RNA–Protein interactions for RNA: ENST00000476640.1

HMGCS2-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 2, humanhuman

TSL 3

Gene HMGCS2, Length 857 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2-203ENST00000476640 NISCHQ9Y2I1 1504 aa33.36■■■□□ 2.93
HMGCS2-203ENST00000476640 CCDC180Q9P1Z9 1646 aa30.04■■■□□ 2.4
HMGCS2-203ENST00000476640 ABCC9O60706 1549 aa29.81■■■□□ 2.36
HMGCS2-203ENST00000476640 RB1CC1Q8TDY2 1594 aa28.52■■■□□ 2.16
HMGCS2-203ENST00000476640 NACADO15069 1562 aa28.33■■■□□ 2.12
HMGCS2-203ENST00000476640 DCAF8L2P0C7V8 631 aa28.09■■■□□ 2.09
HMGCS2-203ENST00000476640 MYO15BQ96JP2 1530 aa27.96■■■□□ 2.07
HMGCS2-203ENST00000476640 UNC13AQ9UPW8 1703 aa27.89■■■□□ 2.06
HMGCS2-203ENST00000476640 DNAJC5BQ9UF47 199 aa27.78■■■□□ 2.04
HMGCS2-203ENST00000476640 PABPN1Q86U42 306 aaKnown RBP eCLIP27.7■■■□□ 2.02
HMGCS2-203ENST00000476640 ZCCHC6Q5VYS8 1495 aaKnown RBP27.66■■■□□ 2.02
HMGCS2-203ENST00000476640 DCAF1Q9Y4B6 1507 aa27.62■■■□□ 2.01
HMGCS2-203ENST00000476640 BICRAQ9NZM4 1560 aa27.59■■■□□ 2.01
HMGCS2-203ENST00000476640 SHROOM4Q9ULL8 1493 aa27.35■■□□□ 1.97
HMGCS2-203ENST00000476640 SCRIBQ14160 1630 aa27.27■■□□□ 1.96
HMGCS2-203ENST00000476640 CC2D2AQ9P2K1 1620 aa26.99■■□□□ 1.91
HMGCS2-203ENST00000476640 EIF4G1Q04637 1599 aaKnown RBP26.94■■□□□ 1.9
HMGCS2-203ENST00000476640 CECR2Q9BXF3 1484 aa26.87■■□□□ 1.89
HMGCS2-203ENST00000476640 NCAPD3P42695 1498 aa26.08■■□□□ 1.77
HMGCS2-203ENST00000476640 SMARCA4P51532 1647 aa26.05■■□□□ 1.76
HMGCS2-203ENST00000476640 SMARCA2P51531 1590 aa26.02■■□□□ 1.76
HMGCS2-203ENST00000476640 ATAD2BQ9ULI0 1458 aa25.99■■□□□ 1.75
HMGCS2-203ENST00000476640 HMGXB3Q12766 1538 aa25.95■■□□□ 1.74
HMGCS2-203ENST00000476640 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.74
HMGCS2-203ENST00000476640 ERCC6Q03468 1493 aa25.8■■□□□ 1.72
HMGCS2-203ENST00000476640 PEG3Q9GZU2 1588 aa25.8■■□□□ 1.72
HMGCS2-203ENST00000476640 BAZ1BQ9UIG0 1483 aaKnown RBP25.79■■□□□ 1.72
HMGCS2-203ENST00000476640 CUX2O14529 1486 aa25.74■■□□□ 1.71
HMGCS2-203ENST00000476640 MROH2BQ7Z745 1585 aa25.67■■□□□ 1.7
HMGCS2-203ENST00000476640 NESP48681 1621 aa25.6■■□□□ 1.69
HMGCS2-203ENST00000476640 DNAJC5Q9H3Z4 198 aa25.56■■□□□ 1.68
HMGCS2-203ENST00000476640 LAMC3Q9Y6N6 1575 aa25.56■■□□□ 1.68
HMGCS2-203ENST00000476640 WIZO95785 1651 aa25.41■■□□□ 1.66
HMGCS2-203ENST00000476640 THOC2Q8NI27 1593 aaKnown RBP25.4■■□□□ 1.66
HMGCS2-203ENST00000476640 KIF21AQ7Z4S6 1674 aa25.39■■□□□ 1.66
HMGCS2-203ENST00000476640 PDS5BQ9NTI5 1447 aa25.38■■□□□ 1.65
HMGCS2-203ENST00000476640 CADPSQ9ULU8 1353 aa25.29■■□□□ 1.64
HMGCS2-203ENST00000476640 RSF1Q96T23 1441 aaPredicted RBP25.15■■□□□ 1.62
HMGCS2-203ENST00000476640 MRC2Q9UBG0 1479 aa25.14■■□□□ 1.61
HMGCS2-203ENST00000476640 TOP2AP11388 1531 aaKnown RBP25.12■■□□□ 1.61
HMGCS2-203ENST00000476640 WDR62O43379 1518 aa25.07■■□□□ 1.6
HMGCS2-203ENST00000476640 CEP164Q9UPV0 1460 aa25.07■■□□□ 1.6
HMGCS2-203ENST00000476640 CFTRP13569 1480 aa25.02■■□□□ 1.6
HMGCS2-203ENST00000476640 FANCD2Q9BXW9 1451 aa25.02■■□□□ 1.6
HMGCS2-203ENST00000476640 PRDM2Q13029 1718 aa24.96■■□□□ 1.59
HMGCS2-203ENST00000476640 CCDC88BA6NC98 1476 aa24.77■■□□□ 1.56
HMGCS2-203ENST00000476640 URB2Q14146 1524 aaKnown RBP24.77■■□□□ 1.56
HMGCS2-203ENST00000476640 ABCC8Q09428 1581 aa24.59■■□□□ 1.53
HMGCS2-203ENST00000476640 IFT140Q96RY7 1462 aa24.56■■□□□ 1.52
HMGCS2-203ENST00000476640 TOPBP1Q92547 1522 aa24.55■■□□□ 1.52
HMGCS2-203ENST00000476640 OSCARQ8IYS5 282 aa24.54■■□□□ 1.52
HMGCS2-203ENST00000476640 DNMBPQ6XZF7 1577 aa24.5■■□□□ 1.51
HMGCS2-203ENST00000476640 TRIM41Q8WV44 630 aa24.46■■□□□ 1.51
HMGCS2-203ENST00000476640 ZNF608Q9ULD9 1512 aaPredicted RBP24.43■■□□□ 1.5
HMGCS2-203ENST00000476640 EIF4G3O43432 1585 aaKnown RBP24.39■■□□□ 1.5
HMGCS2-203ENST00000476640 TARBP1Q13395 1621 aaKnown RBP24.35■■□□□ 1.49
HMGCS2-203ENST00000476640 POLA1P09884 1462 aaPredicted RBP24.29■■□□□ 1.48
HMGCS2-203ENST00000476640 CHD1O14646 1710 aa24.24■■□□□ 1.47
HMGCS2-203ENST00000476640 RIMBP3CA6NJZ7 1639 aa24.24■■□□□ 1.47
HMGCS2-203ENST00000476640 RIMBP3BA6NNM3 1639 aa24.24■■□□□ 1.47
HMGCS2-203ENST00000476640 RIMBP3Q9UFD9 1639 aa24.24■■□□□ 1.47
HMGCS2-203ENST00000476640 AQRO60306 1485 aaKnown RBP eCLIP24.23■■□□□ 1.47
HMGCS2-203ENST00000476640 WDR97A6NE52 1622 aa24.2■■□□□ 1.46
HMGCS2-203ENST00000476640 SOGA1O94964 1423 aa24.18■■□□□ 1.46
HMGCS2-203ENST00000476640 FGD5Q6ZNL6 1462 aa24.15■■□□□ 1.46
HMGCS2-203ENST00000476640 RAD54L2Q9Y4B4 1467 aa24.15■■□□□ 1.46
HMGCS2-203ENST00000476640 ARHGEF11O15085 1522 aa24.15■■□□□ 1.46
HMGCS2-203ENST00000476640 CUX1P39880 1505 aa24.13■■□□□ 1.45
HMGCS2-203ENST00000476640 FBLN2P98095 1184 aa24.09■■□□□ 1.45
HMGCS2-203ENST00000476640 TDRD9Q8NDG6 1382 aaKnown RBP24.08■■□□□ 1.45
HMGCS2-203ENST00000476640 SUPT5HO00267 1087 aaKnown RBP24.08■■□□□ 1.45
HMGCS2-203ENST00000476640 SNAPC4Q5SXM2 1469 aa24.01■■□□□ 1.43
HMGCS2-203ENST00000476640 MAGI1Q96QZ7 1491 aaPredicted RBP24.01■■□□□ 1.43
HMGCS2-203ENST00000476640 GRIN2BQ13224 1484 aa24■■□□□ 1.43
HMGCS2-203ENST00000476640 PBRM1Q86U86 1689 aa23.98■■□□□ 1.43
HMGCS2-203ENST00000476640 SYNJ1O43426 1573 aa23.95■■□□□ 1.43
HMGCS2-203ENST00000476640 CHMP7Q8WUX9 453 aaPredicted RBP23.94■■□□□ 1.42
HMGCS2-203ENST00000476640 CYB5RLQ6IPT4 315 aa23.92■■□□□ 1.42
HMGCS2-203ENST00000476640 SYNJ2O15056 1496 aa23.91■■□□□ 1.42
HMGCS2-203ENST00000476640 GAPVD1Q14C86 1478 aa23.91■■□□□ 1.42
HMGCS2-203ENST00000476640 ABCA10Q8WWZ4 1543 aa23.9■■□□□ 1.42
HMGCS2-203ENST00000476640 CLASP1Q7Z460 1538 aa23.89■■□□□ 1.42
HMGCS2-203ENST00000476640 ABCA5Q8WWZ7 1642 aa23.88■■□□□ 1.41
HMGCS2-203ENST00000476640 ARAP1Q96P48 1450 aa23.87■■□□□ 1.41
HMGCS2-203ENST00000476640 BIVM-ERCC5R4GMW8 1640 aa23.84■■□□□ 1.41
HMGCS2-203ENST00000476640 WRNQ14191 1432 aaPredicted RBP eCLIP23.84■■□□□ 1.41
HMGCS2-203ENST00000476640 TOP2BQ02880 1626 aa23.83■■□□□ 1.41
HMGCS2-203ENST00000476640 ADAMTS12P58397 1594 aa23.69■■□□□ 1.38
HMGCS2-203ENST00000476640 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
HMGCS2-203ENST00000476640 TRHP20396 242 aaPredicted RBP23.66■■□□□ 1.38
HMGCS2-203ENST00000476640 ERICH3Q5RHP9 1530 aa23.64■■□□□ 1.38
HMGCS2-203ENST00000476640 FHAD1B1AJZ9 1412 aa23.61■■□□□ 1.37
HMGCS2-203ENST00000476640 NUP160Q12769 1436 aa23.58■■□□□ 1.36
HMGCS2-203ENST00000476640 CEP170Q5SW79 1584 aa23.57■■□□□ 1.36
HMGCS2-203ENST00000476640 SHROOM2Q13796 1616 aa23.52■■□□□ 1.36
HMGCS2-203ENST00000476640 ERCC6L2Q5T890 1561 aa23.46■■□□□ 1.35
HMGCS2-203ENST00000476640 CUL7Q14999 1698 aa23.37■■□□□ 1.33
HMGCS2-203ENST00000476640 RUSC2Q8N2Y8 1516 aa23.36■■□□□ 1.33
HMGCS2-203ENST00000476640 PRG4Q92954 1404 aaPredicted RBP23.35■■□□□ 1.33
HMGCS2-203ENST00000476640 KIF27Q86VH2 1401 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms