RNA–Protein interactions for RNA: ENST00000476267.1

MRPL55-228, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 3

Gene MRPL55, Length 169 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-228ENST00000476267 NISCHQ9Y2I1 1504 aa33.28■■■□□ 2.92
MRPL55-228ENST00000476267 CCDC180Q9P1Z9 1646 aa29.93■■■□□ 2.38
MRPL55-228ENST00000476267 ABCC9O60706 1549 aa29.8■■■□□ 2.36
MRPL55-228ENST00000476267 RB1CC1Q8TDY2 1594 aa28.42■■■□□ 2.14
MRPL55-228ENST00000476267 NACADO15069 1562 aa28.24■■■□□ 2.11
MRPL55-228ENST00000476267 DNAJC5BQ9UF47 199 aa27.97■■■□□ 2.07
MRPL55-228ENST00000476267 MYO15BQ96JP2 1530 aa27.91■■■□□ 2.06
MRPL55-228ENST00000476267 UNC13AQ9UPW8 1703 aa27.88■■■□□ 2.05
MRPL55-228ENST00000476267 DCAF8L2P0C7V8 631 aa27.82■■■□□ 2.04
MRPL55-228ENST00000476267 PABPN1Q86U42 306 aaKnown RBP eCLIP27.67■■■□□ 2.02
MRPL55-228ENST00000476267 BICRAQ9NZM4 1560 aa27.67■■■□□ 2.02
MRPL55-228ENST00000476267 ZCCHC6Q5VYS8 1495 aaKnown RBP27.61■■■□□ 2.01
MRPL55-228ENST00000476267 DCAF1Q9Y4B6 1507 aa27.54■■■□□ 2
MRPL55-228ENST00000476267 SHROOM4Q9ULL8 1493 aa27.28■■□□□ 1.96
MRPL55-228ENST00000476267 SCRIBQ14160 1630 aa27.18■■□□□ 1.94
MRPL55-228ENST00000476267 CC2D2AQ9P2K1 1620 aa26.99■■□□□ 1.91
MRPL55-228ENST00000476267 EIF4G1Q04637 1599 aaKnown RBP26.94■■□□□ 1.9
MRPL55-228ENST00000476267 CECR2Q9BXF3 1484 aa26.86■■□□□ 1.89
MRPL55-228ENST00000476267 NCAPD3P42695 1498 aa26.06■■□□□ 1.76
MRPL55-228ENST00000476267 SMARCA4P51532 1647 aa25.98■■□□□ 1.75
MRPL55-228ENST00000476267 ATAD2BQ9ULI0 1458 aa25.98■■□□□ 1.75
MRPL55-228ENST00000476267 HMGXB3Q12766 1538 aa25.91■■□□□ 1.74
MRPL55-228ENST00000476267 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
MRPL55-228ENST00000476267 BAZ1AQ9NRL2 1556 aaPredicted RBP25.82■■□□□ 1.72
MRPL55-228ENST00000476267 PEG3Q9GZU2 1588 aa25.78■■□□□ 1.72
MRPL55-228ENST00000476267 CUX2O14529 1486 aa25.73■■□□□ 1.71
MRPL55-228ENST00000476267 BAZ1BQ9UIG0 1483 aaKnown RBP25.69■■□□□ 1.7
MRPL55-228ENST00000476267 ERCC6Q03468 1493 aa25.68■■□□□ 1.7
MRPL55-228ENST00000476267 DNAJC5Q9H3Z4 198 aa25.66■■□□□ 1.7
MRPL55-228ENST00000476267 MROH2BQ7Z745 1585 aa25.64■■□□□ 1.69
MRPL55-228ENST00000476267 NESP48681 1621 aa25.63■■□□□ 1.69
MRPL55-228ENST00000476267 LAMC3Q9Y6N6 1575 aa25.49■■□□□ 1.67
MRPL55-228ENST00000476267 THOC2Q8NI27 1593 aaKnown RBP25.47■■□□□ 1.67
MRPL55-228ENST00000476267 KIF21AQ7Z4S6 1674 aa25.36■■□□□ 1.65
MRPL55-228ENST00000476267 WIZO95785 1651 aa25.34■■□□□ 1.65
MRPL55-228ENST00000476267 PDS5BQ9NTI5 1447 aa25.26■■□□□ 1.63
MRPL55-228ENST00000476267 CADPSQ9ULU8 1353 aa25.22■■□□□ 1.63
MRPL55-228ENST00000476267 MRC2Q9UBG0 1479 aa25.09■■□□□ 1.61
MRPL55-228ENST00000476267 WDR62O43379 1518 aa25.08■■□□□ 1.61
MRPL55-228ENST00000476267 RSF1Q96T23 1441 aaPredicted RBP25.08■■□□□ 1.61
MRPL55-228ENST00000476267 TOP2AP11388 1531 aaKnown RBP25.02■■□□□ 1.6
MRPL55-228ENST00000476267 CFTRP13569 1480 aa24.98■■□□□ 1.59
MRPL55-228ENST00000476267 CEP164Q9UPV0 1460 aa24.97■■□□□ 1.59
MRPL55-228ENST00000476267 FANCD2Q9BXW9 1451 aa24.95■■□□□ 1.58
MRPL55-228ENST00000476267 PRDM2Q13029 1718 aa24.81■■□□□ 1.56
MRPL55-228ENST00000476267 URB2Q14146 1524 aaKnown RBP24.78■■□□□ 1.56
MRPL55-228ENST00000476267 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.54
MRPL55-228ENST00000476267 TOPBP1Q92547 1522 aa24.5■■□□□ 1.51
MRPL55-228ENST00000476267 IFT140Q96RY7 1462 aa24.47■■□□□ 1.51
MRPL55-228ENST00000476267 ZNF608Q9ULD9 1512 aaPredicted RBP24.45■■□□□ 1.51
MRPL55-228ENST00000476267 OSCARQ8IYS5 282 aa24.43■■□□□ 1.5
MRPL55-228ENST00000476267 DNMBPQ6XZF7 1577 aa24.42■■□□□ 1.5
MRPL55-228ENST00000476267 TRIM41Q8WV44 630 aa24.42■■□□□ 1.5
MRPL55-228ENST00000476267 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
MRPL55-228ENST00000476267 EIF4G3O43432 1585 aaKnown RBP24.37■■□□□ 1.49
MRPL55-228ENST00000476267 TARBP1Q13395 1621 aaKnown RBP24.34■■□□□ 1.49
MRPL55-228ENST00000476267 RIMBP3CA6NJZ7 1639 aa24.26■■□□□ 1.47
MRPL55-228ENST00000476267 RIMBP3BA6NNM3 1639 aa24.26■■□□□ 1.47
MRPL55-228ENST00000476267 RIMBP3Q9UFD9 1639 aa24.26■■□□□ 1.47
MRPL55-228ENST00000476267 POLA1P09884 1462 aaPredicted RBP24.25■■□□□ 1.47
MRPL55-228ENST00000476267 AQRO60306 1485 aaKnown RBP eCLIP24.19■■□□□ 1.466e-9■■■■■ 28.1
MRPL55-228ENST00000476267 CHD1O14646 1710 aa24.18■■□□□ 1.46
MRPL55-228ENST00000476267 ARHGEF11O15085 1522 aa24.16■■□□□ 1.46
MRPL55-228ENST00000476267 RAD54L2Q9Y4B4 1467 aa24.13■■□□□ 1.45
MRPL55-228ENST00000476267 WDR97A6NE52 1622 aa24.1■■□□□ 1.45
MRPL55-228ENST00000476267 CUX1P39880 1505 aa24.1■■□□□ 1.45
MRPL55-228ENST00000476267 FGD5Q6ZNL6 1462 aa24.08■■□□□ 1.45
MRPL55-228ENST00000476267 SOGA1O94964 1423 aa24.07■■□□□ 1.44
MRPL55-228ENST00000476267 TDRD9Q8NDG6 1382 aaKnown RBP24.02■■□□□ 1.44
MRPL55-228ENST00000476267 SNAPC4Q5SXM2 1469 aa23.97■■□□□ 1.43
MRPL55-228ENST00000476267 ARAP1Q96P48 1450 aa23.94■■□□□ 1.42
MRPL55-228ENST00000476267 CLASP1Q7Z460 1538 aa23.93■■□□□ 1.42
MRPL55-228ENST00000476267 MAGI1Q96QZ7 1491 aaPredicted RBP23.92■■□□□ 1.42
MRPL55-228ENST00000476267 GRIN2BQ13224 1484 aa23.89■■□□□ 1.42
MRPL55-228ENST00000476267 FBLN2P98095 1184 aa23.89■■□□□ 1.41
MRPL55-228ENST00000476267 PBRM1Q86U86 1689 aa23.89■■□□□ 1.41
MRPL55-228ENST00000476267 ABCA5Q8WWZ7 1642 aa23.85■■□□□ 1.41
MRPL55-228ENST00000476267 SYNJ1O43426 1573 aa23.84■■□□□ 1.41
MRPL55-228ENST00000476267 SYNJ2O15056 1496 aa23.84■■□□□ 1.41
MRPL55-228ENST00000476267 CYB5RLQ6IPT4 315 aa23.84■■□□□ 1.41
MRPL55-228ENST00000476267 ABCA10Q8WWZ4 1543 aa23.83■■□□□ 1.41
MRPL55-228ENST00000476267 GAPVD1Q14C86 1478 aa23.81■■□□□ 1.4
MRPL55-228ENST00000476267 SUPT5HO00267 1087 aaKnown RBP23.78■■□□□ 1.4
MRPL55-228ENST00000476267 CHMP7Q8WUX9 453 aaPredicted RBP23.76■■□□□ 1.39
MRPL55-228ENST00000476267 BIVM-ERCC5R4GMW8 1640 aa23.75■■□□□ 1.39
MRPL55-228ENST00000476267 TOP2BQ02880 1626 aa23.72■■□□□ 1.39
MRPL55-228ENST00000476267 WRNQ14191 1432 aaPredicted RBP eCLIP23.66■■□□□ 1.38
MRPL55-228ENST00000476267 ADAMTS12P58397 1594 aa23.65■■□□□ 1.38
MRPL55-228ENST00000476267 GRIN2AQ12879 1464 aa23.62■■□□□ 1.37
MRPL55-228ENST00000476267 CEP170Q5SW79 1584 aa23.57■■□□□ 1.36
MRPL55-228ENST00000476267 NUP160Q12769 1436 aa23.56■■□□□ 1.36
MRPL55-228ENST00000476267 ERICH3Q5RHP9 1530 aa23.54■■□□□ 1.36
MRPL55-228ENST00000476267 ERCC6L2Q5T890 1561 aa23.53■■□□□ 1.36
MRPL55-228ENST00000476267 TRHP20396 242 aaPredicted RBP23.53■■□□□ 1.36
MRPL55-228ENST00000476267 SHROOM2Q13796 1616 aa23.51■■□□□ 1.35
MRPL55-228ENST00000476267 FHAD1B1AJZ9 1412 aa23.5■■□□□ 1.35
MRPL55-228ENST00000476267 RUSC2Q8N2Y8 1516 aa23.33■■□□□ 1.33
MRPL55-228ENST00000476267 PRG4Q92954 1404 aaPredicted RBP23.25■■□□□ 1.31
MRPL55-228ENST00000476267 CUL7Q14999 1698 aa23.2■■□□□ 1.3
MRPL55-228ENST00000476267 JPH4Q96JJ6 628 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms