RNA–Protein interactions for RNA: ENST00000476743.5

MSL3-213, Transcript of MSL complex subunit 3, humanhuman

TSL 4

Gene MSL3, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-213ENST00000476743 NISCHQ9Y2I1 1504 aa33.83■■■■□ 3.01
MSL3-213ENST00000476743 CCDC180Q9P1Z9 1646 aa30.2■■■□□ 2.43
MSL3-213ENST00000476743 ABCC9O60706 1549 aa29.57■■■□□ 2.32
MSL3-213ENST00000476743 RB1CC1Q8TDY2 1594 aa28.45■■■□□ 2.14
MSL3-213ENST00000476743 NACADO15069 1562 aa28.4■■■□□ 2.14
MSL3-213ENST00000476743 MYO15BQ96JP2 1530 aa28.24■■■□□ 2.11
MSL3-213ENST00000476743 ZCCHC6Q5VYS8 1495 aaKnown RBP28.16■■■□□ 2.1
MSL3-213ENST00000476743 DCAF8L2P0C7V8 631 aa28.13■■■□□ 2.09
MSL3-213ENST00000476743 DCAF1Q9Y4B6 1507 aa28.04■■■□□ 2.08
MSL3-213ENST00000476743 UNC13AQ9UPW8 1703 aa27.84■■■□□ 2.05
MSL3-213ENST00000476743 BICRAQ9NZM4 1560 aa27.63■■■□□ 2.01
MSL3-213ENST00000476743 PABPN1Q86U42 306 aaKnown RBP eCLIP27.57■■■□□ 2
MSL3-213ENST00000476743 SCRIBQ14160 1630 aa27.45■■□□□ 1.98
MSL3-213ENST00000476743 SHROOM4Q9ULL8 1493 aa27.37■■□□□ 1.97
MSL3-213ENST00000476743 DNAJC5BQ9UF47 199 aa27.3■■□□□ 1.96
MSL3-213ENST00000476743 EIF4G1Q04637 1599 aaKnown RBP26.88■■□□□ 1.89
MSL3-213ENST00000476743 CC2D2AQ9P2K1 1620 aa26.8■■□□□ 1.88
MSL3-213ENST00000476743 CECR2Q9BXF3 1484 aa26.62■■□□□ 1.85
MSL3-213ENST00000476743 SMARCA4P51532 1647 aa26.28■■□□□ 1.8
MSL3-213ENST00000476743 BAZ1AQ9NRL2 1556 aaPredicted RBP26.23■■□□□ 1.79
MSL3-213ENST00000476743 NCAPD3P42695 1498 aa26.2■■□□□ 1.78
MSL3-213ENST00000476743 ATAD2BQ9ULI0 1458 aa26.17■■□□□ 1.78
MSL3-213ENST00000476743 SMARCA2P51531 1590 aa26.14■■□□□ 1.78
MSL3-213ENST00000476743 PEG3Q9GZU2 1588 aa26.08■■□□□ 1.77
MSL3-213ENST00000476743 HMGXB3Q12766 1538 aa26.08■■□□□ 1.77
MSL3-213ENST00000476743 MROH2BQ7Z745 1585 aa26.05■■□□□ 1.76
MSL3-213ENST00000476743 BAZ1BQ9UIG0 1483 aaKnown RBP25.91■■□□□ 1.74
MSL3-213ENST00000476743 WIZO95785 1651 aa25.76■■□□□ 1.71
MSL3-213ENST00000476743 RSF1Q96T23 1441 aaPredicted RBP25.69■■□□□ 1.7
MSL3-213ENST00000476743 NESP48681 1621 aa25.56■■□□□ 1.68
MSL3-213ENST00000476743 LAMC3Q9Y6N6 1575 aa25.54■■□□□ 1.68
MSL3-213ENST00000476743 TOP2AP11388 1531 aaKnown RBP25.5■■□□□ 1.67
MSL3-213ENST00000476743 ERCC6Q03468 1493 aa25.49■■□□□ 1.67
MSL3-213ENST00000476743 CADPSQ9ULU8 1353 aa25.4■■□□□ 1.66
MSL3-213ENST00000476743 CUX2O14529 1486 aa25.36■■□□□ 1.65
MSL3-213ENST00000476743 PDS5BQ9NTI5 1447 aa25.33■■□□□ 1.65
MSL3-213ENST00000476743 KIF21AQ7Z4S6 1674 aa25.29■■□□□ 1.64
MSL3-213ENST00000476743 THOC2Q8NI27 1593 aaKnown RBP25.28■■□□□ 1.64
MSL3-213ENST00000476743 CFTRP13569 1480 aa25.24■■□□□ 1.63
MSL3-213ENST00000476743 CCDC88BA6NC98 1476 aa25.17■■□□□ 1.62
MSL3-213ENST00000476743 FANCD2Q9BXW9 1451 aa25.09■■□□□ 1.61
MSL3-213ENST00000476743 MRC2Q9UBG0 1479 aa25.09■■□□□ 1.61
MSL3-213ENST00000476743 PRDM2Q13029 1718 aa25.08■■□□□ 1.61
MSL3-213ENST00000476743 CEP164Q9UPV0 1460 aa25.08■■□□□ 1.6
MSL3-213ENST00000476743 WDR62O43379 1518 aa25.05■■□□□ 1.6
MSL3-213ENST00000476743 URB2Q14146 1524 aaKnown RBP24.87■■□□□ 1.57
MSL3-213ENST00000476743 SUPT5HO00267 1087 aaKnown RBP24.78■■□□□ 1.56
MSL3-213ENST00000476743 DNAJC5Q9H3Z4 198 aa24.72■■□□□ 1.55
MSL3-213ENST00000476743 ABCC8Q09428 1581 aa24.7■■□□□ 1.54
MSL3-213ENST00000476743 TOPBP1Q92547 1522 aa24.7■■□□□ 1.54
MSL3-213ENST00000476743 DNMBPQ6XZF7 1577 aa24.67■■□□□ 1.54
MSL3-213ENST00000476743 IFT140Q96RY7 1462 aa24.58■■□□□ 1.53
MSL3-213ENST00000476743 TARBP1Q13395 1621 aaKnown RBP24.47■■□□□ 1.51
MSL3-213ENST00000476743 POLA1P09884 1462 aaPredicted RBP24.47■■□□□ 1.51
MSL3-213ENST00000476743 ZNF608Q9ULD9 1512 aaPredicted RBP24.46■■□□□ 1.51
MSL3-213ENST00000476743 CUX1P39880 1505 aa24.45■■□□□ 1.51
MSL3-213ENST00000476743 EIF4G3O43432 1585 aaKnown RBP24.39■■□□□ 1.5
MSL3-213ENST00000476743 FGD5Q6ZNL6 1462 aa24.38■■□□□ 1.49
MSL3-213ENST00000476743 SOGA1O94964 1423 aa24.34■■□□□ 1.49
MSL3-213ENST00000476743 RAD54L2Q9Y4B4 1467 aa24.33■■□□□ 1.49
MSL3-213ENST00000476743 WDR97A6NE52 1622 aa24.31■■□□□ 1.48
MSL3-213ENST00000476743 AQRO60306 1485 aaKnown RBP eCLIP24.28■■□□□ 1.48
MSL3-213ENST00000476743 BIVM-ERCC5R4GMW8 1640 aa24.24■■□□□ 1.47
MSL3-213ENST00000476743 TOP2BQ02880 1626 aa24.22■■□□□ 1.47
MSL3-213ENST00000476743 WRNQ14191 1432 aaPredicted RBP eCLIP24.21■■□□□ 1.47
MSL3-213ENST00000476743 OSCARQ8IYS5 282 aa24.21■■□□□ 1.47
MSL3-213ENST00000476743 TDRD9Q8NDG6 1382 aaKnown RBP24.19■■□□□ 1.46
MSL3-213ENST00000476743 SYNJ1O43426 1573 aa24.19■■□□□ 1.46
MSL3-213ENST00000476743 ABCA10Q8WWZ4 1543 aa24.17■■□□□ 1.46
MSL3-213ENST00000476743 CHD1O14646 1710 aa24.11■■□□□ 1.45
MSL3-213ENST00000476743 ABCA5Q8WWZ7 1642 aa24.1■■□□□ 1.45
MSL3-213ENST00000476743 GRIN2BQ13224 1484 aa24.1■■□□□ 1.45
MSL3-213ENST00000476743 SNAPC4Q5SXM2 1469 aa24.07■■□□□ 1.44
MSL3-213ENST00000476743 MAGI1Q96QZ7 1491 aaPredicted RBP24.07■■□□□ 1.44
MSL3-213ENST00000476743 GAPVD1Q14C86 1478 aa24.07■■□□□ 1.44
MSL3-213ENST00000476743 PBRM1Q86U86 1689 aa24.06■■□□□ 1.44
MSL3-213ENST00000476743 SYNJ2O15056 1496 aa23.96■■□□□ 1.43
MSL3-213ENST00000476743 FBLN2P98095 1184 aa23.93■■□□□ 1.42
MSL3-213ENST00000476743 RIMBP3CA6NJZ7 1639 aa23.9■■□□□ 1.42
MSL3-213ENST00000476743 RIMBP3BA6NNM3 1639 aa23.9■■□□□ 1.42
MSL3-213ENST00000476743 RIMBP3Q9UFD9 1639 aa23.9■■□□□ 1.42
MSL3-213ENST00000476743 CHMP7Q8WUX9 453 aaPredicted RBP23.89■■□□□ 1.41
MSL3-213ENST00000476743 ERICH3Q5RHP9 1530 aa23.88■■□□□ 1.41
MSL3-213ENST00000476743 CLASP1Q7Z460 1538 aa23.88■■□□□ 1.41
MSL3-213ENST00000476743 ARHGEF11O15085 1522 aa23.87■■□□□ 1.41
MSL3-213ENST00000476743 ADAMTS12P58397 1594 aa23.86■■□□□ 1.41
MSL3-213ENST00000476743 FHAD1B1AJZ9 1412 aa23.8■■□□□ 1.4
MSL3-213ENST00000476743 GRIN2AQ12879 1464 aa23.79■■□□□ 1.4
MSL3-213ENST00000476743 TRIM41Q8WV44 630 aa23.73■■□□□ 1.39
MSL3-213ENST00000476743 NUP160Q12769 1436 aa23.72■■□□□ 1.39
MSL3-213ENST00000476743 KIF27Q86VH2 1401 aa23.71■■□□□ 1.39
MSL3-213ENST00000476743 CEP170Q5SW79 1584 aa23.69■■□□□ 1.38
MSL3-213ENST00000476743 ARAP1Q96P48 1450 aa23.67■■□□□ 1.38
MSL3-213ENST00000476743 IGF1RP08069 1367 aa23.65■■□□□ 1.38
MSL3-213ENST00000476743 CUL7Q14999 1698 aa23.64■■□□□ 1.37
MSL3-213ENST00000476743 SHROOM2Q13796 1616 aa23.59■■□□□ 1.37
MSL3-213ENST00000476743 CYB5RLQ6IPT4 315 aa23.56■■□□□ 1.36
MSL3-213ENST00000476743 RUSC2Q8N2Y8 1516 aa23.53■■□□□ 1.36
MSL3-213ENST00000476743 ERCC6L2Q5T890 1561 aa23.49■■□□□ 1.35
MSL3-213ENST00000476743 CARMIL1Q5VZK9 1371 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms