RNA–Protein interactions for RNA: ENST00000476792.1

LIMK1-204, Transcript of LIM domain kinase 1, humanhuman

TSL 2

Gene LIMK1, Length 785 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-204ENST00000476792 NISCHQ9Y2I1 1504 aa52.57■■■■■ 6.01
LIMK1-204ENST00000476792 CCDC180Q9P1Z9 1646 aa46.87■■■■■ 5.09
LIMK1-204ENST00000476792 ABCC9O60706 1549 aa46.56■■■■■ 5.04
LIMK1-204ENST00000476792 RB1CC1Q8TDY2 1594 aa44.43■■■■■ 4.7
LIMK1-204ENST00000476792 DCAF8L2P0C7V8 631 aa44.41■■■■■ 4.7
LIMK1-204ENST00000476792 NACADO15069 1562 aa44.24■■■■■ 4.67
LIMK1-204ENST00000476792 MYO15BQ96JP2 1530 aa43.72■■■■■ 4.59
LIMK1-204ENST00000476792 ZCCHC6Q5VYS8 1495 aaKnown RBP43.66■■■■■ 4.58
LIMK1-204ENST00000476792 PABPN1Q86U42 306 aaKnown RBP eCLIP43.5■■■■■ 4.55
LIMK1-204ENST00000476792 UNC13AQ9UPW8 1703 aa43.42■■■■■ 4.54
LIMK1-204ENST00000476792 DCAF1Q9Y4B6 1507 aa43.37■■■■■ 4.53
LIMK1-204ENST00000476792 DNAJC5BQ9UF47 199 aa43.23■■■■■ 4.51
LIMK1-204ENST00000476792 BICRAQ9NZM4 1560 aa43.12■■■■■ 4.49
LIMK1-204ENST00000476792 SCRIBQ14160 1630 aa42.89■■■■■ 4.46
LIMK1-204ENST00000476792 SHROOM4Q9ULL8 1493 aa42.49■■■■■ 4.39
LIMK1-204ENST00000476792 EIF4G1Q04637 1599 aaKnown RBP42.03■■■■■ 4.32
LIMK1-204ENST00000476792 CC2D2AQ9P2K1 1620 aa42.02■■■■■ 4.32
LIMK1-204ENST00000476792 CECR2Q9BXF3 1484 aa41.85■■■■■ 4.29
LIMK1-204ENST00000476792 SMARCA4P51532 1647 aa40.9■■■■■ 4.14
LIMK1-204ENST00000476792 NCAPD3P42695 1498 aa40.84■■■■■ 4.13
LIMK1-204ENST00000476792 ATAD2BQ9ULI0 1458 aa40.83■■■■■ 4.13
LIMK1-204ENST00000476792 BAZ1AQ9NRL2 1556 aaPredicted RBP40.77■■■■■ 4.12
LIMK1-204ENST00000476792 SMARCA2P51531 1590 aa40.72■■■■■ 4.11
LIMK1-204ENST00000476792 HMGXB3Q12766 1538 aa40.56■■■■■ 4.08
LIMK1-204ENST00000476792 MROH2BQ7Z745 1585 aa40.56■■■■■ 4.08
LIMK1-204ENST00000476792 BAZ1BQ9UIG0 1483 aaKnown RBP40.49■■■■■ 4.07
LIMK1-204ENST00000476792 PEG3Q9GZU2 1588 aa40.42■■■■■ 4.06
LIMK1-204ENST00000476792 ERCC6Q03468 1493 aa40.16■■■■■ 4.02
LIMK1-204ENST00000476792 NESP48681 1621 aa40.13■■■■■ 4.02
LIMK1-204ENST00000476792 WIZO95785 1651 aa40.1■■■■■ 4.01
LIMK1-204ENST00000476792 RSF1Q96T23 1441 aaPredicted RBP39.91■■■■□ 3.98
LIMK1-204ENST00000476792 LAMC3Q9Y6N6 1575 aa39.83■■■■□ 3.97
LIMK1-204ENST00000476792 CUX2O14529 1486 aa39.8■■■■□ 3.96
LIMK1-204ENST00000476792 CADPSQ9ULU8 1353 aa39.68■■■■□ 3.94
LIMK1-204ENST00000476792 PDS5BQ9NTI5 1447 aa39.64■■■■□ 3.94
LIMK1-204ENST00000476792 TOP2AP11388 1531 aaKnown RBP39.59■■■■□ 3.93
LIMK1-204ENST00000476792 KIF21AQ7Z4S6 1674 aa39.57■■■■□ 3.93
LIMK1-204ENST00000476792 THOC2Q8NI27 1593 aaKnown RBP39.52■■■■□ 3.92
LIMK1-204ENST00000476792 CFTRP13569 1480 aa39.3■■■■□ 3.88
LIMK1-204ENST00000476792 DNAJC5Q9H3Z4 198 aa39.27■■■■□ 3.88
LIMK1-204ENST00000476792 MRC2Q9UBG0 1479 aa39.26■■■■□ 3.88
LIMK1-204ENST00000476792 FANCD2Q9BXW9 1451 aa39.24■■■■□ 3.87
LIMK1-204ENST00000476792 CEP164Q9UPV0 1460 aa39.22■■■■□ 3.87
LIMK1-204ENST00000476792 CCDC88BA6NC98 1476 aa39.18■■■■□ 3.86
LIMK1-204ENST00000476792 WDR62O43379 1518 aa39.11■■■■□ 3.85
LIMK1-204ENST00000476792 PRDM2Q13029 1718 aa38.89■■■■□ 3.82
LIMK1-204ENST00000476792 URB2Q14146 1524 aaKnown RBP38.87■■■■□ 3.81
LIMK1-204ENST00000476792 SUPT5HO00267 1087 aaKnown RBP38.71■■■■□ 3.79
LIMK1-204ENST00000476792 TOPBP1Q92547 1522 aa38.54■■■■□ 3.76
LIMK1-204ENST00000476792 ABCC8Q09428 1581 aa38.44■■■■□ 3.74
LIMK1-204ENST00000476792 DNMBPQ6XZF7 1577 aa38.42■■■■□ 3.74
LIMK1-204ENST00000476792 IFT140Q96RY7 1462 aa38.41■■■■□ 3.74
LIMK1-204ENST00000476792 ZNF608Q9ULD9 1512 aaPredicted RBP38.33■■■■□ 3.73
LIMK1-204ENST00000476792 OSCARQ8IYS5 282 aa38.18■■■■□ 3.7
LIMK1-204ENST00000476792 POLA1P09884 1462 aaPredicted RBP38.17■■■■□ 3.7
LIMK1-204ENST00000476792 TARBP1Q13395 1621 aaKnown RBP38.12■■■■□ 3.69
LIMK1-204ENST00000476792 EIF4G3O43432 1585 aaKnown RBP38.1■■■■□ 3.69
LIMK1-204ENST00000476792 RAD54L2Q9Y4B4 1467 aa38.09■■■■□ 3.69
LIMK1-204ENST00000476792 AQRO60306 1485 aaKnown RBP eCLIP38.08■■■■□ 3.69
LIMK1-204ENST00000476792 CUX1P39880 1505 aa38.07■■■■□ 3.68
LIMK1-204ENST00000476792 SOGA1O94964 1423 aa38.05■■■■□ 3.68
LIMK1-204ENST00000476792 FGD5Q6ZNL6 1462 aa38.03■■■■□ 3.68
LIMK1-204ENST00000476792 TDRD9Q8NDG6 1382 aaKnown RBP37.95■■■■□ 3.67
LIMK1-204ENST00000476792 TRIM41Q8WV44 630 aa37.91■■■■□ 3.66
LIMK1-204ENST00000476792 FBLN2P98095 1184 aa37.83■■■■□ 3.65
LIMK1-204ENST00000476792 CHD1O14646 1710 aa37.74■■■■□ 3.63
LIMK1-204ENST00000476792 WDR97A6NE52 1622 aa37.69■■■■□ 3.62
LIMK1-204ENST00000476792 SNAPC4Q5SXM2 1469 aa37.68■■■■□ 3.62
LIMK1-204ENST00000476792 WRNQ14191 1432 aaPredicted RBP eCLIP37.65■■■■□ 3.62
LIMK1-204ENST00000476792 GRIN2BQ13224 1484 aa37.63■■■■□ 3.61
LIMK1-204ENST00000476792 GAPVD1Q14C86 1478 aa37.58■■■■□ 3.61
LIMK1-204ENST00000476792 ABCA10Q8WWZ4 1543 aa37.58■■■■□ 3.61
LIMK1-204ENST00000476792 SYNJ1O43426 1573 aa37.57■■■■□ 3.6
LIMK1-204ENST00000476792 CHMP7Q8WUX9 453 aaPredicted RBP37.57■■■■□ 3.6
LIMK1-204ENST00000476792 RIMBP3CA6NJZ7 1639 aa37.57■■■■□ 3.6
LIMK1-204ENST00000476792 RIMBP3BA6NNM3 1639 aa37.57■■■■□ 3.6
LIMK1-204ENST00000476792 RIMBP3Q9UFD9 1639 aa37.57■■■■□ 3.6
LIMK1-204ENST00000476792 TOP2BQ02880 1626 aa37.55■■■■□ 3.6
LIMK1-204ENST00000476792 MAGI1Q96QZ7 1491 aaPredicted RBP37.54■■■■□ 3.6
LIMK1-204ENST00000476792 BIVM-ERCC5R4GMW8 1640 aa37.54■■■■□ 3.6
LIMK1-204ENST00000476792 ARHGEF11O15085 1522 aa37.51■■■■□ 3.59
LIMK1-204ENST00000476792 PBRM1Q86U86 1689 aa37.49■■■■□ 3.59
LIMK1-204ENST00000476792 ABCA5Q8WWZ7 1642 aa37.46■■■■□ 3.59
LIMK1-204ENST00000476792 SYNJ2O15056 1496 aa37.43■■■■□ 3.58
LIMK1-204ENST00000476792 CYB5RLQ6IPT4 315 aa37.32■■■■□ 3.56
LIMK1-204ENST00000476792 CLASP1Q7Z460 1538 aa37.27■■■■□ 3.56
LIMK1-204ENST00000476792 ARAP1Q96P48 1450 aa37.18■■■■□ 3.54
LIMK1-204ENST00000476792 ADAMTS12P58397 1594 aa37.17■■■■□ 3.54
LIMK1-204ENST00000476792 GRIN2AQ12879 1464 aa37.14■■■■□ 3.54
LIMK1-204ENST00000476792 FHAD1B1AJZ9 1412 aa37.11■■■■□ 3.53
LIMK1-204ENST00000476792 ERICH3Q5RHP9 1530 aa37.1■■■■□ 3.53
LIMK1-204ENST00000476792 CEP170Q5SW79 1584 aa36.98■■■■□ 3.51
LIMK1-204ENST00000476792 NUP160Q12769 1436 aa36.97■■■■□ 3.51
LIMK1-204ENST00000476792 KIF27Q86VH2 1401 aa36.9■■■■□ 3.5
LIMK1-204ENST00000476792 IGF1RP08069 1367 aa36.82■■■■□ 3.49
LIMK1-204ENST00000476792 ERCC6L2Q5T890 1561 aa36.81■■■■□ 3.48
LIMK1-204ENST00000476792 TRHP20396 242 aaPredicted RBP36.77■■■■□ 3.48
LIMK1-204ENST00000476792 SHROOM2Q13796 1616 aa36.71■■■■□ 3.47
LIMK1-204ENST00000476792 JPH4Q96JJ6 628 aa36.68■■■■□ 3.46
LIMK1-204ENST00000476792 CUL7Q14999 1698 aa36.66■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms