RNA–Protein interactions for RNA: ENST00000475524.1

MCF2L-224, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-224ENST00000475524 NISCHQ9Y2I1 1504 aa35.97■■■■□ 3.35
MCF2L-224ENST00000475524 CCDC180Q9P1Z9 1646 aa31.88■■■□□ 2.69
MCF2L-224ENST00000475524 ABCC9O60706 1549 aa30.41■■■□□ 2.46
MCF2L-224ENST00000475524 ZCCHC6Q5VYS8 1495 aaKnown RBP30.11■■■□□ 2.41
MCF2L-224ENST00000475524 DCAF1Q9Y4B6 1507 aa29.91■■■□□ 2.38
MCF2L-224ENST00000475524 MYO15BQ96JP2 1530 aa29.86■■■□□ 2.37
MCF2L-224ENST00000475524 NACADO15069 1562 aa29.78■■■□□ 2.36
MCF2L-224ENST00000475524 RB1CC1Q8TDY2 1594 aa29.66■■■□□ 2.34
MCF2L-224ENST00000475524 DCAF8L2P0C7V8 631 aa29.56■■■□□ 2.32
MCF2L-224ENST00000475524 UNC13AQ9UPW8 1703 aa28.99■■■□□ 2.23
MCF2L-224ENST00000475524 SCRIBQ14160 1630 aa28.94■■■□□ 2.22
MCF2L-224ENST00000475524 BICRAQ9NZM4 1560 aa28.7■■■□□ 2.18
MCF2L-224ENST00000475524 SHROOM4Q9ULL8 1493 aa28.62■■■□□ 2.17
MCF2L-224ENST00000475524 PABPN1Q86U42 306 aaKnown RBP eCLIP28.41■■■□□ 2.14
MCF2L-224ENST00000475524 EIF4G1Q04637 1599 aaKnown RBP27.9■■■□□ 2.06
MCF2L-224ENST00000475524 BAZ1AQ9NRL2 1556 aaPredicted RBP27.89■■■□□ 2.05
MCF2L-224ENST00000475524 CECR2Q9BXF3 1484 aa27.86■■■□□ 2.05
MCF2L-224ENST00000475524 SMARCA4P51532 1647 aa27.81■■■□□ 2.04
MCF2L-224ENST00000475524 MROH2BQ7Z745 1585 aa27.68■■■□□ 2.02
MCF2L-224ENST00000475524 CC2D2AQ9P2K1 1620 aa27.63■■■□□ 2.01
MCF2L-224ENST00000475524 PEG3Q9GZU2 1588 aa27.61■■■□□ 2.01
MCF2L-224ENST00000475524 RSF1Q96T23 1441 aaPredicted RBP27.56■■■□□ 2
MCF2L-224ENST00000475524 SMARCA2P51531 1590 aa27.56■■■□□ 2
MCF2L-224ENST00000475524 ATAD2BQ9ULI0 1458 aa27.49■■□□□ 1.99
MCF2L-224ENST00000475524 NCAPD3P42695 1498 aa27.44■■□□□ 1.98
MCF2L-224ENST00000475524 WIZO95785 1651 aa27.41■■□□□ 1.98
MCF2L-224ENST00000475524 HMGXB3Q12766 1538 aa27.41■■□□□ 1.98
MCF2L-224ENST00000475524 DNAJC5BQ9UF47 199 aa27.32■■□□□ 1.96
MCF2L-224ENST00000475524 BAZ1BQ9UIG0 1483 aaKnown RBP27.29■■□□□ 1.96
MCF2L-224ENST00000475524 TOP2AP11388 1531 aaKnown RBP27.22■■□□□ 1.95
MCF2L-224ENST00000475524 SUPT5HO00267 1087 aaKnown RBP27.09■■□□□ 1.93
MCF2L-224ENST00000475524 CCDC88BA6NC98 1476 aa26.81■■□□□ 1.88
MCF2L-224ENST00000475524 LAMC3Q9Y6N6 1575 aa26.67■■□□□ 1.86
MCF2L-224ENST00000475524 CADPSQ9ULU8 1353 aa26.61■■□□□ 1.85
MCF2L-224ENST00000475524 CFTRP13569 1480 aa26.61■■□□□ 1.85
MCF2L-224ENST00000475524 PRDM2Q13029 1718 aa26.58■■□□□ 1.85
MCF2L-224ENST00000475524 NESP48681 1621 aa26.47■■□□□ 1.83
MCF2L-224ENST00000475524 PDS5BQ9NTI5 1447 aa26.4■■□□□ 1.82
MCF2L-224ENST00000475524 FANCD2Q9BXW9 1451 aa26.3■■□□□ 1.8
MCF2L-224ENST00000475524 KIF21AQ7Z4S6 1674 aa26.28■■□□□ 1.8
MCF2L-224ENST00000475524 CEP164Q9UPV0 1460 aa26.25■■□□□ 1.79
MCF2L-224ENST00000475524 ERCC6Q03468 1493 aa26.21■■□□□ 1.79
MCF2L-224ENST00000475524 MRC2Q9UBG0 1479 aa26.1■■□□□ 1.77
MCF2L-224ENST00000475524 THOC2Q8NI27 1593 aaKnown RBP26.09■■□□□ 1.77
MCF2L-224ENST00000475524 ABCC8Q09428 1581 aa26.08■■□□□ 1.77
MCF2L-224ENST00000475524 WDR62O43379 1518 aa26.03■■□□□ 1.76
MCF2L-224ENST00000475524 DNMBPQ6XZF7 1577 aa26.03■■□□□ 1.76
MCF2L-224ENST00000475524 URB2Q14146 1524 aaKnown RBP25.99■■□□□ 1.75
MCF2L-224ENST00000475524 WRNQ14191 1432 aaPredicted RBP eCLIP25.98■■□□□ 1.75
MCF2L-224ENST00000475524 BIVM-ERCC5R4GMW8 1640 aa25.96■■□□□ 1.75
MCF2L-224ENST00000475524 TOPBP1Q92547 1522 aa25.96■■□□□ 1.75
MCF2L-224ENST00000475524 CUX1P39880 1505 aa25.95■■□□□ 1.74
MCF2L-224ENST00000475524 TOP2BQ02880 1626 aa25.93■■□□□ 1.74
MCF2L-224ENST00000475524 SYNJ1O43426 1573 aa25.89■■□□□ 1.73
MCF2L-224ENST00000475524 CUX2O14529 1486 aa25.85■■□□□ 1.73
MCF2L-224ENST00000475524 FGD5Q6ZNL6 1462 aa25.77■■□□□ 1.72
MCF2L-224ENST00000475524 POLA1P09884 1462 aaPredicted RBP25.76■■□□□ 1.71
MCF2L-224ENST00000475524 IFT140Q96RY7 1462 aa25.69■■□□□ 1.7
MCF2L-224ENST00000475524 CHIC1Q5VXU3 224 aa25.69■■□□□ 1.7
MCF2L-224ENST00000475524 TARBP1Q13395 1621 aaKnown RBP25.66■■□□□ 1.7
MCF2L-224ENST00000475524 TRIM41Q8WV44 630 aa25.65■■□□□ 1.7
MCF2L-224ENST00000475524 WDR97A6NE52 1622 aa25.64■■□□□ 1.7
MCF2L-224ENST00000475524 SOGA1O94964 1423 aa25.63■■□□□ 1.69
MCF2L-224ENST00000475524 ABCA10Q8WWZ4 1543 aa25.6■■□□□ 1.69
MCF2L-224ENST00000475524 RAD54L2Q9Y4B4 1467 aa25.56■■□□□ 1.68
MCF2L-224ENST00000475524 ABCA5Q8WWZ7 1642 aa25.48■■□□□ 1.67
MCF2L-224ENST00000475524 EIF4G3O43432 1585 aaKnown RBP25.44■■□□□ 1.66
MCF2L-224ENST00000475524 ZNF608Q9ULD9 1512 aaPredicted RBP25.42■■□□□ 1.66
MCF2L-224ENST00000475524 KIF27Q86VH2 1401 aa25.42■■□□□ 1.66
MCF2L-224ENST00000475524 GAPVD1Q14C86 1478 aa25.39■■□□□ 1.65
MCF2L-224ENST00000475524 EEA1Q15075 1411 aa25.38■■□□□ 1.65
MCF2L-224ENST00000475524 PBRM1Q86U86 1689 aa25.36■■□□□ 1.65
MCF2L-224ENST00000475524 TDRD9Q8NDG6 1382 aaKnown RBP25.36■■□□□ 1.65
MCF2L-224ENST00000475524 ERICH3Q5RHP9 1530 aa25.34■■□□□ 1.65
MCF2L-224ENST00000475524 AQRO60306 1485 aaKnown RBP eCLIP25.33■■□□□ 1.65
MCF2L-224ENST00000475524 GRIN2BQ13224 1484 aa25.33■■□□□ 1.65
MCF2L-224ENST00000475524 CUL7Q14999 1698 aa25.24■■□□□ 1.63
MCF2L-224ENST00000475524 MAGI1Q96QZ7 1491 aaPredicted RBP25.24■■□□□ 1.63
MCF2L-224ENST00000475524 RUSC2Q8N2Y8 1516 aa25.23■■□□□ 1.63
MCF2L-224ENST00000475524 IGF1RP08069 1367 aa25.19■■□□□ 1.62
MCF2L-224ENST00000475524 ADAMTS12P58397 1594 aa25.18■■□□□ 1.62
MCF2L-224ENST00000475524 SNAPC4Q5SXM2 1469 aa25.17■■□□□ 1.62
MCF2L-224ENST00000475524 FHAD1B1AJZ9 1412 aa25.13■■□□□ 1.61
MCF2L-224ENST00000475524 CSRNP3Q8WYN3 585 aa25.11■■□□□ 1.61
MCF2L-224ENST00000475524 SYNJ2O15056 1496 aa25.1■■□□□ 1.61
MCF2L-224ENST00000475524 PRXQ9BXM0 1461 aa25.08■■□□□ 1.6
MCF2L-224ENST00000475524 CARMIL1Q5VZK9 1371 aa25.06■■□□□ 1.6
MCF2L-224ENST00000475524 KIF21BO75037 1637 aa25.06■■□□□ 1.6
MCF2L-224ENST00000475524 RAPGEF2Q9Y4G8 1499 aa25.02■■□□□ 1.6
MCF2L-224ENST00000475524 CHD1O14646 1710 aa25.02■■□□□ 1.6
MCF2L-224ENST00000475524 GRIN2AQ12879 1464 aa25■■□□□ 1.59
MCF2L-224ENST00000475524 FAM9AQ8IZU1 332 aaPredicted RBP24.97■■□□□ 1.59
MCF2L-224ENST00000475524 CHMP7Q8WUX9 453 aaPredicted RBP24.94■■□□□ 1.58
MCF2L-224ENST00000475524 GOLGA3Q08378 1498 aa24.89■■□□□ 1.58
MCF2L-224ENST00000475524 NUP160Q12769 1436 aa24.89■■□□□ 1.58
MCF2L-224ENST00000475524 CTTNBP2Q8WZ74 1663 aa24.84■■□□□ 1.57
MCF2L-224ENST00000475524 FBLN2P98095 1184 aa24.83■■□□□ 1.57
MCF2L-224ENST00000475524 CEP170Q5SW79 1584 aa24.83■■□□□ 1.57
MCF2L-224ENST00000475524 CLASP1Q7Z460 1538 aa24.78■■□□□ 1.56
MCF2L-224ENST00000475524 KIAA0586Q9BVV6 1533 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms