RNA–Protein interactions for RNA: ENST00000475470.1

RPUSD3-215, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 2

Gene RPUSD3, Length 2,413 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-215ENST00000475470 NISCHQ9Y2I1 1504 aa33.72■■■□□ 2.99
RPUSD3-215ENST00000475470 CCDC180Q9P1Z9 1646 aa29.14■■■□□ 2.26
RPUSD3-215ENST00000475470 ZCCHC6Q5VYS8 1495 aaKnown RBP28.39■■■□□ 2.13
RPUSD3-215ENST00000475470 SHROOM4Q9ULL8 1493 aa27.97■■■□□ 2.07
RPUSD3-215ENST00000475470 DCAF8L2P0C7V8 631 aa27.94■■■□□ 2.06
RPUSD3-215ENST00000475470 DCAF1Q9Y4B6 1507 aa27.8■■■□□ 2.04
RPUSD3-215ENST00000475470 ABCC9O60706 1549 aa27.36■■□□□ 1.97
RPUSD3-215ENST00000475470 MYO15BQ96JP2 1530 aa27.31■■□□□ 1.96
RPUSD3-215ENST00000475470 SUPT5HO00267 1087 aaKnown RBP27.13■■□□□ 1.93
RPUSD3-215ENST00000475470 NACADO15069 1562 aa27.08■■□□□ 1.93
RPUSD3-215ENST00000475470 SCRIBQ14160 1630 aa26.98■■□□□ 1.91
RPUSD3-215ENST00000475470 RB1CC1Q8TDY2 1594 aa26.78■■□□□ 1.88
RPUSD3-215ENST00000475470 RSF1Q96T23 1441 aaPredicted RBP26.35■■□□□ 1.81
RPUSD3-215ENST00000475470 UNC13AQ9UPW8 1703 aa26.26■■□□□ 1.79
RPUSD3-215ENST00000475470 CECR2Q9BXF3 1484 aa26.22■■□□□ 1.79
RPUSD3-215ENST00000475470 CHIC1Q5VXU3 224 aa26.1■■□□□ 1.77
RPUSD3-215ENST00000475470 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
RPUSD3-215ENST00000475470 BAZ1AQ9NRL2 1556 aaPredicted RBP26■■□□□ 1.75
RPUSD3-215ENST00000475470 BICRAQ9NZM4 1560 aa25.96■■□□□ 1.75
RPUSD3-215ENST00000475470 PABPN1Q86U42 306 aaKnown RBP eCLIP25.94■■□□□ 1.74
RPUSD3-215ENST00000475470 WIZO95785 1651 aa25.92■■□□□ 1.74
RPUSD3-215ENST00000475470 SMARCA4P51532 1647 aa25.83■■□□□ 1.73
RPUSD3-215ENST00000475470 TOP2AP11388 1531 aaKnown RBP25.61■■□□□ 1.69
RPUSD3-215ENST00000475470 PEG3Q9GZU2 1588 aa25.45■■□□□ 1.66
RPUSD3-215ENST00000475470 TRIM41Q8WV44 630 aa25.44■■□□□ 1.66
RPUSD3-215ENST00000475470 CCDC88BA6NC98 1476 aa25.41■■□□□ 1.66
RPUSD3-215ENST00000475470 SMARCA2P51531 1590 aa25.4■■□□□ 1.66
RPUSD3-215ENST00000475470 ATAD2BQ9ULI0 1458 aa25.32■■□□□ 1.64
RPUSD3-215ENST00000475470 EIF4G1Q04637 1599 aaKnown RBP25.3■■□□□ 1.64
RPUSD3-215ENST00000475470 BAZ1BQ9UIG0 1483 aaKnown RBP25.23■■□□□ 1.63
RPUSD3-215ENST00000475470 LOC105371045A0A1W2PR82 267 aa25.2■■□□□ 1.62
RPUSD3-215ENST00000475470 FAM9AQ8IZU1 332 aaPredicted RBP25.05■■□□□ 1.6
RPUSD3-215ENST00000475470 ABCC8Q09428 1581 aa25.04■■□□□ 1.6
RPUSD3-215ENST00000475470 NCAPD3P42695 1498 aa25.01■■□□□ 1.59
RPUSD3-215ENST00000475470 HMGXB3Q12766 1538 aa24.98■■□□□ 1.59
RPUSD3-215ENST00000475470 WRNQ14191 1432 aaPredicted RBP eCLIP24.8■■□□□ 1.56
RPUSD3-215ENST00000475470 EHMT2Q96KQ7 1210 aa24.75■■□□□ 1.55
RPUSD3-215ENST00000475470 CC2D2AQ9P2K1 1620 aa24.71■■□□□ 1.55
RPUSD3-215ENST00000475470 SYNJ1O43426 1573 aa24.67■■□□□ 1.54
RPUSD3-215ENST00000475470 SOGA1O94964 1423 aa24.66■■□□□ 1.54
RPUSD3-215ENST00000475470 EEA1Q15075 1411 aa24.62■■□□□ 1.53
RPUSD3-215ENST00000475470 CFTRP13569 1480 aa24.58■■□□□ 1.53
RPUSD3-215ENST00000475470 RUSC2Q8N2Y8 1516 aa24.54■■□□□ 1.52
RPUSD3-215ENST00000475470 CSRNP3Q8WYN3 585 aa24.53■■□□□ 1.52
RPUSD3-215ENST00000475470 TOP2BQ02880 1626 aa24.51■■□□□ 1.51
RPUSD3-215ENST00000475470 PCGF6Q9BYE7 350 aa24.49■■□□□ 1.51
RPUSD3-215ENST00000475470 BIVM-ERCC5R4GMW8 1640 aa24.45■■□□□ 1.51
RPUSD3-215ENST00000475470 CADPSQ9ULU8 1353 aa24.44■■□□□ 1.5
RPUSD3-215ENST00000475470 PRDM2Q13029 1718 aa24.43■■□□□ 1.5
RPUSD3-215ENST00000475470 CUX1P39880 1505 aa24.37■■□□□ 1.49
RPUSD3-215ENST00000475470 TNIKQ9UKE5 1360 aa24.33■■□□□ 1.49
RPUSD3-215ENST00000475470 GOLGA3Q08378 1498 aa24.33■■□□□ 1.49
RPUSD3-215ENST00000475470 UBTFP17480 764 aaKnown RBP24.32■■□□□ 1.48
RPUSD3-215ENST00000475470 TRIM26Q12899 539 aaPredicted RBP24.32■■□□□ 1.48
RPUSD3-215ENST00000475470 CEP164Q9UPV0 1460 aa24.29■■□□□ 1.48
RPUSD3-215ENST00000475470 KIF21BO75037 1637 aa24.27■■□□□ 1.47
RPUSD3-215ENST00000475470 CEP162Q5TB80 1403 aa24.26■■□□□ 1.47
RPUSD3-215ENST00000475470 FANCD2Q9BXW9 1451 aa24.18■■□□□ 1.46
RPUSD3-215ENST00000475470 KIF27Q86VH2 1401 aa24.14■■□□□ 1.45
RPUSD3-215ENST00000475470 NESP48681 1621 aa24.13■■□□□ 1.45
RPUSD3-215ENST00000475470 RAPGEF2Q9Y4G8 1499 aa24.12■■□□□ 1.45
RPUSD3-215ENST00000475470 LAMC3Q9Y6N6 1575 aa24.09■■□□□ 1.45
RPUSD3-215ENST00000475470 FGD5Q6ZNL6 1462 aa24.06■■□□□ 1.44
RPUSD3-215ENST00000475470 DNAJC5BQ9UF47 199 aa24.05■■□□□ 1.44
RPUSD3-215ENST00000475470 HRCP23327 699 aa24.05■■□□□ 1.44
RPUSD3-215ENST00000475470 PRXQ9BXM0 1461 aa24.04■■□□□ 1.44
RPUSD3-215ENST00000475470 PPARGC1BQ86YN6 1023 aaKnown RBP24.03■■□□□ 1.44
RPUSD3-215ENST00000475470 ERICH3Q5RHP9 1530 aa24.02■■□□□ 1.44
RPUSD3-215ENST00000475470 CUX2O14529 1486 aa24■■□□□ 1.43
RPUSD3-215ENST00000475470 DNMBPQ6XZF7 1577 aa24■■□□□ 1.43
RPUSD3-215ENST00000475470 CLIP1P30622 1438 aa23.98■■□□□ 1.43
RPUSD3-215ENST00000475470 TOPBP1Q92547 1522 aa23.95■■□□□ 1.42
RPUSD3-215ENST00000475470 PDS5BQ9NTI5 1447 aa23.94■■□□□ 1.42
RPUSD3-215ENST00000475470 IGF1RP08069 1367 aa23.88■■□□□ 1.41
RPUSD3-215ENST00000475470 RANGAP1P46060 587 aaPredicted RBP23.88■■□□□ 1.41
RPUSD3-215ENST00000475470 POLA1P09884 1462 aaPredicted RBP23.87■■□□□ 1.41
RPUSD3-215ENST00000475470 URB2Q14146 1524 aaKnown RBP23.84■■□□□ 1.41
RPUSD3-215ENST00000475470 RAD54L2Q9Y4B4 1467 aa23.84■■□□□ 1.41
RPUSD3-215ENST00000475470 ABCA10Q8WWZ4 1543 aa23.82■■□□□ 1.4
RPUSD3-215ENST00000475470 VPS8Q8N3P4 1428 aa23.81■■□□□ 1.4
RPUSD3-215ENST00000475470 KIF21AQ7Z4S6 1674 aa23.8■■□□□ 1.4
RPUSD3-215ENST00000475470 CARMIL1Q5VZK9 1371 aa23.79■■□□□ 1.4
RPUSD3-215ENST00000475470 TTBK1Q5TCY1 1321 aaPredicted RBP23.78■■□□□ 1.4
RPUSD3-215ENST00000475470 APLP2Q06481 763 aa23.69■■□□□ 1.38
RPUSD3-215ENST00000475470 ARAP1Q96P48 1450 aa23.66■■□□□ 1.38
RPUSD3-215ENST00000475470 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
RPUSD3-215ENST00000475470 CUL7Q14999 1698 aa23.61■■□□□ 1.37
RPUSD3-215ENST00000475470 TDRD9Q8NDG6 1382 aaKnown RBP23.6■■□□□ 1.37
RPUSD3-215ENST00000475470 ARHGAP35Q9NRY4 1499 aa23.59■■□□□ 1.37
RPUSD3-215ENST00000475470 MRC2Q9UBG0 1479 aa23.59■■□□□ 1.37
RPUSD3-215ENST00000475470 ABCA5Q8WWZ7 1642 aa23.57■■□□□ 1.36
RPUSD3-215ENST00000475470 GAPVD1Q14C86 1478 aa23.56■■□□□ 1.36
RPUSD3-215ENST00000475470 ZEB1P37275 1124 aaPredicted RBP23.54■■□□□ 1.36
RPUSD3-215ENST00000475470 TARBP1Q13395 1621 aaKnown RBP23.53■■□□□ 1.36
RPUSD3-215ENST00000475470 WDR62O43379 1518 aa23.42■■□□□ 1.34
RPUSD3-215ENST00000475470 CTTNBP2Q8WZ74 1663 aa23.42■■□□□ 1.34
RPUSD3-215ENST00000475470 ERCC6Q03468 1493 aa23.41■■□□□ 1.34
RPUSD3-215ENST00000475470 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.38■■□□□ 1.33
RPUSD3-215ENST00000475470 AQRO60306 1485 aaKnown RBP eCLIP23.36■■□□□ 1.333e-6■■□□□ 13.8
RPUSD3-215ENST00000475470 IFT140Q96RY7 1462 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms