RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 NISCHQ9Y2I1 1504 aa29.62■■■□□ 2.33
SYNE1-223ENST00000476519 CCDC180Q9P1Z9 1646 aa26.35■■□□□ 1.81
SYNE1-223ENST00000476519 ABCC9O60706 1549 aa26.18■■□□□ 1.78
SYNE1-223ENST00000476519 RB1CC1Q8TDY2 1594 aa25.03■■□□□ 1.6
SYNE1-223ENST00000476519 DCAF8L2P0C7V8 631 aa25■■□□□ 1.59
SYNE1-223ENST00000476519 NACADO15069 1562 aa24.96■■□□□ 1.59
SYNE1-223ENST00000476519 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
SYNE1-223ENST00000476519 ZCCHC6Q5VYS8 1495 aaKnown RBP24.58■■□□□ 1.52
SYNE1-223ENST00000476519 DCAF1Q9Y4B6 1507 aa24.51■■□□□ 1.51
SYNE1-223ENST00000476519 PABPN1Q86U42 306 aaKnown RBP eCLIP24.51■■□□□ 1.51
SYNE1-223ENST00000476519 DNAJC5BQ9UF47 199 aa24.42■■□□□ 1.5
SYNE1-223ENST00000476519 UNC13AQ9UPW8 1703 aa24.25■■□□□ 1.47
SYNE1-223ENST00000476519 BICRAQ9NZM4 1560 aa24.25■■□□□ 1.47
SYNE1-223ENST00000476519 SHROOM4Q9ULL8 1493 aa24.06■■□□□ 1.44
SYNE1-223ENST00000476519 SCRIBQ14160 1630 aa24.01■■□□□ 1.43
SYNE1-223ENST00000476519 EIF4G1Q04637 1599 aaKnown RBP23.65■■□□□ 1.38
SYNE1-223ENST00000476519 CC2D2AQ9P2K1 1620 aa23.62■■□□□ 1.37
SYNE1-223ENST00000476519 CECR2Q9BXF3 1484 aa23.6■■□□□ 1.37
SYNE1-223ENST00000476519 NCAPD3P42695 1498 aa23.11■■□□□ 1.29
SYNE1-223ENST00000476519 ATAD2BQ9ULI0 1458 aa23.03■■□□□ 1.28
SYNE1-223ENST00000476519 SMARCA4P51532 1647 aa22.97■■□□□ 1.27
SYNE1-223ENST00000476519 BAZ1AQ9NRL2 1556 aaPredicted RBP22.96■■□□□ 1.27
SYNE1-223ENST00000476519 SMARCA2P51531 1590 aa22.95■■□□□ 1.26
SYNE1-223ENST00000476519 HMGXB3Q12766 1538 aa22.86■■□□□ 1.25
SYNE1-223ENST00000476519 PEG3Q9GZU2 1588 aa22.8■■□□□ 1.24
SYNE1-223ENST00000476519 BAZ1BQ9UIG0 1483 aaKnown RBP22.79■■□□□ 1.24
SYNE1-223ENST00000476519 MROH2BQ7Z745 1585 aa22.79■■□□□ 1.24
SYNE1-223ENST00000476519 ERCC6Q03468 1493 aa22.61■■□□□ 1.21
SYNE1-223ENST00000476519 NESP48681 1621 aa22.54■■□□□ 1.2
SYNE1-223ENST00000476519 CUX2O14529 1486 aa22.5■■□□□ 1.19
SYNE1-223ENST00000476519 RSF1Q96T23 1441 aaPredicted RBP22.49■■□□□ 1.19
SYNE1-223ENST00000476519 WIZO95785 1651 aa22.45■■□□□ 1.18
SYNE1-223ENST00000476519 CADPSQ9ULU8 1353 aa22.44■■□□□ 1.18
SYNE1-223ENST00000476519 LAMC3Q9Y6N6 1575 aa22.44■■□□□ 1.18
SYNE1-223ENST00000476519 PDS5BQ9NTI5 1447 aa22.41■■□□□ 1.18
SYNE1-223ENST00000476519 DNAJC5Q9H3Z4 198 aa22.3■■□□□ 1.16
SYNE1-223ENST00000476519 TOP2AP11388 1531 aaKnown RBP22.25■■□□□ 1.15
SYNE1-223ENST00000476519 CFTRP13569 1480 aa22.19■■□□□ 1.14
SYNE1-223ENST00000476519 THOC2Q8NI27 1593 aaKnown RBP22.18■■□□□ 1.14
SYNE1-223ENST00000476519 KIF21AQ7Z4S6 1674 aa22.13■■□□□ 1.13
SYNE1-223ENST00000476519 MRC2Q9UBG0 1479 aa22.12■■□□□ 1.13
SYNE1-223ENST00000476519 FANCD2Q9BXW9 1451 aa22.1■■□□□ 1.13
SYNE1-223ENST00000476519 CEP164Q9UPV0 1460 aa22.09■■□□□ 1.13
SYNE1-223ENST00000476519 CCDC88BA6NC98 1476 aa22.06■■□□□ 1.12
SYNE1-223ENST00000476519 WDR62O43379 1518 aa22.03■■□□□ 1.12
SYNE1-223ENST00000476519 URB2Q14146 1524 aaKnown RBP21.86■■□□□ 1.09
SYNE1-223ENST00000476519 ABCC8Q09428 1581 aa21.75■■□□□ 1.07
SYNE1-223ENST00000476519 PRDM2Q13029 1718 aa21.73■■□□□ 1.07
SYNE1-223ENST00000476519 SUPT5HO00267 1087 aaKnown RBP21.73■■□□□ 1.07
SYNE1-223ENST00000476519 TOPBP1Q92547 1522 aa21.69■■□□□ 1.06
SYNE1-223ENST00000476519 IFT140Q96RY7 1462 aa21.68■■□□□ 1.06
SYNE1-223ENST00000476519 OSCARQ8IYS5 282 aa21.64■■□□□ 1.05
SYNE1-223ENST00000476519 DNMBPQ6XZF7 1577 aa21.61■■□□□ 1.05
SYNE1-223ENST00000476519 ZNF608Q9ULD9 1512 aaPredicted RBP21.56■■□□□ 1.04
SYNE1-223ENST00000476519 POLA1P09884 1462 aaPredicted RBP21.49■■□□□ 1.03
SYNE1-223ENST00000476519 SOGA1O94964 1423 aa21.47■■□□□ 1.03
SYNE1-223ENST00000476519 AQRO60306 1485 aaKnown RBP eCLIP21.45■■□□□ 1.02
SYNE1-223ENST00000476519 TARBP1Q13395 1621 aaKnown RBP21.42■■□□□ 1.02
SYNE1-223ENST00000476519 RAD54L2Q9Y4B4 1467 aa21.41■■□□□ 1.02
SYNE1-223ENST00000476519 CUX1P39880 1505 aa21.39■■□□□ 1.01
SYNE1-223ENST00000476519 TDRD9Q8NDG6 1382 aaKnown RBP21.38■■□□□ 1.01
SYNE1-223ENST00000476519 FGD5Q6ZNL6 1462 aa21.38■■□□□ 1.01
SYNE1-223ENST00000476519 EIF4G3O43432 1585 aaKnown RBP21.36■■□□□ 1.01
SYNE1-223ENST00000476519 TRIM41Q8WV44 630 aa21.36■■□□□ 1.01
SYNE1-223ENST00000476519 FBLN2P98095 1184 aa21.31■■□□□ 1
SYNE1-223ENST00000476519 WDR97A6NE52 1622 aa21.26■□□□□ 0.99
SYNE1-223ENST00000476519 CHMP7Q8WUX9 453 aaPredicted RBP21.24■□□□□ 0.99
SYNE1-223ENST00000476519 GRIN2BQ13224 1484 aa21.22■□□□□ 0.99
SYNE1-223ENST00000476519 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
SYNE1-223ENST00000476519 ABCA10Q8WWZ4 1543 aa21.19■□□□□ 0.98
SYNE1-223ENST00000476519 SNAPC4Q5SXM2 1469 aa21.19■□□□□ 0.98
SYNE1-223ENST00000476519 MAGI1Q96QZ7 1491 aaPredicted RBP21.19■□□□□ 0.98
SYNE1-223ENST00000476519 GAPVD1Q14C86 1478 aa21.18■□□□□ 0.98
SYNE1-223ENST00000476519 ARHGEF11O15085 1522 aa21.12■□□□□ 0.97
SYNE1-223ENST00000476519 SYNJ2O15056 1496 aa21.11■□□□□ 0.97
SYNE1-223ENST00000476519 TOP2BQ02880 1626 aa21.11■□□□□ 0.97
SYNE1-223ENST00000476519 RIMBP3CA6NJZ7 1639 aa21.09■□□□□ 0.97
SYNE1-223ENST00000476519 RIMBP3BA6NNM3 1639 aa21.09■□□□□ 0.97
SYNE1-223ENST00000476519 RIMBP3Q9UFD9 1639 aa21.09■□□□□ 0.97
SYNE1-223ENST00000476519 CYB5RLQ6IPT4 315 aa21.09■□□□□ 0.97
SYNE1-223ENST00000476519 CHD1O14646 1710 aa21.09■□□□□ 0.97
SYNE1-223ENST00000476519 BIVM-ERCC5R4GMW8 1640 aa21.05■□□□□ 0.96
SYNE1-223ENST00000476519 SYNJ1O43426 1573 aa21.05■□□□□ 0.96
SYNE1-223ENST00000476519 ABCA5Q8WWZ7 1642 aa21.03■□□□□ 0.96
SYNE1-223ENST00000476519 CLASP1Q7Z460 1538 aa20.98■□□□□ 0.95
SYNE1-223ENST00000476519 PBRM1Q86U86 1689 aa20.95■□□□□ 0.94
SYNE1-223ENST00000476519 FHAD1B1AJZ9 1412 aa20.95■□□□□ 0.94
SYNE1-223ENST00000476519 ARAP1Q96P48 1450 aa20.93■□□□□ 0.94
SYNE1-223ENST00000476519 GRIN2AQ12879 1464 aa20.92■□□□□ 0.94
SYNE1-223ENST00000476519 ERICH3Q5RHP9 1530 aa20.92■□□□□ 0.94
SYNE1-223ENST00000476519 NUP160Q12769 1436 aa20.87■□□□□ 0.93
SYNE1-223ENST00000476519 ADAMTS12P58397 1594 aa20.85■□□□□ 0.93
SYNE1-223ENST00000476519 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
SYNE1-223ENST00000476519 IGF1RP08069 1367 aa20.82■□□□□ 0.92
SYNE1-223ENST00000476519 JPH4Q96JJ6 628 aa20.76■□□□□ 0.91
SYNE1-223ENST00000476519 CEP170Q5SW79 1584 aa20.76■□□□□ 0.91
SYNE1-223ENST00000476519 TRHP20396 242 aaPredicted RBP20.74■□□□□ 0.91
SYNE1-223ENST00000476519 CARMIL1Q5VZK9 1371 aa20.66■□□□□ 0.9
SYNE1-223ENST00000476519 PRG4Q92954 1404 aaPredicted RBP20.66■□□□□ 0.9
SYNE1-223ENST00000476519 SHROOM2Q13796 1616 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms