RNA–Protein interactions for RNA: ENST00000477169.5

SMARCD3-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 5

Gene SMARCD3, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-210ENST00000477169 NISCHQ9Y2I1 1504 aa42.36■■■■■ 4.37
SMARCD3-210ENST00000477169 CCDC180Q9P1Z9 1646 aa37.87■■■■□ 3.65
SMARCD3-210ENST00000477169 ABCC9O60706 1549 aa37.58■■■■□ 3.61
SMARCD3-210ENST00000477169 RB1CC1Q8TDY2 1594 aa35.93■■■■□ 3.34
SMARCD3-210ENST00000477169 NACADO15069 1562 aa35.76■■■■□ 3.32
SMARCD3-210ENST00000477169 DCAF8L2P0C7V8 631 aa35.66■■■■□ 3.3
SMARCD3-210ENST00000477169 MYO15BQ96JP2 1530 aa35.4■■■■□ 3.26
SMARCD3-210ENST00000477169 ZCCHC6Q5VYS8 1495 aaKnown RBP35.16■■■■□ 3.22
SMARCD3-210ENST00000477169 UNC13AQ9UPW8 1703 aa35.07■■■■□ 3.2
SMARCD3-210ENST00000477169 PABPN1Q86U42 306 aaKnown RBP eCLIP35.06■■■■□ 3.2
SMARCD3-210ENST00000477169 DNAJC5BQ9UF47 199 aa35.04■■■■□ 3.2
SMARCD3-210ENST00000477169 DCAF1Q9Y4B6 1507 aa35.04■■■■□ 3.2
SMARCD3-210ENST00000477169 BICRAQ9NZM4 1560 aa34.84■■■■□ 3.17
SMARCD3-210ENST00000477169 SCRIBQ14160 1630 aa34.49■■■■□ 3.11
SMARCD3-210ENST00000477169 SHROOM4Q9ULL8 1493 aa34.46■■■■□ 3.11
SMARCD3-210ENST00000477169 EIF4G1Q04637 1599 aaKnown RBP33.98■■■■□ 3.03
SMARCD3-210ENST00000477169 CC2D2AQ9P2K1 1620 aa33.97■■■■□ 3.03
SMARCD3-210ENST00000477169 CECR2Q9BXF3 1484 aa33.84■■■■□ 3.01
SMARCD3-210ENST00000477169 NCAPD3P42695 1498 aa33.03■■■□□ 2.88
SMARCD3-210ENST00000477169 SMARCA4P51532 1647 aa32.96■■■□□ 2.87
SMARCD3-210ENST00000477169 ATAD2BQ9ULI0 1458 aa32.95■■■□□ 2.87
SMARCD3-210ENST00000477169 SMARCA2P51531 1590 aa32.87■■■□□ 2.85
SMARCD3-210ENST00000477169 BAZ1AQ9NRL2 1556 aaPredicted RBP32.87■■■□□ 2.85
SMARCD3-210ENST00000477169 HMGXB3Q12766 1538 aa32.78■■■□□ 2.84
SMARCD3-210ENST00000477169 PEG3Q9GZU2 1588 aa32.67■■■□□ 2.82
SMARCD3-210ENST00000477169 BAZ1BQ9UIG0 1483 aaKnown RBP32.63■■■□□ 2.81
SMARCD3-210ENST00000477169 MROH2BQ7Z745 1585 aa32.62■■■□□ 2.81
SMARCD3-210ENST00000477169 ERCC6Q03468 1493 aa32.44■■■□□ 2.78
SMARCD3-210ENST00000477169 NESP48681 1621 aa32.36■■■□□ 2.77
SMARCD3-210ENST00000477169 CUX2O14529 1486 aa32.3■■■□□ 2.76
SMARCD3-210ENST00000477169 WIZO95785 1651 aa32.24■■■□□ 2.75
SMARCD3-210ENST00000477169 LAMC3Q9Y6N6 1575 aa32.22■■■□□ 2.75
SMARCD3-210ENST00000477169 RSF1Q96T23 1441 aaPredicted RBP32.09■■■□□ 2.73
SMARCD3-210ENST00000477169 DNAJC5Q9H3Z4 198 aa32.08■■■□□ 2.73
SMARCD3-210ENST00000477169 PDS5BQ9NTI5 1447 aa32.05■■■□□ 2.72
SMARCD3-210ENST00000477169 CADPSQ9ULU8 1353 aa32.05■■■□□ 2.72
SMARCD3-210ENST00000477169 THOC2Q8NI27 1593 aaKnown RBP31.96■■■□□ 2.71
SMARCD3-210ENST00000477169 KIF21AQ7Z4S6 1674 aa31.94■■■□□ 2.7
SMARCD3-210ENST00000477169 TOP2AP11388 1531 aaKnown RBP31.86■■■□□ 2.69
SMARCD3-210ENST00000477169 CFTRP13569 1480 aa31.72■■■□□ 2.67
SMARCD3-210ENST00000477169 MRC2Q9UBG0 1479 aa31.72■■■□□ 2.67
SMARCD3-210ENST00000477169 FANCD2Q9BXW9 1451 aa31.65■■■□□ 2.66
SMARCD3-210ENST00000477169 CEP164Q9UPV0 1460 aa31.65■■■□□ 2.66
SMARCD3-210ENST00000477169 WDR62O43379 1518 aa31.62■■■□□ 2.65
SMARCD3-210ENST00000477169 CCDC88BA6NC98 1476 aa31.52■■■□□ 2.64
SMARCD3-210ENST00000477169 PRDM2Q13029 1718 aa31.38■■■□□ 2.61
SMARCD3-210ENST00000477169 URB2Q14146 1524 aaKnown RBP31.35■■■□□ 2.61
SMARCD3-210ENST00000477169 ABCC8Q09428 1581 aa31.09■■■□□ 2.57
SMARCD3-210ENST00000477169 TOPBP1Q92547 1522 aa31.08■■■□□ 2.57
SMARCD3-210ENST00000477169 IFT140Q96RY7 1462 aa31.02■■■□□ 2.56
SMARCD3-210ENST00000477169 DNMBPQ6XZF7 1577 aa30.98■■■□□ 2.55
SMARCD3-210ENST00000477169 OSCARQ8IYS5 282 aa30.93■■■□□ 2.54
SMARCD3-210ENST00000477169 ZNF608Q9ULD9 1512 aaPredicted RBP30.92■■■□□ 2.54
SMARCD3-210ENST00000477169 SUPT5HO00267 1087 aaKnown RBP30.88■■■□□ 2.53
SMARCD3-210ENST00000477169 POLA1P09884 1462 aaPredicted RBP30.77■■■□□ 2.52
SMARCD3-210ENST00000477169 TARBP1Q13395 1621 aaKnown RBP30.76■■■□□ 2.52
SMARCD3-210ENST00000477169 EIF4G3O43432 1585 aaKnown RBP30.74■■■□□ 2.51
SMARCD3-210ENST00000477169 AQRO60306 1485 aaKnown RBP eCLIP30.7■■■□□ 2.5
SMARCD3-210ENST00000477169 TRIM41Q8WV44 630 aa30.69■■■□□ 2.5
SMARCD3-210ENST00000477169 SOGA1O94964 1423 aa30.67■■■□□ 2.5
SMARCD3-210ENST00000477169 RAD54L2Q9Y4B4 1467 aa30.65■■■□□ 2.5
SMARCD3-210ENST00000477169 CUX1P39880 1505 aa30.63■■■□□ 2.49
SMARCD3-210ENST00000477169 FGD5Q6ZNL6 1462 aa30.62■■■□□ 2.49
SMARCD3-210ENST00000477169 TDRD9Q8NDG6 1382 aaKnown RBP30.56■■■□□ 2.48
SMARCD3-210ENST00000477169 WDR97A6NE52 1622 aa30.51■■■□□ 2.48
SMARCD3-210ENST00000477169 CHD1O14646 1710 aa30.45■■■□□ 2.47
SMARCD3-210ENST00000477169 FBLN2P98095 1184 aa30.45■■■□□ 2.47
SMARCD3-210ENST00000477169 RIMBP3CA6NJZ7 1639 aa30.41■■■□□ 2.46
SMARCD3-210ENST00000477169 RIMBP3BA6NNM3 1639 aa30.41■■■□□ 2.46
SMARCD3-210ENST00000477169 RIMBP3Q9UFD9 1639 aa30.41■■■□□ 2.46
SMARCD3-210ENST00000477169 GRIN2BQ13224 1484 aa30.37■■■□□ 2.45
SMARCD3-210ENST00000477169 SNAPC4Q5SXM2 1469 aa30.37■■■□□ 2.45
SMARCD3-210ENST00000477169 ARHGEF11O15085 1522 aa30.36■■■□□ 2.45
SMARCD3-210ENST00000477169 MAGI1Q96QZ7 1491 aaPredicted RBP30.33■■■□□ 2.45
SMARCD3-210ENST00000477169 CHMP7Q8WUX9 453 aaPredicted RBP30.31■■■□□ 2.44
SMARCD3-210ENST00000477169 ABCA10Q8WWZ4 1543 aa30.31■■■□□ 2.44
SMARCD3-210ENST00000477169 GAPVD1Q14C86 1478 aa30.29■■■□□ 2.44
SMARCD3-210ENST00000477169 WRNQ14191 1432 aaPredicted RBP eCLIP30.26■■■□□ 2.43
SMARCD3-210ENST00000477169 TOP2BQ02880 1626 aa30.24■■■□□ 2.43
SMARCD3-210ENST00000477169 SYNJ2O15056 1496 aa30.23■■■□□ 2.43
SMARCD3-210ENST00000477169 BIVM-ERCC5R4GMW8 1640 aa30.22■■■□□ 2.43
SMARCD3-210ENST00000477169 PBRM1Q86U86 1689 aa30.21■■■□□ 2.43
SMARCD3-210ENST00000477169 ABCA5Q8WWZ7 1642 aa30.2■■■□□ 2.43
SMARCD3-210ENST00000477169 SYNJ1O43426 1573 aa30.18■■■□□ 2.42
SMARCD3-210ENST00000477169 CYB5RLQ6IPT4 315 aa30.16■■■□□ 2.42
SMARCD3-210ENST00000477169 CLASP1Q7Z460 1538 aa30.13■■■□□ 2.41
SMARCD3-210ENST00000477169 ARAP1Q96P48 1450 aa30.06■■■□□ 2.4
SMARCD3-210ENST00000477169 GRIN2AQ12879 1464 aa29.95■■■□□ 2.39
SMARCD3-210ENST00000477169 ADAMTS12P58397 1594 aa29.94■■■□□ 2.38
SMARCD3-210ENST00000477169 ERICH3Q5RHP9 1530 aa29.94■■■□□ 2.38
SMARCD3-210ENST00000477169 FHAD1B1AJZ9 1412 aa29.93■■■□□ 2.38
SMARCD3-210ENST00000477169 NUP160Q12769 1436 aa29.86■■■□□ 2.37
SMARCD3-210ENST00000477169 CEP170Q5SW79 1584 aa29.81■■■□□ 2.36
SMARCD3-210ENST00000477169 TRHP20396 242 aaPredicted RBP29.73■■■□□ 2.35
SMARCD3-210ENST00000477169 KIF27Q86VH2 1401 aa29.68■■■□□ 2.34
SMARCD3-210ENST00000477169 SHROOM2Q13796 1616 aa29.67■■■□□ 2.34
SMARCD3-210ENST00000477169 ERCC6L2Q5T890 1561 aa29.66■■■□□ 2.34
SMARCD3-210ENST00000477169 IGF1RP08069 1367 aa29.65■■■□□ 2.34
SMARCD3-210ENST00000477169 JPH4Q96JJ6 628 aa29.6■■■□□ 2.33
SMARCD3-210ENST00000477169 PRG4Q92954 1404 aaPredicted RBP29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms