RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 NISCHQ9Y2I1 1504 aa38.5■■■■□ 3.75
CPSF3-203ENST00000475482 CCDC180Q9P1Z9 1646 aa34.4■■■■□ 3.1
CPSF3-203ENST00000475482 ABCC9O60706 1549 aa33.91■■■■□ 3.02
CPSF3-203ENST00000475482 RB1CC1Q8TDY2 1594 aa32.51■■■□□ 2.79
CPSF3-203ENST00000475482 NACADO15069 1562 aa32.42■■■□□ 2.78
CPSF3-203ENST00000475482 MYO15BQ96JP2 1530 aa32.18■■■□□ 2.74
CPSF3-203ENST00000475482 DCAF8L2P0C7V8 631 aa32.14■■■□□ 2.74
CPSF3-203ENST00000475482 ZCCHC6Q5VYS8 1495 aaKnown RBP32■■■□□ 2.71
CPSF3-203ENST00000475482 DCAF1Q9Y4B6 1507 aa31.89■■■□□ 2.7
CPSF3-203ENST00000475482 UNC13AQ9UPW8 1703 aa31.83■■■□□ 2.69
CPSF3-203ENST00000475482 PABPN1Q86U42 306 aaKnown RBP eCLIP31.61■■■□□ 2.65
CPSF3-203ENST00000475482 BICRAQ9NZM4 1560 aa31.6■■■□□ 2.65
CPSF3-203ENST00000475482 DNAJC5BQ9UF47 199 aa31.53■■■□□ 2.64
CPSF3-203ENST00000475482 SCRIBQ14160 1630 aa31.27■■■□□ 2.6
CPSF3-203ENST00000475482 SHROOM4Q9ULL8 1493 aa31.24■■■□□ 2.59
CPSF3-203ENST00000475482 EIF4G1Q04637 1599 aaKnown RBP30.75■■■□□ 2.51
CPSF3-203ENST00000475482 CC2D2AQ9P2K1 1620 aa30.71■■■□□ 2.51
CPSF3-203ENST00000475482 CECR2Q9BXF3 1484 aa30.53■■■□□ 2.48
CPSF3-203ENST00000475482 NCAPD3P42695 1498 aa29.94■■■□□ 2.38
CPSF3-203ENST00000475482 SMARCA4P51532 1647 aa29.94■■■□□ 2.38
CPSF3-203ENST00000475482 ATAD2BQ9ULI0 1458 aa29.88■■■□□ 2.37
CPSF3-203ENST00000475482 BAZ1AQ9NRL2 1556 aaPredicted RBP29.85■■■□□ 2.37
CPSF3-203ENST00000475482 SMARCA2P51531 1590 aa29.8■■■□□ 2.36
CPSF3-203ENST00000475482 HMGXB3Q12766 1538 aa29.74■■■□□ 2.35
CPSF3-203ENST00000475482 PEG3Q9GZU2 1588 aa29.72■■■□□ 2.35
CPSF3-203ENST00000475482 MROH2BQ7Z745 1585 aa29.65■■■□□ 2.34
CPSF3-203ENST00000475482 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
CPSF3-203ENST00000475482 WIZO95785 1651 aa29.3■■■□□ 2.28
CPSF3-203ENST00000475482 NESP48681 1621 aa29.27■■■□□ 2.28
CPSF3-203ENST00000475482 ERCC6Q03468 1493 aa29.22■■■□□ 2.27
CPSF3-203ENST00000475482 RSF1Q96T23 1441 aaPredicted RBP29.19■■■□□ 2.26
CPSF3-203ENST00000475482 LAMC3Q9Y6N6 1575 aa29.18■■■□□ 2.26
CPSF3-203ENST00000475482 CUX2O14529 1486 aa29.13■■■□□ 2.25
CPSF3-203ENST00000475482 CADPSQ9ULU8 1353 aa29.01■■■□□ 2.24
CPSF3-203ENST00000475482 TOP2AP11388 1531 aaKnown RBP28.98■■■□□ 2.23
CPSF3-203ENST00000475482 PDS5BQ9NTI5 1447 aa28.96■■■□□ 2.23
CPSF3-203ENST00000475482 THOC2Q8NI27 1593 aaKnown RBP28.94■■■□□ 2.22
CPSF3-203ENST00000475482 KIF21AQ7Z4S6 1674 aa28.93■■■□□ 2.22
CPSF3-203ENST00000475482 CFTRP13569 1480 aa28.78■■■□□ 2.2
CPSF3-203ENST00000475482 MRC2Q9UBG0 1479 aa28.68■■■□□ 2.18
CPSF3-203ENST00000475482 DNAJC5Q9H3Z4 198 aa28.66■■■□□ 2.18
CPSF3-203ENST00000475482 FANCD2Q9BXW9 1451 aa28.66■■■□□ 2.18
CPSF3-203ENST00000475482 CCDC88BA6NC98 1476 aa28.65■■■□□ 2.18
CPSF3-203ENST00000475482 WDR62O43379 1518 aa28.64■■■□□ 2.18
CPSF3-203ENST00000475482 CEP164Q9UPV0 1460 aa28.64■■■□□ 2.17
CPSF3-203ENST00000475482 PRDM2Q13029 1718 aa28.54■■■□□ 2.16
CPSF3-203ENST00000475482 URB2Q14146 1524 aaKnown RBP28.42■■■□□ 2.14
CPSF3-203ENST00000475482 TOPBP1Q92547 1522 aa28.18■■■□□ 2.1
CPSF3-203ENST00000475482 ABCC8Q09428 1581 aa28.16■■■□□ 2.1
CPSF3-203ENST00000475482 DNMBPQ6XZF7 1577 aa28.11■■■□□ 2.09
CPSF3-203ENST00000475482 IFT140Q96RY7 1462 aa28.08■■■□□ 2.09
CPSF3-203ENST00000475482 SUPT5HO00267 1087 aaKnown RBP28.05■■■□□ 2.08
CPSF3-203ENST00000475482 ZNF608Q9ULD9 1512 aaPredicted RBP27.98■■■□□ 2.07
CPSF3-203ENST00000475482 TARBP1Q13395 1621 aaKnown RBP27.92■■■□□ 2.06
CPSF3-203ENST00000475482 POLA1P09884 1462 aaPredicted RBP27.91■■■□□ 2.06
CPSF3-203ENST00000475482 EIF4G3O43432 1585 aaKnown RBP27.85■■■□□ 2.05
CPSF3-203ENST00000475482 CUX1P39880 1505 aa27.83■■■□□ 2.05
CPSF3-203ENST00000475482 OSCARQ8IYS5 282 aa27.82■■■□□ 2.04
CPSF3-203ENST00000475482 FGD5Q6ZNL6 1462 aa27.77■■■□□ 2.04
CPSF3-203ENST00000475482 RAD54L2Q9Y4B4 1467 aa27.77■■■□□ 2.04
CPSF3-203ENST00000475482 SOGA1O94964 1423 aa27.77■■■□□ 2.04
CPSF3-203ENST00000475482 AQRO60306 1485 aaKnown RBP eCLIP27.76■■■□□ 2.041e-6■■■■□ 26.3
CPSF3-203ENST00000475482 WDR97A6NE52 1622 aa27.69■■■□□ 2.02
CPSF3-203ENST00000475482 TDRD9Q8NDG6 1382 aaKnown RBP27.64■■■□□ 2.02
CPSF3-203ENST00000475482 CHD1O14646 1710 aa27.57■■■□□ 2
CPSF3-203ENST00000475482 ABCA10Q8WWZ4 1543 aa27.53■■■□□ 2
CPSF3-203ENST00000475482 BIVM-ERCC5R4GMW8 1640 aa27.52■■■□□ 2
CPSF3-203ENST00000475482 TOP2BQ02880 1626 aa27.51■■□□□ 1.99
CPSF3-203ENST00000475482 GRIN2BQ13224 1484 aa27.5■■□□□ 1.99
CPSF3-203ENST00000475482 WRNQ14191 1432 aaPredicted RBP eCLIP27.5■■□□□ 1.99
CPSF3-203ENST00000475482 SNAPC4Q5SXM2 1469 aa27.48■■□□□ 1.99
CPSF3-203ENST00000475482 MAGI1Q96QZ7 1491 aaPredicted RBP27.48■■□□□ 1.99
CPSF3-203ENST00000475482 SYNJ1O43426 1573 aa27.47■■□□□ 1.99
CPSF3-203ENST00000475482 ABCA5Q8WWZ7 1642 aa27.45■■□□□ 1.99
CPSF3-203ENST00000475482 GAPVD1Q14C86 1478 aa27.44■■□□□ 1.98
CPSF3-203ENST00000475482 RIMBP3CA6NJZ7 1639 aa27.44■■□□□ 1.98
CPSF3-203ENST00000475482 RIMBP3BA6NNM3 1639 aa27.44■■□□□ 1.98
CPSF3-203ENST00000475482 RIMBP3Q9UFD9 1639 aa27.44■■□□□ 1.98
CPSF3-203ENST00000475482 TRIM41Q8WV44 630 aa27.42■■□□□ 1.98
CPSF3-203ENST00000475482 PBRM1Q86U86 1689 aa27.41■■□□□ 1.98
CPSF3-203ENST00000475482 FBLN2P98095 1184 aa27.4■■□□□ 1.98
CPSF3-203ENST00000475482 ARHGEF11O15085 1522 aa27.4■■□□□ 1.98
CPSF3-203ENST00000475482 SYNJ2O15056 1496 aa27.36■■□□□ 1.97
CPSF3-203ENST00000475482 CHMP7Q8WUX9 453 aaPredicted RBP27.32■■□□□ 1.96
CPSF3-203ENST00000475482 CLASP1Q7Z460 1538 aa27.31■■□□□ 1.96
CPSF3-203ENST00000475482 ERICH3Q5RHP9 1530 aa27.19■■□□□ 1.94
CPSF3-203ENST00000475482 ADAMTS12P58397 1594 aa27.18■■□□□ 1.94
CPSF3-203ENST00000475482 GRIN2AQ12879 1464 aa27.15■■□□□ 1.94
CPSF3-203ENST00000475482 ARAP1Q96P48 1450 aa27.15■■□□□ 1.94
CPSF3-203ENST00000475482 FHAD1B1AJZ9 1412 aa27.13■■□□□ 1.93
CPSF3-203ENST00000475482 CYB5RLQ6IPT4 315 aa27.11■■□□□ 1.93
CPSF3-203ENST00000475482 NUP160Q12769 1436 aa27.08■■□□□ 1.93
CPSF3-203ENST00000475482 CEP170Q5SW79 1584 aa27.04■■□□□ 1.92
CPSF3-203ENST00000475482 KIF27Q86VH2 1401 aa26.94■■□□□ 1.9
CPSF3-203ENST00000475482 IGF1RP08069 1367 aa26.93■■□□□ 1.9
CPSF3-203ENST00000475482 SHROOM2Q13796 1616 aa26.93■■□□□ 1.9
CPSF3-203ENST00000475482 ERCC6L2Q5T890 1561 aa26.87■■□□□ 1.89
CPSF3-203ENST00000475482 CUL7Q14999 1698 aa26.85■■□□□ 1.89
CPSF3-203ENST00000475482 RUSC2Q8N2Y8 1516 aa26.8■■□□□ 1.88
CPSF3-203ENST00000475482 JPH4Q96JJ6 628 aa26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms