RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 NISCHQ9Y2I1 1504 aa26.54■■□□□ 1.84
PTPRF-212ENST00000477970 CCDC180Q9P1Z9 1646 aa23.7■■□□□ 1.38
PTPRF-212ENST00000477970 ABCC9O60706 1549 aa22.76■■□□□ 1.23
PTPRF-212ENST00000477970 ZCCHC6Q5VYS8 1495 aaKnown RBP22.44■■□□□ 1.18
PTPRF-212ENST00000477970 NACADO15069 1562 aa22.16■■□□□ 1.14
PTPRF-212ENST00000477970 MYO15BQ96JP2 1530 aa22.15■■□□□ 1.14
PTPRF-212ENST00000477970 RB1CC1Q8TDY2 1594 aa22.15■■□□□ 1.14
PTPRF-212ENST00000477970 DCAF1Q9Y4B6 1507 aa22.06■■□□□ 1.12
PTPRF-212ENST00000477970 SHROOM4Q9ULL8 1493 aa21.79■■□□□ 1.08
PTPRF-212ENST00000477970 UNC13AQ9UPW8 1703 aa21.75■■□□□ 1.07
PTPRF-212ENST00000477970 DCAF8L2P0C7V8 631 aa21.56■■□□□ 1.04
PTPRF-212ENST00000477970 BICRAQ9NZM4 1560 aa21.47■■□□□ 1.03
PTPRF-212ENST00000477970 SCRIBQ14160 1630 aa21.33■■□□□ 1.01
PTPRF-212ENST00000477970 SUPT5HO00267 1087 aaKnown RBP21.22■□□□□ 0.99
PTPRF-212ENST00000477970 PABPN1Q86U42 306 aaKnown RBP eCLIP21.12■□□□□ 0.97
PTPRF-212ENST00000477970 EIF4G1Q04637 1599 aaKnown RBP20.86■□□□□ 0.93
PTPRF-212ENST00000477970 DNAJC5BQ9UF47 199 aa20.8■□□□□ 0.92
PTPRF-212ENST00000477970 RSF1Q96T23 1441 aaPredicted RBP20.76■□□□□ 0.91
PTPRF-212ENST00000477970 CC2D2AQ9P2K1 1620 aa20.76■□□□□ 0.91
PTPRF-212ENST00000477970 CHIC1Q5VXU3 224 aa20.74■□□□□ 0.91
PTPRF-212ENST00000477970 SMARCA4P51532 1647 aa20.53■□□□□ 0.88
PTPRF-212ENST00000477970 CECR2Q9BXF3 1484 aa20.52■□□□□ 0.88
PTPRF-212ENST00000477970 BAZ1AQ9NRL2 1556 aaPredicted RBP20.5■□□□□ 0.87
PTPRF-212ENST00000477970 MROH2BQ7Z745 1585 aa20.48■□□□□ 0.87
PTPRF-212ENST00000477970 PEG3Q9GZU2 1588 aa20.44■□□□□ 0.86
PTPRF-212ENST00000477970 SMARCA2P51531 1590 aa20.4■□□□□ 0.86
PTPRF-212ENST00000477970 NCAPD3P42695 1498 aa20.38■□□□□ 0.85
PTPRF-212ENST00000477970 HMGXB3Q12766 1538 aa20.36■□□□□ 0.85
PTPRF-212ENST00000477970 WIZO95785 1651 aa20.36■□□□□ 0.85
PTPRF-212ENST00000477970 ATAD2BQ9ULI0 1458 aa20.34■□□□□ 0.85
PTPRF-212ENST00000477970 TOP2AP11388 1531 aaKnown RBP20.22■□□□□ 0.83
PTPRF-212ENST00000477970 BAZ1BQ9UIG0 1483 aaKnown RBP20.14■□□□□ 0.81
PTPRF-212ENST00000477970 TRIM41Q8WV44 630 aa19.98■□□□□ 0.79
PTPRF-212ENST00000477970 CCDC88BA6NC98 1476 aa19.95■□□□□ 0.78
PTPRF-212ENST00000477970 LAMC3Q9Y6N6 1575 aa19.9■□□□□ 0.78
PTPRF-212ENST00000477970 LOC105371045A0A1W2PR82 267 aa19.86■□□□□ 0.77
PTPRF-212ENST00000477970 PRDM2Q13029 1718 aa19.77■□□□□ 0.75
PTPRF-212ENST00000477970 NESP48681 1621 aa19.72■□□□□ 0.75
PTPRF-212ENST00000477970 CADPSQ9ULU8 1353 aa19.69■□□□□ 0.74
PTPRF-212ENST00000477970 KIF21AQ7Z4S6 1674 aa19.68■□□□□ 0.74
PTPRF-212ENST00000477970 ABCC8Q09428 1581 aa19.67■□□□□ 0.74
PTPRF-212ENST00000477970 THOC2Q8NI27 1593 aaKnown RBP19.65■□□□□ 0.74
PTPRF-212ENST00000477970 CFTRP13569 1480 aa19.65■□□□□ 0.74
PTPRF-212ENST00000477970 ERCC6Q03468 1493 aa19.63■□□□□ 0.73
PTPRF-212ENST00000477970 PDS5BQ9NTI5 1447 aa19.63■□□□□ 0.73
PTPRF-212ENST00000477970 CUX2O14529 1486 aa19.63■□□□□ 0.73
PTPRF-212ENST00000477970 EEA1Q15075 1411 aa19.61■□□□□ 0.73
PTPRF-212ENST00000477970 HRCP23327 699 aa19.56■□□□□ 0.72
PTPRF-212ENST00000477970 PCGF6Q9BYE7 350 aa19.54■□□□□ 0.72
PTPRF-212ENST00000477970 TRIM26Q12899 539 aaPredicted RBP19.52■□□□□ 0.72
PTPRF-212ENST00000477970 FAM9AQ8IZU1 332 aaPredicted RBP19.52■□□□□ 0.72
PTPRF-212ENST00000477970 WRNQ14191 1432 aaPredicted RBP eCLIP19.5■□□□□ 0.71
PTPRF-212ENST00000477970 WDR62O43379 1518 aa19.49■□□□□ 0.71
PTPRF-212ENST00000477970 MRC2Q9UBG0 1479 aa19.47■□□□□ 0.71
PTPRF-212ENST00000477970 FANCD2Q9BXW9 1451 aa19.47■□□□□ 0.71
PTPRF-212ENST00000477970 CEP164Q9UPV0 1460 aa19.47■□□□□ 0.71
PTPRF-212ENST00000477970 SYNJ1O43426 1573 aa19.45■□□□□ 0.7
PTPRF-212ENST00000477970 SOGA1O94964 1423 aa19.4■□□□□ 0.7
PTPRF-212ENST00000477970 BIVM-ERCC5R4GMW8 1640 aa19.38■□□□□ 0.69
PTPRF-212ENST00000477970 TOP2BQ02880 1626 aa19.38■□□□□ 0.69
PTPRF-212ENST00000477970 KIF21BO75037 1637 aa19.35■□□□□ 0.69
PTPRF-212ENST00000477970 TNIKQ9UKE5 1360 aa19.35■□□□□ 0.69
PTPRF-212ENST00000477970 GOLGA3Q08378 1498 aa19.31■□□□□ 0.68
PTPRF-212ENST00000477970 URB2Q14146 1524 aaKnown RBP19.3■□□□□ 0.68
PTPRF-212ENST00000477970 CSRNP3Q8WYN3 585 aa19.3■□□□□ 0.68
PTPRF-212ENST00000477970 RUSC2Q8N2Y8 1516 aa19.29■□□□□ 0.68
PTPRF-212ENST00000477970 DNMBPQ6XZF7 1577 aa19.25■□□□□ 0.67
PTPRF-212ENST00000477970 CEP162Q5TB80 1403 aa19.25■□□□□ 0.67
PTPRF-212ENST00000477970 TOPBP1Q92547 1522 aa19.2■□□□□ 0.66
PTPRF-212ENST00000477970 CUX1P39880 1505 aa19.13■□□□□ 0.65
PTPRF-212ENST00000477970 EHMT2Q96KQ7 1210 aa19.13■□□□□ 0.65
PTPRF-212ENST00000477970 ERICH3Q5RHP9 1530 aa19.12■□□□□ 0.65
PTPRF-212ENST00000477970 IFT140Q96RY7 1462 aa19.1■□□□□ 0.65
PTPRF-212ENST00000477970 WDR97A6NE52 1622 aa19.09■□□□□ 0.65
PTPRF-212ENST00000477970 TARBP1Q13395 1621 aaKnown RBP19.08■□□□□ 0.65
PTPRF-212ENST00000477970 ZEB1P37275 1124 aaPredicted RBP19.08■□□□□ 0.65
PTPRF-212ENST00000477970 PRXQ9BXM0 1461 aa19.03■□□□□ 0.64
PTPRF-212ENST00000477970 POLA1P09884 1462 aaPredicted RBP19.01■□□□□ 0.63
PTPRF-212ENST00000477970 RAPGEF2Q9Y4G8 1499 aa19.01■□□□□ 0.63
PTPRF-212ENST00000477970 UBTFP17480 764 aaKnown RBP19■□□□□ 0.63
PTPRF-212ENST00000477970 EIF4G3O43432 1585 aaKnown RBP18.96■□□□□ 0.63
PTPRF-212ENST00000477970 KIF27Q86VH2 1401 aa18.96■□□□□ 0.63
PTPRF-212ENST00000477970 CLIP1P30622 1438 aa18.96■□□□□ 0.63
PTPRF-212ENST00000477970 FGD5Q6ZNL6 1462 aa18.95■□□□□ 0.62
PTPRF-212ENST00000477970 VPS8Q8N3P4 1428 aa18.93■□□□□ 0.62
PTPRF-212ENST00000477970 ZNF608Q9ULD9 1512 aaPredicted RBP18.89■□□□□ 0.61
PTPRF-212ENST00000477970 PPARGC1BQ86YN6 1023 aaKnown RBP18.87■□□□□ 0.61
PTPRF-212ENST00000477970 ABCA10Q8WWZ4 1543 aa18.85■□□□□ 0.61
PTPRF-212ENST00000477970 ABCA5Q8WWZ7 1642 aa18.85■□□□□ 0.61
PTPRF-212ENST00000477970 RAD54L2Q9Y4B4 1467 aa18.84■□□□□ 0.61
PTPRF-212ENST00000477970 PBRM1Q86U86 1689 aa18.83■□□□□ 0.61
PTPRF-212ENST00000477970 DNAJC5Q9H3Z4 198 aa18.8■□□□□ 0.6
PTPRF-212ENST00000477970 ARAP1Q96P48 1450 aa18.77■□□□□ 0.59
PTPRF-212ENST00000477970 CHD1O14646 1710 aa18.76■□□□□ 0.59
PTPRF-212ENST00000477970 AQRO60306 1485 aaKnown RBP eCLIP18.74■□□□□ 0.598e-7■■■■■ 37.5
PTPRF-212ENST00000477970 MAGI1Q96QZ7 1491 aaPredicted RBP18.73■□□□□ 0.59
PTPRF-212ENST00000477970 GRIN2BQ13224 1484 aa18.73■□□□□ 0.59
PTPRF-212ENST00000477970 IGF1RP08069 1367 aa18.72■□□□□ 0.59
PTPRF-212ENST00000477970 GAPVD1Q14C86 1478 aa18.69■□□□□ 0.58
PTPRF-212ENST00000477970 TDRD9Q8NDG6 1382 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms