RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 NISCHQ9Y2I1 1504 aa33.1■■■□□ 2.89
COL4A6-206ENST00000477085 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
COL4A6-206ENST00000477085 ZCCHC6Q5VYS8 1495 aaKnown RBP27.77■■■□□ 2.04
COL4A6-206ENST00000477085 ABCC9O60706 1549 aa27.45■■□□□ 1.98
COL4A6-206ENST00000477085 DCAF8L2P0C7V8 631 aa27.4■■□□□ 1.98
COL4A6-206ENST00000477085 DCAF1Q9Y4B6 1507 aa27.31■■□□□ 1.96
COL4A6-206ENST00000477085 MYO15BQ96JP2 1530 aa27.02■■□□□ 1.92
COL4A6-206ENST00000477085 SHROOM4Q9ULL8 1493 aa26.98■■□□□ 1.91
COL4A6-206ENST00000477085 NACADO15069 1562 aa26.88■■□□□ 1.89
COL4A6-206ENST00000477085 RB1CC1Q8TDY2 1594 aa26.66■■□□□ 1.86
COL4A6-206ENST00000477085 SCRIBQ14160 1630 aa26.56■■□□□ 1.84
COL4A6-206ENST00000477085 UNC13AQ9UPW8 1703 aa26.16■■□□□ 1.78
COL4A6-206ENST00000477085 BICRAQ9NZM4 1560 aa25.97■■□□□ 1.75
COL4A6-206ENST00000477085 PABPN1Q86U42 306 aaKnown RBP eCLIP25.92■■□□□ 1.74
COL4A6-206ENST00000477085 SUPT5HO00267 1087 aaKnown RBP25.9■■□□□ 1.74
COL4A6-206ENST00000477085 CECR2Q9BXF3 1484 aa25.79■■□□□ 1.72
COL4A6-206ENST00000477085 RSF1Q96T23 1441 aaPredicted RBP25.68■■□□□ 1.7
COL4A6-206ENST00000477085 MROH2BQ7Z745 1585 aa25.6■■□□□ 1.69
COL4A6-206ENST00000477085 BAZ1AQ9NRL2 1556 aaPredicted RBP25.5■■□□□ 1.67
COL4A6-206ENST00000477085 SMARCA4P51532 1647 aa25.43■■□□□ 1.66
COL4A6-206ENST00000477085 WIZO95785 1651 aa25.36■■□□□ 1.65
COL4A6-206ENST00000477085 EIF4G1Q04637 1599 aaKnown RBP25.15■■□□□ 1.62
COL4A6-206ENST00000477085 PEG3Q9GZU2 1588 aa25.13■■□□□ 1.61
COL4A6-206ENST00000477085 ATAD2BQ9ULI0 1458 aa25.08■■□□□ 1.61
COL4A6-206ENST00000477085 TOP2AP11388 1531 aaKnown RBP25.05■■□□□ 1.6
COL4A6-206ENST00000477085 SMARCA2P51531 1590 aa24.98■■□□□ 1.59
COL4A6-206ENST00000477085 BAZ1BQ9UIG0 1483 aaKnown RBP24.89■■□□□ 1.57
COL4A6-206ENST00000477085 NCAPD3P42695 1498 aa24.87■■□□□ 1.57
COL4A6-206ENST00000477085 CCDC88BA6NC98 1476 aa24.86■■□□□ 1.57
COL4A6-206ENST00000477085 CC2D2AQ9P2K1 1620 aa24.8■■□□□ 1.56
COL4A6-206ENST00000477085 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
COL4A6-206ENST00000477085 CHIC1Q5VXU3 224 aa24.76■■□□□ 1.55
COL4A6-206ENST00000477085 DNAJC5BQ9UF47 199 aa24.42■■□□□ 1.5
COL4A6-206ENST00000477085 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
COL4A6-206ENST00000477085 ABCC8Q09428 1581 aa24.3■■□□□ 1.48
COL4A6-206ENST00000477085 CFTRP13569 1480 aa24.3■■□□□ 1.48
COL4A6-206ENST00000477085 CADPSQ9ULU8 1353 aa24.23■■□□□ 1.47
COL4A6-206ENST00000477085 WRNQ14191 1432 aaPredicted RBP eCLIP24.11■■□□□ 1.45
COL4A6-206ENST00000477085 NESP48681 1621 aa24.1■■□□□ 1.45
COL4A6-206ENST00000477085 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
COL4A6-206ENST00000477085 PRDM2Q13029 1718 aa24.04■■□□□ 1.44
COL4A6-206ENST00000477085 LAMC3Q9Y6N6 1575 aa23.98■■□□□ 1.43
COL4A6-206ENST00000477085 FANCD2Q9BXW9 1451 aa23.95■■□□□ 1.42
COL4A6-206ENST00000477085 CUX1P39880 1505 aa23.93■■□□□ 1.42
COL4A6-206ENST00000477085 FAM9AQ8IZU1 332 aaPredicted RBP23.92■■□□□ 1.42
COL4A6-206ENST00000477085 TOP2BQ02880 1626 aa23.92■■□□□ 1.42
COL4A6-206ENST00000477085 BIVM-ERCC5R4GMW8 1640 aa23.88■■□□□ 1.41
COL4A6-206ENST00000477085 LOC105371045A0A1W2PR82 267 aa23.86■■□□□ 1.41
COL4A6-206ENST00000477085 SOGA1O94964 1423 aa23.86■■□□□ 1.41
COL4A6-206ENST00000477085 PDS5BQ9NTI5 1447 aa23.81■■□□□ 1.4
COL4A6-206ENST00000477085 RUSC2Q8N2Y8 1516 aa23.8■■□□□ 1.4
COL4A6-206ENST00000477085 CEP164Q9UPV0 1460 aa23.77■■□□□ 1.4
COL4A6-206ENST00000477085 KIF21AQ7Z4S6 1674 aa23.72■■□□□ 1.39
COL4A6-206ENST00000477085 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
COL4A6-206ENST00000477085 TOPBP1Q92547 1522 aa23.68■■□□□ 1.38
COL4A6-206ENST00000477085 DNMBPQ6XZF7 1577 aa23.68■■□□□ 1.38
COL4A6-206ENST00000477085 FGD5Q6ZNL6 1462 aa23.66■■□□□ 1.38
COL4A6-206ENST00000477085 EEA1Q15075 1411 aa23.65■■□□□ 1.38
COL4A6-206ENST00000477085 CSRNP3Q8WYN3 585 aa23.63■■□□□ 1.37
COL4A6-206ENST00000477085 EHMT2Q96KQ7 1210 aa23.62■■□□□ 1.37
COL4A6-206ENST00000477085 POLA1P09884 1462 aaPredicted RBP23.57■■□□□ 1.36
COL4A6-206ENST00000477085 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
COL4A6-206ENST00000477085 MRC2Q9UBG0 1479 aa23.53■■□□□ 1.36
COL4A6-206ENST00000477085 KIF27Q86VH2 1401 aa23.49■■□□□ 1.35
COL4A6-206ENST00000477085 CUX2O14529 1486 aa23.48■■□□□ 1.35
COL4A6-206ENST00000477085 ERCC6Q03468 1493 aa23.47■■□□□ 1.35
COL4A6-206ENST00000477085 ABCA10Q8WWZ4 1543 aa23.44■■□□□ 1.34
COL4A6-206ENST00000477085 WDR62O43379 1518 aa23.42■■□□□ 1.34
COL4A6-206ENST00000477085 IGF1RP08069 1367 aa23.38■■□□□ 1.33
COL4A6-206ENST00000477085 KIF21BO75037 1637 aa23.37■■□□□ 1.33
COL4A6-206ENST00000477085 THOC2Q8NI27 1593 aaKnown RBP23.37■■□□□ 1.33
COL4A6-206ENST00000477085 PRXQ9BXM0 1461 aa23.36■■□□□ 1.33
COL4A6-206ENST00000477085 GOLGA3Q08378 1498 aa23.35■■□□□ 1.33
COL4A6-206ENST00000477085 RAPGEF2Q9Y4G8 1499 aa23.35■■□□□ 1.33
COL4A6-206ENST00000477085 WDR97A6NE52 1622 aa23.34■■□□□ 1.33
COL4A6-206ENST00000477085 TARBP1Q13395 1621 aaKnown RBP23.34■■□□□ 1.33
COL4A6-206ENST00000477085 TDRD9Q8NDG6 1382 aaKnown RBP23.31■■□□□ 1.32
COL4A6-206ENST00000477085 TNIKQ9UKE5 1360 aa23.3■■□□□ 1.32
COL4A6-206ENST00000477085 UBTFP17480 764 aaKnown RBP23.29■■□□□ 1.32
COL4A6-206ENST00000477085 ABCA5Q8WWZ7 1642 aa23.24■■□□□ 1.31
COL4A6-206ENST00000477085 ERICH3Q5RHP9 1530 aa23.24■■□□□ 1.31
COL4A6-206ENST00000477085 CARMIL1Q5VZK9 1371 aa23.22■■□□□ 1.31
COL4A6-206ENST00000477085 IFT140Q96RY7 1462 aa23.22■■□□□ 1.31
COL4A6-206ENST00000477085 GAPVD1Q14C86 1478 aa23.21■■□□□ 1.31
COL4A6-206ENST00000477085 ZNF608Q9ULD9 1512 aaPredicted RBP23.18■■□□□ 1.3
COL4A6-206ENST00000477085 AQRO60306 1485 aaKnown RBP eCLIP23.18■■□□□ 1.3
COL4A6-206ENST00000477085 CEP162Q5TB80 1403 aa23.17■■□□□ 1.3
COL4A6-206ENST00000477085 CUL7Q14999 1698 aa23.07■■□□□ 1.28
COL4A6-206ENST00000477085 PBRM1Q86U86 1689 aa23.04■■□□□ 1.28
COL4A6-206ENST00000477085 GRIN2BQ13224 1484 aa23.03■■□□□ 1.28
COL4A6-206ENST00000477085 EIF4G3O43432 1585 aaKnown RBP23.02■■□□□ 1.27
COL4A6-206ENST00000477085 CLIP1P30622 1438 aa23■■□□□ 1.27
COL4A6-206ENST00000477085 RANGAP1P46060 587 aaPredicted RBP23■■□□□ 1.27
COL4A6-206ENST00000477085 FHAD1B1AJZ9 1412 aa22.95■■□□□ 1.26
COL4A6-206ENST00000477085 ADAMTS12P58397 1594 aa22.94■■□□□ 1.26
COL4A6-206ENST00000477085 SNAPC4Q5SXM2 1469 aa22.92■■□□□ 1.26
COL4A6-206ENST00000477085 ARHGAP35Q9NRY4 1499 aa22.84■■□□□ 1.25
COL4A6-206ENST00000477085 ARAP1Q96P48 1450 aa22.84■■□□□ 1.25
COL4A6-206ENST00000477085 MAGI1Q96QZ7 1491 aaPredicted RBP22.83■■□□□ 1.25
COL4A6-206ENST00000477085 CTTNBP2Q8WZ74 1663 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms