RNA–Protein interactions for RNA: ENST00000476089.1

ITGA4-207, Transcript of integrin subunit alpha 4, humanhuman

TSL 2

Gene ITGA4, Length 1,846 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-207ENST00000476089 NISCHQ9Y2I1 1504 aa46.03■■■■■ 4.96
ITGA4-207ENST00000476089 CCDC180Q9P1Z9 1646 aa40.08■■■■■ 4.01
ITGA4-207ENST00000476089 ZCCHC6Q5VYS8 1495 aaKnown RBP38.67■■■■□ 3.78
ITGA4-207ENST00000476089 DCAF8L2P0C7V8 631 aa38.12■■■■□ 3.69
ITGA4-207ENST00000476089 DCAF1Q9Y4B6 1507 aa38.05■■■■□ 3.68
ITGA4-207ENST00000476089 ABCC9O60706 1549 aa37.85■■■■□ 3.65
ITGA4-207ENST00000476089 SHROOM4Q9ULL8 1493 aa37.67■■■■□ 3.62
ITGA4-207ENST00000476089 MYO15BQ96JP2 1530 aa37.56■■■■□ 3.6
ITGA4-207ENST00000476089 NACADO15069 1562 aa37.34■■■■□ 3.57
ITGA4-207ENST00000476089 RB1CC1Q8TDY2 1594 aa37.01■■■■□ 3.52
ITGA4-207ENST00000476089 SCRIBQ14160 1630 aa36.9■■■■□ 3.5
ITGA4-207ENST00000476089 SUPT5HO00267 1087 aaKnown RBP36.34■■■■□ 3.41
ITGA4-207ENST00000476089 UNC13AQ9UPW8 1703 aa36.2■■■■□ 3.39
ITGA4-207ENST00000476089 BICRAQ9NZM4 1560 aa35.81■■■■□ 3.32
ITGA4-207ENST00000476089 RSF1Q96T23 1441 aaPredicted RBP35.74■■■■□ 3.31
ITGA4-207ENST00000476089 PABPN1Q86U42 306 aaKnown RBP eCLIP35.73■■■■□ 3.31
ITGA4-207ENST00000476089 CECR2Q9BXF3 1484 aa35.73■■■■□ 3.31
ITGA4-207ENST00000476089 BAZ1AQ9NRL2 1556 aaPredicted RBP35.56■■■■□ 3.28
ITGA4-207ENST00000476089 MROH2BQ7Z745 1585 aa35.55■■■■□ 3.28
ITGA4-207ENST00000476089 SMARCA4P51532 1647 aa35.36■■■■□ 3.25
ITGA4-207ENST00000476089 WIZO95785 1651 aa35.28■■■■□ 3.24
ITGA4-207ENST00000476089 TOP2AP11388 1531 aaKnown RBP34.92■■■■□ 3.18
ITGA4-207ENST00000476089 PEG3Q9GZU2 1588 aa34.9■■■■□ 3.18
ITGA4-207ENST00000476089 CHIC1Q5VXU3 224 aa34.78■■■■□ 3.16
ITGA4-207ENST00000476089 SMARCA2P51531 1590 aa34.78■■■■□ 3.16
ITGA4-207ENST00000476089 EIF4G1Q04637 1599 aaKnown RBP34.77■■■■□ 3.16
ITGA4-207ENST00000476089 ATAD2BQ9ULI0 1458 aa34.76■■■■□ 3.16
ITGA4-207ENST00000476089 BAZ1BQ9UIG0 1483 aaKnown RBP34.61■■■■□ 3.13
ITGA4-207ENST00000476089 CCDC88BA6NC98 1476 aa34.57■■■■□ 3.12
ITGA4-207ENST00000476089 NCAPD3P42695 1498 aa34.44■■■■□ 3.1
ITGA4-207ENST00000476089 HMGXB3Q12766 1538 aa34.4■■■■□ 3.1
ITGA4-207ENST00000476089 CC2D2AQ9P2K1 1620 aa34.24■■■■□ 3.07
ITGA4-207ENST00000476089 TRIM41Q8WV44 630 aa34.18■■■■□ 3.06
ITGA4-207ENST00000476089 ABCC8Q09428 1581 aa33.87■■■■□ 3.01
ITGA4-207ENST00000476089 CFTRP13569 1480 aa33.71■■■□□ 2.99
ITGA4-207ENST00000476089 WRNQ14191 1432 aaPredicted RBP eCLIP33.68■■■□□ 2.98
ITGA4-207ENST00000476089 CADPSQ9ULU8 1353 aa33.6■■■□□ 2.97
ITGA4-207ENST00000476089 PRDM2Q13029 1718 aa33.54■■■□□ 2.96
ITGA4-207ENST00000476089 FAM9AQ8IZU1 332 aaPredicted RBP33.54■■■□□ 2.96
ITGA4-207ENST00000476089 SYNJ1O43426 1573 aa33.49■■■□□ 2.95
ITGA4-207ENST00000476089 LOC105371045A0A1W2PR82 267 aa33.46■■■□□ 2.95
ITGA4-207ENST00000476089 TOP2BQ02880 1626 aa33.37■■■□□ 2.93
ITGA4-207ENST00000476089 BIVM-ERCC5R4GMW8 1640 aa33.32■■■□□ 2.92
ITGA4-207ENST00000476089 DNAJC5BQ9UF47 199 aa33.29■■■□□ 2.92
ITGA4-207ENST00000476089 EEA1Q15075 1411 aa33.28■■■□□ 2.92
ITGA4-207ENST00000476089 LAMC3Q9Y6N6 1575 aa33.28■■■□□ 2.92
ITGA4-207ENST00000476089 SOGA1O94964 1423 aa33.26■■■□□ 2.92
ITGA4-207ENST00000476089 CUX1P39880 1505 aa33.24■■■□□ 2.91
ITGA4-207ENST00000476089 NESP48681 1621 aa33.23■■■□□ 2.91
ITGA4-207ENST00000476089 FANCD2Q9BXW9 1451 aa33.23■■■□□ 2.91
ITGA4-207ENST00000476089 RUSC2Q8N2Y8 1516 aa33.11■■■□□ 2.89
ITGA4-207ENST00000476089 CSRNP3Q8WYN3 585 aa33.09■■■□□ 2.89
ITGA4-207ENST00000476089 EHMT2Q96KQ7 1210 aa33.07■■■□□ 2.89
ITGA4-207ENST00000476089 PDS5BQ9NTI5 1447 aa33.05■■■□□ 2.88
ITGA4-207ENST00000476089 CEP164Q9UPV0 1460 aa33.02■■■□□ 2.88
ITGA4-207ENST00000476089 DNMBPQ6XZF7 1577 aa32.93■■■□□ 2.86
ITGA4-207ENST00000476089 FGD5Q6ZNL6 1462 aa32.88■■■□□ 2.85
ITGA4-207ENST00000476089 TOPBP1Q92547 1522 aa32.86■■■□□ 2.85
ITGA4-207ENST00000476089 KIF27Q86VH2 1401 aa32.84■■■□□ 2.85
ITGA4-207ENST00000476089 KIF21AQ7Z4S6 1674 aa32.83■■■□□ 2.85
ITGA4-207ENST00000476089 GOLGA3Q08378 1498 aa32.81■■■□□ 2.84
ITGA4-207ENST00000476089 KIF21BO75037 1637 aa32.79■■■□□ 2.84
ITGA4-207ENST00000476089 URB2Q14146 1524 aaKnown RBP32.77■■■□□ 2.84
ITGA4-207ENST00000476089 UBTFP17480 764 aaKnown RBP32.73■■■□□ 2.83
ITGA4-207ENST00000476089 TNIKQ9UKE5 1360 aa32.72■■■□□ 2.83
ITGA4-207ENST00000476089 CUX2O14529 1486 aa32.71■■■□□ 2.83
ITGA4-207ENST00000476089 POLA1P09884 1462 aaPredicted RBP32.7■■■□□ 2.83
ITGA4-207ENST00000476089 RAD54L2Q9Y4B4 1467 aa32.6■■■□□ 2.81
ITGA4-207ENST00000476089 ABCA10Q8WWZ4 1543 aa32.59■■■□□ 2.81
ITGA4-207ENST00000476089 MRC2Q9UBG0 1479 aa32.59■■■□□ 2.81
ITGA4-207ENST00000476089 PRXQ9BXM0 1461 aa32.59■■■□□ 2.81
ITGA4-207ENST00000476089 RAPGEF2Q9Y4G8 1499 aa32.58■■■□□ 2.81
ITGA4-207ENST00000476089 ERICH3Q5RHP9 1530 aa32.56■■■□□ 2.8
ITGA4-207ENST00000476089 CEP162Q5TB80 1403 aa32.55■■■□□ 2.8
ITGA4-207ENST00000476089 ERCC6Q03468 1493 aa32.5■■■□□ 2.79
ITGA4-207ENST00000476089 IGF1RP08069 1367 aa32.5■■■□□ 2.79
ITGA4-207ENST00000476089 WDR97A6NE52 1622 aa32.43■■■□□ 2.78
ITGA4-207ENST00000476089 WDR62O43379 1518 aa32.38■■■□□ 2.77
ITGA4-207ENST00000476089 CARMIL1Q5VZK9 1371 aa32.38■■■□□ 2.77
ITGA4-207ENST00000476089 TARBP1Q13395 1621 aaKnown RBP32.33■■■□□ 2.77
ITGA4-207ENST00000476089 TDRD9Q8NDG6 1382 aaKnown RBP32.3■■■□□ 2.76
ITGA4-207ENST00000476089 CLIP1P30622 1438 aa32.29■■■□□ 2.76
ITGA4-207ENST00000476089 ABCA5Q8WWZ7 1642 aa32.29■■■□□ 2.76
ITGA4-207ENST00000476089 GAPVD1Q14C86 1478 aa32.28■■■□□ 2.76
ITGA4-207ENST00000476089 CUL7Q14999 1698 aa32.26■■■□□ 2.75
ITGA4-207ENST00000476089 THOC2Q8NI27 1593 aaKnown RBP32.24■■■□□ 2.75
ITGA4-207ENST00000476089 IFT140Q96RY7 1462 aa32.22■■■□□ 2.75
ITGA4-207ENST00000476089 RANGAP1P46060 587 aaPredicted RBP32.16■■■□□ 2.74
ITGA4-207ENST00000476089 PCGF6Q9BYE7 350 aa32.08■■■□□ 2.73
ITGA4-207ENST00000476089 TRIM26Q12899 539 aaPredicted RBP32.07■■■□□ 2.73
ITGA4-207ENST00000476089 AQRO60306 1485 aaKnown RBP eCLIP32.07■■■□□ 2.72
ITGA4-207ENST00000476089 PBRM1Q86U86 1689 aa32.06■■■□□ 2.72
ITGA4-207ENST00000476089 VPS8Q8N3P4 1428 aa32.01■■■□□ 2.71
ITGA4-207ENST00000476089 GRIN2BQ13224 1484 aa32.01■■■□□ 2.71
ITGA4-207ENST00000476089 ZNF608Q9ULD9 1512 aaPredicted RBP32■■■□□ 2.71
ITGA4-207ENST00000476089 FHAD1B1AJZ9 1412 aa31.93■■■□□ 2.7
ITGA4-207ENST00000476089 PPARGC1BQ86YN6 1023 aaKnown RBP31.91■■■□□ 2.7
ITGA4-207ENST00000476089 CTTNBP2Q8WZ74 1663 aa31.91■■■□□ 2.7
ITGA4-207ENST00000476089 ARAP1Q96P48 1450 aa31.9■■■□□ 2.7
ITGA4-207ENST00000476089 EIF4G3O43432 1585 aaKnown RBP31.9■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms