■■□□ 2.27
USP11-207ENST00000478596 SMARCA2P51531 1590 aa29.14■■■□□ 2.26
USP11-207ENST00000478596 LAMC3Q9Y6N6 1575 aa28.99■■■□□ 2.23
USP11-207ENST00000478596 SMARCA4P51532 1647 aa28.96■■■□□ 2.23
USP11-207ENST00000478596 BAZ1BQ9UIG0 1483 aaKnown RBP28.92■■■□□ 2.22
USP11-207ENST00000478596 PDS5BQ9NTI5 1447 aa28.89■■■□□ 2.22
USP11-207ENST00000478596 KIF21AQ7Z4S6 1674 aa28.84■■■□□ 2.21
USP11-207ENST00000478596 PEG3Q9GZU2 1588 aa28.75■■■□□ 2.19
USP11-207ENST00000478596 BAZ1AQ9NRL2 1556 aaPredicted RBP28.71■■■□□ 2.19
USP11-207ENST00000478596 MRC2Q9UBG0 1479 aa28.67■■■□□ 2.18
USP11-207ENST00000478596 WDR62O43379 1518 aa28.64■■■□□ 2.18
USP11-207ENST00000478596 OSCARQ8IYS5 282 aa28.62■■■□□ 2.17
USP11-207ENST00000478596 CADPSQ9ULU8 1353 aa28.59■■■□□ 2.17
USP11-207ENST00000478596 MROH2BQ7Z745 1585 aa28.39■■■□□ 2.14
USP11-207ENST00000478596 CEP164Q9UPV0 1460 aa28.35■■■□□ 2.13
USP11-207ENST00000478596 RIMBP3CA6NJZ7 1639 aa28.29■■■□□ 2.12
USP11-207ENST00000478596 RIMBP3BA6NNM3 1639 aa28.29■■■□□ 2.12
USP11-207ENST00000478596 RIMBP3Q9UFD9 1639 aa28.29■■■□□ 2.12
USP11-207ENST00000478596 FANCD2Q9BXW9 1451 aa28.23■■■□□ 2.11
USP11-207ENST00000478596 ARHGEF11O15085 1522 aa28.14■■■□□ 2.1
USP11-207ENST00000478596 CFTRP13569 1480 aa28.07■■■□□ 2.08
USP11-207ENST00000478596 URB2Q14146 1524 aaKnown RBP28.06■■■□□ 2.08
USP11-207ENST00000478596 CYB5RLQ6IPT4 315 aa27.98■■■□□ 2.07
USP11-207ENST00000478596 TRHP20396 242 aaPredicted RBP27.96■■■□□ 2.07
USP11-207ENST00000478596 WIZO95785 1651 aa27.94■■■□□ 2.06
USP11-207ENST00000478596 AEBP2Q6ZN18 517 aaPredicted RBP27.88■■■□□ 2.05
USP11-207ENST00000478596 ZNF608Q9ULD9 1512 aaPredicted RBP27.87■■■□□ 2.05
USP11-207ENST00000478596 IFT140Q96RY7 1462 aa27.85■■■□□ 2.05
USP11-207ENST00000478596 ARAP1Q96P48 1450 aa27.8■■■□□ 2.04
USP11-207ENST00000478596 RSF1Q96T23 1441 aaPredicted RBP27.69■■■□□ 2.02
USP11-207ENST00000478596 EIF4G3O43432 1585 aaKnown RBP27.64■■■□□ 2.01
USP11-207ENST00000478596 TOP2AP11388 1531 aaKnown RBP27.6■■■□□ 2.01
USP11-207ENST00000478596 TOPBP1Q92547 1522 aa27.58■■■□□ 2.01
USP11-207ENST00000478596 CHD1O14646 1710 aa27.55■■■□□ 2
USP11-207ENST00000478596 PRDM2Q13029 1718 aa27.54■■■□□ 2
USP11-207ENST00000478596 ABCC8Q09428 1581 aa27.5■■□□□ 1.99
USP11-207ENST00000478596 AQRO60306 1485 aaKnown RBP eCLIP27.49■■□□□ 1.99
USP11-207ENST00000478596 FBLN2P98095 1184 aa27.47■■□□□ 1.99
USP11-207ENST00000478596 TARBP1Q13395 1621 aaKnown RBP27.41■■□□□ 1.98
USP11-207ENST00000478596 DNMBPQ6XZF7 1577 aa27.39■■□□□ 1.97
USP11-207ENST00000478596 CLASP1Q7Z460 1538 aa27.32■■□□□ 1.96
USP11-207ENST00000478596 CCDC88BA6NC98 1476 aa27.3■■□□□ 1.96
USP11-207ENST00000478596 POLA1P09884 1462 aaPredicted RBP27.25■■□□□ 1.95
USP11-207ENST00000478596 SYNJ1O43426 1573 aa27.19■■□□□ 1.94
USP11-207ENST00000478596 SNAPC4Q5SXM2 1469 aa27.18■■□□□ 1.94
USP11-207ENST00000478596 TDRD9Q8NDG6 1382 aaKnown RBP27.17■■□□□ 1.94
USP11-207ENST00000478596 CHMP7Q8WUX9 453 aaPredicted RBP27.15■■□□□ 1.94
USP11-207ENST00000478596 RAD54L2Q9Y4B4 1467 aa27.13■■□□□ 1.93
USP11-207ENST00000478596 GAPVD1Q14C86 1478 aa27.11■■□□□ 1.93
USP11-207ENST00000478596 MAGI1Q96QZ7 1491 aaPredicted RBP27.11■■□□□ 1.93
USP11-207ENST00000478596 SOGA1O94964 1423 aa27.1■■□□□ 1.93
USP11-207ENST00000478596 WDR97A6NE52 1622 aa27.1■■□□□ 1.93
USP11-207ENST00000478596 SYNJ2O15056 1496 aa27.03■■□□□ 1.92
USP11-207ENST00000478596 GRIN2BQ13224 1484 aa27■■□□□ 1.91
USP11-207ENST00000478596 FGD5Q6ZNL6 1462 aa26.92■■□□□ 1.9
USP11-207ENST00000478596 ILDR1Q86SU0 546 aaPredicted RBP26.83■■□□□ 1.89
USP11-207ENST00000478596 ERCC6L2Q5T890 1561 aa26.78■■□□□ 1.88
USP11-207ENST00000478596 CUX1P39880 1505 aa26.74■■□□□ 1.87
USP11-207ENST00000478596 PBRM1Q86U86 1689 aa26.7■■□□□ 1.87
USP11-207ENST00000478596 KIF13AQ9H1H9 1805 aa26.68■■□□□ 1.86
USP11-207ENST00000478596 CEP170Q5SW79 1584 aa26.67■■□□□ 1.86
USP11-207ENST00000478596 GRIN2AQ12879 1464 aa26.64■■□□□ 1.86
USP11-207ENST00000478596 KDM4FA0A1W2PPD8 638 aa26.64■■□□□ 1.86
USP11-207ENST00000478596 NUP160Q12769 1436 aa26.63■■□□□ 1.85
USP11-207ENST00000478596 ABCA5Q8WWZ7 1642 aa26.61■■□□□ 1.85
USP11-207ENST00000478596 ABCA10Q8WWZ4 1543 aa26.6■■□□□ 1.85
USP11-207ENST00000478596 SHROOM2Q13796 1616 aa26.57■■□□□ 1.84
USP11-207ENST00000478596 ABCC10Q5T3U5 1492 aa26.54■■□□□ 1.84
USP11-207ENST00000478596 FAM69CQ0P6D2 419 aa26.52■■□□□ 1.84
USP11-207ENST00000478596 ADAMTS12P58397 1594 aa26.46■■□□□ 1.83
USP11-207ENST00000478596 MAPKBP1O60336 1514 aa26.42■■□□□ 1.82
USP11-207ENST00000478596 PRG4Q92954 1404 aaPredicted RBP26.4■■□□□ 1.82
USP11-207ENST00000478596 KDM6BO15054 1643 aa26.4■■□□□ 1.82
USP11-207ENST00000478596 FHAD1B1AJZ9 1412 aa26.39■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms