RNA–Protein interactions for RNA: ENST00000478209.1

PDZRN3-207, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 4

Gene PDZRN3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-207ENST00000478209 NISCHQ9Y2I1 1504 aa39.74■■■■□ 3.95
PDZRN3-207ENST00000478209 CCDC180Q9P1Z9 1646 aa35.33■■■■□ 3.25
PDZRN3-207ENST00000478209 ABCC9O60706 1549 aa34.49■■■■□ 3.11
PDZRN3-207ENST00000478209 RB1CC1Q8TDY2 1594 aa33.23■■■□□ 2.91
PDZRN3-207ENST00000478209 NACADO15069 1562 aa33.2■■■□□ 2.91
PDZRN3-207ENST00000478209 DCAF8L2P0C7V8 631 aa33.19■■■□□ 2.9
PDZRN3-207ENST00000478209 ZCCHC6Q5VYS8 1495 aaKnown RBP33.12■■■□□ 2.89
PDZRN3-207ENST00000478209 MYO15BQ96JP2 1530 aa33.01■■■□□ 2.87
PDZRN3-207ENST00000478209 DCAF1Q9Y4B6 1507 aa32.89■■■□□ 2.86
PDZRN3-207ENST00000478209 UNC13AQ9UPW8 1703 aa32.43■■■□□ 2.78
PDZRN3-207ENST00000478209 SCRIBQ14160 1630 aa32.23■■■□□ 2.75
PDZRN3-207ENST00000478209 PABPN1Q86U42 306 aaKnown RBP eCLIP32.21■■■□□ 2.75
PDZRN3-207ENST00000478209 BICRAQ9NZM4 1560 aa32.16■■■□□ 2.74
PDZRN3-207ENST00000478209 SHROOM4Q9ULL8 1493 aa31.91■■■□□ 2.7
PDZRN3-207ENST00000478209 DNAJC5BQ9UF47 199 aa31.51■■■□□ 2.63
PDZRN3-207ENST00000478209 EIF4G1Q04637 1599 aaKnown RBP31.34■■■□□ 2.61
PDZRN3-207ENST00000478209 CC2D2AQ9P2K1 1620 aa31.2■■■□□ 2.58
PDZRN3-207ENST00000478209 CECR2Q9BXF3 1484 aa30.98■■■□□ 2.55
PDZRN3-207ENST00000478209 SMARCA4P51532 1647 aa30.84■■■□□ 2.53
PDZRN3-207ENST00000478209 BAZ1AQ9NRL2 1556 aaPredicted RBP30.83■■■□□ 2.53
PDZRN3-207ENST00000478209 SMARCA2P51531 1590 aa30.64■■■□□ 2.5
PDZRN3-207ENST00000478209 ATAD2BQ9ULI0 1458 aa30.63■■■□□ 2.49
PDZRN3-207ENST00000478209 MROH2BQ7Z745 1585 aa30.62■■■□□ 2.49
PDZRN3-207ENST00000478209 NCAPD3P42695 1498 aa30.61■■■□□ 2.49
PDZRN3-207ENST00000478209 PEG3Q9GZU2 1588 aa30.52■■■□□ 2.48
PDZRN3-207ENST00000478209 HMGXB3Q12766 1538 aa30.49■■■□□ 2.47
PDZRN3-207ENST00000478209 BAZ1BQ9UIG0 1483 aaKnown RBP30.42■■■□□ 2.46
PDZRN3-207ENST00000478209 WIZO95785 1651 aa30.3■■■□□ 2.44
PDZRN3-207ENST00000478209 RSF1Q96T23 1441 aaPredicted RBP30.29■■■□□ 2.44
PDZRN3-207ENST00000478209 TOP2AP11388 1531 aaKnown RBP30.01■■■□□ 2.39
PDZRN3-207ENST00000478209 NESP48681 1621 aa29.84■■■□□ 2.37
PDZRN3-207ENST00000478209 LAMC3Q9Y6N6 1575 aa29.81■■■□□ 2.36
PDZRN3-207ENST00000478209 ERCC6Q03468 1493 aa29.76■■■□□ 2.35
PDZRN3-207ENST00000478209 CADPSQ9ULU8 1353 aa29.73■■■□□ 2.35
PDZRN3-207ENST00000478209 PDS5BQ9NTI5 1447 aa29.62■■■□□ 2.33
PDZRN3-207ENST00000478209 CCDC88BA6NC98 1476 aa29.62■■■□□ 2.33
PDZRN3-207ENST00000478209 SUPT5HO00267 1087 aaKnown RBP29.6■■■□□ 2.33
PDZRN3-207ENST00000478209 CFTRP13569 1480 aa29.55■■■□□ 2.32
PDZRN3-207ENST00000478209 KIF21AQ7Z4S6 1674 aa29.51■■■□□ 2.31
PDZRN3-207ENST00000478209 CUX2O14529 1486 aa29.41■■■□□ 2.3
PDZRN3-207ENST00000478209 FANCD2Q9BXW9 1451 aa29.4■■■□□ 2.3
PDZRN3-207ENST00000478209 THOC2Q8NI27 1593 aaKnown RBP29.39■■■□□ 2.3
PDZRN3-207ENST00000478209 CEP164Q9UPV0 1460 aa29.38■■■□□ 2.29
PDZRN3-207ENST00000478209 PRDM2Q13029 1718 aa29.37■■■□□ 2.29
PDZRN3-207ENST00000478209 MRC2Q9UBG0 1479 aa29.31■■■□□ 2.28
PDZRN3-207ENST00000478209 WDR62O43379 1518 aa29.2■■■□□ 2.26
PDZRN3-207ENST00000478209 URB2Q14146 1524 aaKnown RBP29.08■■■□□ 2.25
PDZRN3-207ENST00000478209 ABCC8Q09428 1581 aa28.96■■■□□ 2.23
PDZRN3-207ENST00000478209 TOPBP1Q92547 1522 aa28.93■■■□□ 2.22
PDZRN3-207ENST00000478209 DNMBPQ6XZF7 1577 aa28.92■■■□□ 2.22
PDZRN3-207ENST00000478209 IFT140Q96RY7 1462 aa28.75■■■□□ 2.19
PDZRN3-207ENST00000478209 CUX1P39880 1505 aa28.73■■■□□ 2.19
PDZRN3-207ENST00000478209 POLA1P09884 1462 aaPredicted RBP28.69■■■□□ 2.18
PDZRN3-207ENST00000478209 FGD5Q6ZNL6 1462 aa28.64■■■□□ 2.17
PDZRN3-207ENST00000478209 WRNQ14191 1432 aaPredicted RBP eCLIP28.6■■■□□ 2.17
PDZRN3-207ENST00000478209 TARBP1Q13395 1621 aaKnown RBP28.59■■■□□ 2.17
PDZRN3-207ENST00000478209 SOGA1O94964 1423 aa28.58■■■□□ 2.17
PDZRN3-207ENST00000478209 ZNF608Q9ULD9 1512 aaPredicted RBP28.58■■■□□ 2.17
PDZRN3-207ENST00000478209 RAD54L2Q9Y4B4 1467 aa28.55■■■□□ 2.16
PDZRN3-207ENST00000478209 TOP2BQ02880 1626 aa28.51■■■□□ 2.15
PDZRN3-207ENST00000478209 BIVM-ERCC5R4GMW8 1640 aa28.51■■■□□ 2.15
PDZRN3-207ENST00000478209 SYNJ1O43426 1573 aa28.5■■■□□ 2.15
PDZRN3-207ENST00000478209 EIF4G3O43432 1585 aaKnown RBP28.5■■■□□ 2.15
PDZRN3-207ENST00000478209 AQRO60306 1485 aaKnown RBP eCLIP28.43■■■□□ 2.14
PDZRN3-207ENST00000478209 WDR97A6NE52 1622 aa28.42■■■□□ 2.14
PDZRN3-207ENST00000478209 TDRD9Q8NDG6 1382 aaKnown RBP28.39■■■□□ 2.14
PDZRN3-207ENST00000478209 DNAJC5Q9H3Z4 198 aa28.37■■■□□ 2.13
PDZRN3-207ENST00000478209 ABCA10Q8WWZ4 1543 aa28.36■■■□□ 2.13
PDZRN3-207ENST00000478209 GRIN2BQ13224 1484 aa28.25■■■□□ 2.11
PDZRN3-207ENST00000478209 GAPVD1Q14C86 1478 aa28.25■■■□□ 2.11
PDZRN3-207ENST00000478209 ABCA5Q8WWZ7 1642 aa28.24■■■□□ 2.11
PDZRN3-207ENST00000478209 SNAPC4Q5SXM2 1469 aa28.2■■■□□ 2.1
PDZRN3-207ENST00000478209 PBRM1Q86U86 1689 aa28.19■■■□□ 2.1
PDZRN3-207ENST00000478209 OSCARQ8IYS5 282 aa28.18■■■□□ 2.1
PDZRN3-207ENST00000478209 MAGI1Q96QZ7 1491 aaPredicted RBP28.17■■■□□ 2.1
PDZRN3-207ENST00000478209 CHD1O14646 1710 aa28.12■■■□□ 2.09
PDZRN3-207ENST00000478209 FBLN2P98095 1184 aa28.11■■■□□ 2.09
PDZRN3-207ENST00000478209 SYNJ2O15056 1496 aa28.06■■■□□ 2.08
PDZRN3-207ENST00000478209 CHMP7Q8WUX9 453 aaPredicted RBP28.04■■■□□ 2.08
PDZRN3-207ENST00000478209 ERICH3Q5RHP9 1530 aa28.03■■■□□ 2.08
PDZRN3-207ENST00000478209 KIF27Q86VH2 1401 aa28■■■□□ 2.07
PDZRN3-207ENST00000478209 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
PDZRN3-207ENST00000478209 TRIM41Q8WV44 630 aa27.96■■■□□ 2.07
PDZRN3-207ENST00000478209 FHAD1B1AJZ9 1412 aa27.93■■■□□ 2.06
PDZRN3-207ENST00000478209 GRIN2AQ12879 1464 aa27.88■■■□□ 2.05
PDZRN3-207ENST00000478209 IGF1RP08069 1367 aa27.83■■■□□ 2.05
PDZRN3-207ENST00000478209 CUL7Q14999 1698 aa27.81■■■□□ 2.04
PDZRN3-207ENST00000478209 CLASP1Q7Z460 1538 aa27.81■■■□□ 2.04
PDZRN3-207ENST00000478209 NUP160Q12769 1436 aa27.75■■■□□ 2.03
PDZRN3-207ENST00000478209 CEP170Q5SW79 1584 aa27.73■■■□□ 2.03
PDZRN3-207ENST00000478209 ARHGEF11O15085 1522 aa27.72■■■□□ 2.03
PDZRN3-207ENST00000478209 RIMBP3CA6NJZ7 1639 aa27.72■■■□□ 2.03
PDZRN3-207ENST00000478209 RIMBP3BA6NNM3 1639 aa27.72■■■□□ 2.03
PDZRN3-207ENST00000478209 RIMBP3Q9UFD9 1639 aa27.72■■■□□ 2.03
PDZRN3-207ENST00000478209 RUSC2Q8N2Y8 1516 aa27.71■■■□□ 2.03
PDZRN3-207ENST00000478209 CARMIL1Q5VZK9 1371 aa27.7■■■□□ 2.02
PDZRN3-207ENST00000478209 CHIC1Q5VXU3 224 aa27.64■■■□□ 2.02
PDZRN3-207ENST00000478209 RAPGEF2Q9Y4G8 1499 aa27.55■■■□□ 2
PDZRN3-207ENST00000478209 EEA1Q15075 1411 aa27.52■■■□□ 2
PDZRN3-207ENST00000478209 SHROOM2Q13796 1616 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms