RNA–Protein interactions for RNA: ENST00000477360.2

CLCNKA-205, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 5

Gene CLCNKA, Length 400 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-205ENST00000477360 NISCHQ9Y2I1 1504 aa30.1■■■□□ 2.41
CLCNKA-205ENST00000477360 CCDC180Q9P1Z9 1646 aa26.79■■□□□ 1.88
CLCNKA-205ENST00000477360 ABCC9O60706 1549 aa26.06■■□□□ 1.76
CLCNKA-205ENST00000477360 NACADO15069 1562 aa25.23■■□□□ 1.63
CLCNKA-205ENST00000477360 RB1CC1Q8TDY2 1594 aa25.21■■□□□ 1.63
CLCNKA-205ENST00000477360 MYO15BQ96JP2 1530 aa25.21■■□□□ 1.63
CLCNKA-205ENST00000477360 ZCCHC6Q5VYS8 1495 aaKnown RBP25.07■■□□□ 1.6
CLCNKA-205ENST00000477360 DCAF1Q9Y4B6 1507 aa25.04■■□□□ 1.6
CLCNKA-205ENST00000477360 DCAF8L2P0C7V8 631 aa24.94■■□□□ 1.58
CLCNKA-205ENST00000477360 UNC13AQ9UPW8 1703 aa24.47■■□□□ 1.51
CLCNKA-205ENST00000477360 BICRAQ9NZM4 1560 aa24.39■■□□□ 1.5
CLCNKA-205ENST00000477360 SHROOM4Q9ULL8 1493 aa24.38■■□□□ 1.49
CLCNKA-205ENST00000477360 PABPN1Q86U42 306 aaKnown RBP eCLIP24.32■■□□□ 1.48
CLCNKA-205ENST00000477360 SCRIBQ14160 1630 aa24.26■■□□□ 1.47
CLCNKA-205ENST00000477360 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
CLCNKA-205ENST00000477360 EIF4G1Q04637 1599 aaKnown RBP23.77■■□□□ 1.4
CLCNKA-205ENST00000477360 CC2D2AQ9P2K1 1620 aa23.62■■□□□ 1.37
CLCNKA-205ENST00000477360 CECR2Q9BXF3 1484 aa23.51■■□□□ 1.35
CLCNKA-205ENST00000477360 BAZ1AQ9NRL2 1556 aaPredicted RBP23.35■■□□□ 1.33
CLCNKA-205ENST00000477360 SMARCA4P51532 1647 aa23.31■■□□□ 1.32
CLCNKA-205ENST00000477360 NCAPD3P42695 1498 aa23.3■■□□□ 1.32
CLCNKA-205ENST00000477360 SMARCA2P51531 1590 aa23.25■■□□□ 1.31
CLCNKA-205ENST00000477360 ATAD2BQ9ULI0 1458 aa23.23■■□□□ 1.31
CLCNKA-205ENST00000477360 PEG3Q9GZU2 1588 aa23.2■■□□□ 1.3
CLCNKA-205ENST00000477360 HMGXB3Q12766 1538 aa23.16■■□□□ 1.3
CLCNKA-205ENST00000477360 MROH2BQ7Z745 1585 aa23.11■■□□□ 1.29
CLCNKA-205ENST00000477360 BAZ1BQ9UIG0 1483 aaKnown RBP23.02■■□□□ 1.28
CLCNKA-205ENST00000477360 RSF1Q96T23 1441 aaPredicted RBP22.91■■□□□ 1.26
CLCNKA-205ENST00000477360 WIZO95785 1651 aa22.8■■□□□ 1.24
CLCNKA-205ENST00000477360 TOP2AP11388 1531 aaKnown RBP22.68■■□□□ 1.22
CLCNKA-205ENST00000477360 LAMC3Q9Y6N6 1575 aa22.64■■□□□ 1.22
CLCNKA-205ENST00000477360 CADPSQ9ULU8 1353 aa22.58■■□□□ 1.21
CLCNKA-205ENST00000477360 NESP48681 1621 aa22.53■■□□□ 1.2
CLCNKA-205ENST00000477360 ERCC6Q03468 1493 aa22.53■■□□□ 1.2
CLCNKA-205ENST00000477360 PDS5BQ9NTI5 1447 aa22.52■■□□□ 1.2
CLCNKA-205ENST00000477360 CFTRP13569 1480 aa22.45■■□□□ 1.18
CLCNKA-205ENST00000477360 CUX2O14529 1486 aa22.42■■□□□ 1.18
CLCNKA-205ENST00000477360 CCDC88BA6NC98 1476 aa22.38■■□□□ 1.17
CLCNKA-205ENST00000477360 THOC2Q8NI27 1593 aaKnown RBP22.28■■□□□ 1.16
CLCNKA-205ENST00000477360 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
CLCNKA-205ENST00000477360 KIF21AQ7Z4S6 1674 aa22.26■■□□□ 1.15
CLCNKA-205ENST00000477360 CEP164Q9UPV0 1460 aa22.25■■□□□ 1.15
CLCNKA-205ENST00000477360 MRC2Q9UBG0 1479 aa22.23■■□□□ 1.15
CLCNKA-205ENST00000477360 PRDM2Q13029 1718 aa22.17■■□□□ 1.14
CLCNKA-205ENST00000477360 WDR62O43379 1518 aa22.17■■□□□ 1.14
CLCNKA-205ENST00000477360 SUPT5HO00267 1087 aaKnown RBP22.14■■□□□ 1.13
CLCNKA-205ENST00000477360 ABCC8Q09428 1581 aa22.04■■□□□ 1.12
CLCNKA-205ENST00000477360 URB2Q14146 1524 aaKnown RBP22.01■■□□□ 1.11
CLCNKA-205ENST00000477360 DNMBPQ6XZF7 1577 aa21.9■■□□□ 1.1
CLCNKA-205ENST00000477360 TOPBP1Q92547 1522 aa21.9■■□□□ 1.1
CLCNKA-205ENST00000477360 IFT140Q96RY7 1462 aa21.83■■□□□ 1.08
CLCNKA-205ENST00000477360 POLA1P09884 1462 aaPredicted RBP21.71■■□□□ 1.07
CLCNKA-205ENST00000477360 DNAJC5Q9H3Z4 198 aa21.71■■□□□ 1.07
CLCNKA-205ENST00000477360 CUX1P39880 1505 aa21.7■■□□□ 1.06
CLCNKA-205ENST00000477360 TARBP1Q13395 1621 aaKnown RBP21.66■■□□□ 1.06
CLCNKA-205ENST00000477360 WDR97A6NE52 1622 aa21.64■■□□□ 1.05
CLCNKA-205ENST00000477360 SOGA1O94964 1423 aa21.63■■□□□ 1.05
CLCNKA-205ENST00000477360 FGD5Q6ZNL6 1462 aa21.63■■□□□ 1.05
CLCNKA-205ENST00000477360 ZNF608Q9ULD9 1512 aaPredicted RBP21.6■■□□□ 1.05
CLCNKA-205ENST00000477360 WRNQ14191 1432 aaPredicted RBP eCLIP21.6■■□□□ 1.05
CLCNKA-205ENST00000477360 TOP2BQ02880 1626 aa21.55■■□□□ 1.04
CLCNKA-205ENST00000477360 RAD54L2Q9Y4B4 1467 aa21.54■■□□□ 1.04
CLCNKA-205ENST00000477360 BIVM-ERCC5R4GMW8 1640 aa21.54■■□□□ 1.04
CLCNKA-205ENST00000477360 EIF4G3O43432 1585 aaKnown RBP21.53■■□□□ 1.04
CLCNKA-205ENST00000477360 ABCA10Q8WWZ4 1543 aa21.5■■□□□ 1.03
CLCNKA-205ENST00000477360 AQRO60306 1485 aaKnown RBP eCLIP21.48■■□□□ 1.03
CLCNKA-205ENST00000477360 TDRD9Q8NDG6 1382 aaKnown RBP21.46■■□□□ 1.03
CLCNKA-205ENST00000477360 SYNJ1O43426 1573 aa21.45■■□□□ 1.02
CLCNKA-205ENST00000477360 OSCARQ8IYS5 282 aa21.44■■□□□ 1.02
CLCNKA-205ENST00000477360 GRIN2BQ13224 1484 aa21.42■■□□□ 1.02
CLCNKA-205ENST00000477360 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.02
CLCNKA-205ENST00000477360 GAPVD1Q14C86 1478 aa21.39■■□□□ 1.01
CLCNKA-205ENST00000477360 ABCA5Q8WWZ7 1642 aa21.37■■□□□ 1.01
CLCNKA-205ENST00000477360 SNAPC4Q5SXM2 1469 aa21.31■■□□□ 1
CLCNKA-205ENST00000477360 SYNJ2O15056 1496 aa21.29■■□□□ 1
CLCNKA-205ENST00000477360 ERICH3Q5RHP9 1530 aa21.26■□□□□ 0.99
CLCNKA-205ENST00000477360 PBRM1Q86U86 1689 aa21.24■□□□□ 0.99
CLCNKA-205ENST00000477360 CHMP7Q8WUX9 453 aaPredicted RBP21.23■□□□□ 0.99
CLCNKA-205ENST00000477360 CHD1O14646 1710 aa21.2■□□□□ 0.98
CLCNKA-205ENST00000477360 KIF27Q86VH2 1401 aa21.19■□□□□ 0.98
CLCNKA-205ENST00000477360 FBLN2P98095 1184 aa21.18■□□□□ 0.98
CLCNKA-205ENST00000477360 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
CLCNKA-205ENST00000477360 ADAMTS12P58397 1594 aa21.14■□□□□ 0.98
CLCNKA-205ENST00000477360 GRIN2AQ12879 1464 aa21.12■□□□□ 0.97
CLCNKA-205ENST00000477360 CLASP1Q7Z460 1538 aa21.09■□□□□ 0.97
CLCNKA-205ENST00000477360 IGF1RP08069 1367 aa21.08■□□□□ 0.96
CLCNKA-205ENST00000477360 NUP160Q12769 1436 aa21.06■□□□□ 0.96
CLCNKA-205ENST00000477360 ARHGEF11O15085 1522 aa21.04■□□□□ 0.96
CLCNKA-205ENST00000477360 TRIM41Q8WV44 630 aa21.03■□□□□ 0.96
CLCNKA-205ENST00000477360 CUL7Q14999 1698 aa21.02■□□□□ 0.96
CLCNKA-205ENST00000477360 RIMBP3CA6NJZ7 1639 aa20.99■□□□□ 0.95
CLCNKA-205ENST00000477360 RIMBP3BA6NNM3 1639 aa20.99■□□□□ 0.95
CLCNKA-205ENST00000477360 RIMBP3Q9UFD9 1639 aa20.99■□□□□ 0.95
CLCNKA-205ENST00000477360 CEP170Q5SW79 1584 aa20.94■□□□□ 0.94
CLCNKA-205ENST00000477360 CARMIL1Q5VZK9 1371 aa20.94■□□□□ 0.94
CLCNKA-205ENST00000477360 SHROOM2Q13796 1616 aa20.88■□□□□ 0.93
CLCNKA-205ENST00000477360 KIAA0586Q9BVV6 1533 aa20.87■□□□□ 0.93
CLCNKA-205ENST00000477360 ARAP1Q96P48 1450 aa20.85■□□□□ 0.93
CLCNKA-205ENST00000477360 EEA1Q15075 1411 aa20.84■□□□□ 0.93
CLCNKA-205ENST00000477360 RUSC2Q8N2Y8 1516 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms