RNA–Protein interactions for RNA: ENST00000477119.1

APTX-221, Transcript of aprataxin, humanhuman

TSL 3

Gene APTX, Length 568 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-221ENST00000477119 NISCHQ9Y2I1 1504 aa33.21■■■□□ 2.91
APTX-221ENST00000477119 ABCC9O60706 1549 aa29.63■■■□□ 2.33
APTX-221ENST00000477119 CCDC180Q9P1Z9 1646 aa29.63■■■□□ 2.33
APTX-221ENST00000477119 RB1CC1Q8TDY2 1594 aa28.2■■■□□ 2.1
APTX-221ENST00000477119 DCAF8L2P0C7V8 631 aa28.14■■■□□ 2.1
APTX-221ENST00000477119 NACADO15069 1562 aa28.05■■■□□ 2.08
APTX-221ENST00000477119 DNAJC5BQ9UF47 199 aa27.71■■■□□ 2.03
APTX-221ENST00000477119 MYO15BQ96JP2 1530 aa27.68■■■□□ 2.02
APTX-221ENST00000477119 PABPN1Q86U42 306 aaKnown RBP eCLIP27.68■■■□□ 2.02
APTX-221ENST00000477119 ZCCHC6Q5VYS8 1495 aaKnown RBP27.52■■■□□ 2
APTX-221ENST00000477119 UNC13AQ9UPW8 1703 aa27.44■■□□□ 1.98
APTX-221ENST00000477119 DCAF1Q9Y4B6 1507 aa27.4■■□□□ 1.98
APTX-221ENST00000477119 BICRAQ9NZM4 1560 aa27.36■■□□□ 1.97
APTX-221ENST00000477119 SCRIBQ14160 1630 aa27.08■■□□□ 1.93
APTX-221ENST00000477119 SHROOM4Q9ULL8 1493 aa26.98■■□□□ 1.91
APTX-221ENST00000477119 CC2D2AQ9P2K1 1620 aa26.71■■□□□ 1.87
APTX-221ENST00000477119 EIF4G1Q04637 1599 aaKnown RBP26.69■■□□□ 1.86
APTX-221ENST00000477119 CECR2Q9BXF3 1484 aa26.66■■□□□ 1.86
APTX-221ENST00000477119 NCAPD3P42695 1498 aa25.93■■□□□ 1.74
APTX-221ENST00000477119 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
APTX-221ENST00000477119 SMARCA4P51532 1647 aa25.83■■□□□ 1.73
APTX-221ENST00000477119 SMARCA2P51531 1590 aa25.78■■□□□ 1.72
APTX-221ENST00000477119 BAZ1AQ9NRL2 1556 aaPredicted RBP25.75■■□□□ 1.71
APTX-221ENST00000477119 HMGXB3Q12766 1538 aa25.68■■□□□ 1.7
APTX-221ENST00000477119 BAZ1BQ9UIG0 1483 aaKnown RBP25.63■■□□□ 1.69
APTX-221ENST00000477119 MROH2BQ7Z745 1585 aa25.61■■□□□ 1.69
APTX-221ENST00000477119 ERCC6Q03468 1493 aa25.57■■□□□ 1.68
APTX-221ENST00000477119 PEG3Q9GZU2 1588 aa25.56■■□□□ 1.68
APTX-221ENST00000477119 NESP48681 1621 aa25.48■■□□□ 1.67
APTX-221ENST00000477119 CUX2O14529 1486 aa25.41■■□□□ 1.66
APTX-221ENST00000477119 DNAJC5Q9H3Z4 198 aa25.32■■□□□ 1.64
APTX-221ENST00000477119 LAMC3Q9Y6N6 1575 aa25.27■■□□□ 1.64
APTX-221ENST00000477119 WIZO95785 1651 aa25.26■■□□□ 1.63
APTX-221ENST00000477119 PDS5BQ9NTI5 1447 aa25.19■■□□□ 1.62
APTX-221ENST00000477119 CADPSQ9ULU8 1353 aa25.18■■□□□ 1.62
APTX-221ENST00000477119 RSF1Q96T23 1441 aaPredicted RBP25.15■■□□□ 1.62
APTX-221ENST00000477119 THOC2Q8NI27 1593 aaKnown RBP25.1■■□□□ 1.61
APTX-221ENST00000477119 KIF21AQ7Z4S6 1674 aa25.05■■□□□ 1.6
APTX-221ENST00000477119 TOP2AP11388 1531 aaKnown RBP24.96■■□□□ 1.59
APTX-221ENST00000477119 MRC2Q9UBG0 1479 aa24.93■■□□□ 1.58
APTX-221ENST00000477119 CFTRP13569 1480 aa24.89■■□□□ 1.57
APTX-221ENST00000477119 FANCD2Q9BXW9 1451 aa24.87■■□□□ 1.57
APTX-221ENST00000477119 CEP164Q9UPV0 1460 aa24.87■■□□□ 1.57
APTX-221ENST00000477119 WDR62O43379 1518 aa24.83■■□□□ 1.57
APTX-221ENST00000477119 CCDC88BA6NC98 1476 aa24.73■■□□□ 1.55
APTX-221ENST00000477119 URB2Q14146 1524 aaKnown RBP24.64■■□□□ 1.53
APTX-221ENST00000477119 PRDM2Q13029 1718 aa24.48■■□□□ 1.51
APTX-221ENST00000477119 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
APTX-221ENST00000477119 OSCARQ8IYS5 282 aa24.39■■□□□ 1.49
APTX-221ENST00000477119 IFT140Q96RY7 1462 aa24.37■■□□□ 1.49
APTX-221ENST00000477119 ABCC8Q09428 1581 aa24.37■■□□□ 1.49
APTX-221ENST00000477119 ZNF608Q9ULD9 1512 aaPredicted RBP24.33■■□□□ 1.49
APTX-221ENST00000477119 TRIM41Q8WV44 630 aa24.32■■□□□ 1.48
APTX-221ENST00000477119 DNMBPQ6XZF7 1577 aa24.29■■□□□ 1.48
APTX-221ENST00000477119 SUPT5HO00267 1087 aaKnown RBP24.27■■□□□ 1.48
APTX-221ENST00000477119 AQRO60306 1485 aaKnown RBP eCLIP24.16■■□□□ 1.46
APTX-221ENST00000477119 POLA1P09884 1462 aaPredicted RBP24.16■■□□□ 1.46
APTX-221ENST00000477119 TARBP1Q13395 1621 aaKnown RBP24.13■■□□□ 1.45
APTX-221ENST00000477119 EIF4G3O43432 1585 aaKnown RBP24.13■■□□□ 1.45
APTX-221ENST00000477119 SOGA1O94964 1423 aa24.11■■□□□ 1.45
APTX-221ENST00000477119 RAD54L2Q9Y4B4 1467 aa24.11■■□□□ 1.45
APTX-221ENST00000477119 TDRD9Q8NDG6 1382 aaKnown RBP24.06■■□□□ 1.44
APTX-221ENST00000477119 FBLN2P98095 1184 aa24.04■■□□□ 1.44
APTX-221ENST00000477119 FGD5Q6ZNL6 1462 aa24.04■■□□□ 1.44
APTX-221ENST00000477119 CUX1P39880 1505 aa24.03■■□□□ 1.44
APTX-221ENST00000477119 RIMBP3CA6NJZ7 1639 aa23.93■■□□□ 1.42
APTX-221ENST00000477119 RIMBP3BA6NNM3 1639 aa23.93■■□□□ 1.42
APTX-221ENST00000477119 RIMBP3Q9UFD9 1639 aa23.93■■□□□ 1.42
APTX-221ENST00000477119 ARHGEF11O15085 1522 aa23.9■■□□□ 1.42
APTX-221ENST00000477119 CHD1O14646 1710 aa23.89■■□□□ 1.41
APTX-221ENST00000477119 SNAPC4Q5SXM2 1469 aa23.87■■□□□ 1.41
APTX-221ENST00000477119 CHMP7Q8WUX9 453 aaPredicted RBP23.87■■□□□ 1.41
APTX-221ENST00000477119 WDR97A6NE52 1622 aa23.85■■□□□ 1.41
APTX-221ENST00000477119 GRIN2BQ13224 1484 aa23.85■■□□□ 1.41
APTX-221ENST00000477119 CYB5RLQ6IPT4 315 aa23.84■■□□□ 1.41
APTX-221ENST00000477119 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
APTX-221ENST00000477119 GAPVD1Q14C86 1478 aa23.79■■□□□ 1.4
APTX-221ENST00000477119 ABCA10Q8WWZ4 1543 aa23.76■■□□□ 1.39
APTX-221ENST00000477119 WRNQ14191 1432 aaPredicted RBP eCLIP23.75■■□□□ 1.39
APTX-221ENST00000477119 SYNJ2O15056 1496 aa23.74■■□□□ 1.39
APTX-221ENST00000477119 ARAP1Q96P48 1450 aa23.68■■□□□ 1.38
APTX-221ENST00000477119 SYNJ1O43426 1573 aa23.68■■□□□ 1.38
APTX-221ENST00000477119 CLASP1Q7Z460 1538 aa23.67■■□□□ 1.38
APTX-221ENST00000477119 ABCA5Q8WWZ7 1642 aa23.66■■□□□ 1.38
APTX-221ENST00000477119 TOP2BQ02880 1626 aa23.66■■□□□ 1.38
APTX-221ENST00000477119 PBRM1Q86U86 1689 aa23.65■■□□□ 1.38
APTX-221ENST00000477119 BIVM-ERCC5R4GMW8 1640 aa23.62■■□□□ 1.37
APTX-221ENST00000477119 TRHP20396 242 aaPredicted RBP23.53■■□□□ 1.36
APTX-221ENST00000477119 GRIN2AQ12879 1464 aa23.53■■□□□ 1.36
APTX-221ENST00000477119 FHAD1B1AJZ9 1412 aa23.5■■□□□ 1.35
APTX-221ENST00000477119 ADAMTS12P58397 1594 aa23.48■■□□□ 1.35
APTX-221ENST00000477119 ERICH3Q5RHP9 1530 aa23.45■■□□□ 1.34
APTX-221ENST00000477119 NUP160Q12769 1436 aa23.43■■□□□ 1.34
APTX-221ENST00000477119 CEP170Q5SW79 1584 aa23.41■■□□□ 1.34
APTX-221ENST00000477119 ERCC6L2Q5T890 1561 aa23.35■■□□□ 1.33
APTX-221ENST00000477119 JPH4Q96JJ6 628 aa23.29■■□□□ 1.32
APTX-221ENST00000477119 KIF27Q86VH2 1401 aa23.28■■□□□ 1.32
APTX-221ENST00000477119 IGF1RP08069 1367 aa23.27■■□□□ 1.32
APTX-221ENST00000477119 SHROOM2Q13796 1616 aa23.25■■□□□ 1.31
APTX-221ENST00000477119 PRG4Q92954 1404 aaPredicted RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms