RNA–Protein interactions for RNA: ENST00000476259.1

RAPGEF3-208, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 3

Gene RAPGEF3, Length 824 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-208ENST00000476259 NISCHQ9Y2I1 1504 aa44.13■■■■■ 4.65
RAPGEF3-208ENST00000476259 CCDC180Q9P1Z9 1646 aa39.49■■■■□ 3.91
RAPGEF3-208ENST00000476259 ABCC9O60706 1549 aa38.9■■■■□ 3.82
RAPGEF3-208ENST00000476259 RB1CC1Q8TDY2 1594 aa37.29■■■■□ 3.56
RAPGEF3-208ENST00000476259 NACADO15069 1562 aa37.14■■■■□ 3.54
RAPGEF3-208ENST00000476259 DCAF8L2P0C7V8 631 aa36.98■■■■□ 3.51
RAPGEF3-208ENST00000476259 MYO15BQ96JP2 1530 aa36.76■■■■□ 3.48
RAPGEF3-208ENST00000476259 ZCCHC6Q5VYS8 1495 aaKnown RBP36.69■■■■□ 3.46
RAPGEF3-208ENST00000476259 UNC13AQ9UPW8 1703 aa36.58■■■■□ 3.45
RAPGEF3-208ENST00000476259 DCAF1Q9Y4B6 1507 aa36.49■■■■□ 3.43
RAPGEF3-208ENST00000476259 PABPN1Q86U42 306 aaKnown RBP eCLIP36.24■■■■□ 3.39
RAPGEF3-208ENST00000476259 BICRAQ9NZM4 1560 aa36.18■■■■□ 3.38
RAPGEF3-208ENST00000476259 SCRIBQ14160 1630 aa35.98■■■■□ 3.35
RAPGEF3-208ENST00000476259 DNAJC5BQ9UF47 199 aa35.97■■■■□ 3.35
RAPGEF3-208ENST00000476259 SHROOM4Q9ULL8 1493 aa35.73■■■■□ 3.31
RAPGEF3-208ENST00000476259 EIF4G1Q04637 1599 aaKnown RBP35.25■■■■□ 3.23
RAPGEF3-208ENST00000476259 CC2D2AQ9P2K1 1620 aa35.22■■■■□ 3.23
RAPGEF3-208ENST00000476259 CECR2Q9BXF3 1484 aa34.98■■■■□ 3.19
RAPGEF3-208ENST00000476259 SMARCA4P51532 1647 aa34.37■■■■□ 3.09
RAPGEF3-208ENST00000476259 BAZ1AQ9NRL2 1556 aaPredicted RBP34.25■■■■□ 3.07
RAPGEF3-208ENST00000476259 NCAPD3P42695 1498 aa34.22■■■■□ 3.07
RAPGEF3-208ENST00000476259 ATAD2BQ9ULI0 1458 aa34.21■■■■□ 3.07
RAPGEF3-208ENST00000476259 SMARCA2P51531 1590 aa34.19■■■■□ 3.06
RAPGEF3-208ENST00000476259 HMGXB3Q12766 1538 aa34.09■■■■□ 3.05
RAPGEF3-208ENST00000476259 MROH2BQ7Z745 1585 aa34.02■■■■□ 3.04
RAPGEF3-208ENST00000476259 PEG3Q9GZU2 1588 aa34.01■■■■□ 3.03
RAPGEF3-208ENST00000476259 BAZ1BQ9UIG0 1483 aaKnown RBP33.94■■■■□ 3.02
RAPGEF3-208ENST00000476259 WIZO95785 1651 aa33.7■■■□□ 2.99
RAPGEF3-208ENST00000476259 NESP48681 1621 aa33.57■■■□□ 2.96
RAPGEF3-208ENST00000476259 ERCC6Q03468 1493 aa33.56■■■□□ 2.96
RAPGEF3-208ENST00000476259 LAMC3Q9Y6N6 1575 aa33.46■■■□□ 2.95
RAPGEF3-208ENST00000476259 RSF1Q96T23 1441 aaPredicted RBP33.45■■■□□ 2.95
RAPGEF3-208ENST00000476259 CUX2O14529 1486 aa33.32■■■□□ 2.92
RAPGEF3-208ENST00000476259 TOP2AP11388 1531 aaKnown RBP33.27■■■□□ 2.92
RAPGEF3-208ENST00000476259 KIF21AQ7Z4S6 1674 aa33.26■■■□□ 2.92
RAPGEF3-208ENST00000476259 CADPSQ9ULU8 1353 aa33.2■■■□□ 2.9
RAPGEF3-208ENST00000476259 THOC2Q8NI27 1593 aaKnown RBP33.19■■■□□ 2.9
RAPGEF3-208ENST00000476259 PDS5BQ9NTI5 1447 aa33.18■■■□□ 2.9
RAPGEF3-208ENST00000476259 CFTRP13569 1480 aa32.95■■■□□ 2.87
RAPGEF3-208ENST00000476259 MRC2Q9UBG0 1479 aa32.89■■■□□ 2.86
RAPGEF3-208ENST00000476259 CEP164Q9UPV0 1460 aa32.87■■■□□ 2.85
RAPGEF3-208ENST00000476259 FANCD2Q9BXW9 1451 aa32.86■■■□□ 2.85
RAPGEF3-208ENST00000476259 PRDM2Q13029 1718 aa32.86■■■□□ 2.85
RAPGEF3-208ENST00000476259 CCDC88BA6NC98 1476 aa32.85■■■□□ 2.85
RAPGEF3-208ENST00000476259 WDR62O43379 1518 aa32.81■■■□□ 2.84
RAPGEF3-208ENST00000476259 DNAJC5Q9H3Z4 198 aa32.66■■■□□ 2.82
RAPGEF3-208ENST00000476259 URB2Q14146 1524 aaKnown RBP32.56■■■□□ 2.8
RAPGEF3-208ENST00000476259 SUPT5HO00267 1087 aaKnown RBP32.34■■■□□ 2.77
RAPGEF3-208ENST00000476259 TOPBP1Q92547 1522 aa32.31■■■□□ 2.76
RAPGEF3-208ENST00000476259 ABCC8Q09428 1581 aa32.27■■■□□ 2.76
RAPGEF3-208ENST00000476259 DNMBPQ6XZF7 1577 aa32.27■■■□□ 2.76
RAPGEF3-208ENST00000476259 IFT140Q96RY7 1462 aa32.17■■■□□ 2.74
RAPGEF3-208ENST00000476259 ZNF608Q9ULD9 1512 aaPredicted RBP32.07■■■□□ 2.72
RAPGEF3-208ENST00000476259 TARBP1Q13395 1621 aaKnown RBP32.02■■■□□ 2.72
RAPGEF3-208ENST00000476259 EIF4G3O43432 1585 aaKnown RBP32■■■□□ 2.71
RAPGEF3-208ENST00000476259 POLA1P09884 1462 aaPredicted RBP32■■■□□ 2.71
RAPGEF3-208ENST00000476259 CUX1P39880 1505 aa31.94■■■□□ 2.7
RAPGEF3-208ENST00000476259 FGD5Q6ZNL6 1462 aa31.89■■■□□ 2.7
RAPGEF3-208ENST00000476259 RAD54L2Q9Y4B4 1467 aa31.86■■■□□ 2.69
RAPGEF3-208ENST00000476259 SOGA1O94964 1423 aa31.83■■■□□ 2.69
RAPGEF3-208ENST00000476259 OSCARQ8IYS5 282 aa31.83■■■□□ 2.69
RAPGEF3-208ENST00000476259 AQRO60306 1485 aaKnown RBP eCLIP31.83■■■□□ 2.69
RAPGEF3-208ENST00000476259 WDR97A6NE52 1622 aa31.74■■■□□ 2.67
RAPGEF3-208ENST00000476259 CHD1O14646 1710 aa31.72■■■□□ 2.67
RAPGEF3-208ENST00000476259 TDRD9Q8NDG6 1382 aaKnown RBP31.69■■■□□ 2.66
RAPGEF3-208ENST00000476259 BIVM-ERCC5R4GMW8 1640 aa31.63■■■□□ 2.65
RAPGEF3-208ENST00000476259 TOP2BQ02880 1626 aa31.59■■■□□ 2.65
RAPGEF3-208ENST00000476259 PBRM1Q86U86 1689 aa31.57■■■□□ 2.65
RAPGEF3-208ENST00000476259 SYNJ1O43426 1573 aa31.57■■■□□ 2.64
RAPGEF3-208ENST00000476259 WRNQ14191 1432 aaPredicted RBP eCLIP31.57■■■□□ 2.64
RAPGEF3-208ENST00000476259 SNAPC4Q5SXM2 1469 aa31.55■■■□□ 2.64
RAPGEF3-208ENST00000476259 ABCA10Q8WWZ4 1543 aa31.54■■■□□ 2.64
RAPGEF3-208ENST00000476259 GRIN2BQ13224 1484 aa31.52■■■□□ 2.64
RAPGEF3-208ENST00000476259 FBLN2P98095 1184 aa31.51■■■□□ 2.63
RAPGEF3-208ENST00000476259 ABCA5Q8WWZ7 1642 aa31.5■■■□□ 2.63
RAPGEF3-208ENST00000476259 MAGI1Q96QZ7 1491 aaPredicted RBP31.49■■■□□ 2.63
RAPGEF3-208ENST00000476259 GAPVD1Q14C86 1478 aa31.48■■■□□ 2.63
RAPGEF3-208ENST00000476259 TRIM41Q8WV44 630 aa31.48■■■□□ 2.63
RAPGEF3-208ENST00000476259 RIMBP3CA6NJZ7 1639 aa31.48■■■□□ 2.63
RAPGEF3-208ENST00000476259 RIMBP3BA6NNM3 1639 aa31.48■■■□□ 2.63
RAPGEF3-208ENST00000476259 RIMBP3Q9UFD9 1639 aa31.48■■■□□ 2.63
RAPGEF3-208ENST00000476259 ARHGEF11O15085 1522 aa31.39■■■□□ 2.61
RAPGEF3-208ENST00000476259 SYNJ2O15056 1496 aa31.37■■■□□ 2.61
RAPGEF3-208ENST00000476259 CHMP7Q8WUX9 453 aaPredicted RBP31.35■■■□□ 2.61
RAPGEF3-208ENST00000476259 CLASP1Q7Z460 1538 aa31.28■■■□□ 2.6
RAPGEF3-208ENST00000476259 ADAMTS12P58397 1594 aa31.22■■■□□ 2.59
RAPGEF3-208ENST00000476259 ERICH3Q5RHP9 1530 aa31.18■■■□□ 2.58
RAPGEF3-208ENST00000476259 GRIN2AQ12879 1464 aa31.14■■■□□ 2.57
RAPGEF3-208ENST00000476259 ARAP1Q96P48 1450 aa31.1■■■□□ 2.57
RAPGEF3-208ENST00000476259 FHAD1B1AJZ9 1412 aa31.09■■■□□ 2.57
RAPGEF3-208ENST00000476259 CYB5RLQ6IPT4 315 aa31.05■■■□□ 2.56
RAPGEF3-208ENST00000476259 CEP170Q5SW79 1584 aa31.03■■■□□ 2.56
RAPGEF3-208ENST00000476259 NUP160Q12769 1436 aa30.98■■■□□ 2.55
RAPGEF3-208ENST00000476259 KIF27Q86VH2 1401 aa30.92■■■□□ 2.54
RAPGEF3-208ENST00000476259 CUL7Q14999 1698 aa30.88■■■□□ 2.53
RAPGEF3-208ENST00000476259 SHROOM2Q13796 1616 aa30.87■■■□□ 2.53
RAPGEF3-208ENST00000476259 ERCC6L2Q5T890 1561 aa30.83■■■□□ 2.53
RAPGEF3-208ENST00000476259 IGF1RP08069 1367 aa30.81■■■□□ 2.52
RAPGEF3-208ENST00000476259 RUSC2Q8N2Y8 1516 aa30.78■■■□□ 2.52
RAPGEF3-208ENST00000476259 CARMIL1Q5VZK9 1371 aa30.65■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms