RNA–Protein interactions for RNA: ENST00000475378.5

RNF220-212, Transcript of ring finger protein 220, humanhuman

TSL 3

Gene RNF220, Length 916 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220-212ENST00000475378 NISCHQ9Y2I1 1504 aa46.1■■■■■ 4.97
RNF220-212ENST00000475378 ABCC9O60706 1549 aa42.16■■■■■ 4.34
RNF220-212ENST00000475378 CCDC180Q9P1Z9 1646 aa41.69■■■■■ 4.26
RNF220-212ENST00000475378 DNAJC5BQ9UF47 199 aa40.11■■■■■ 4.01
RNF220-212ENST00000475378 RB1CC1Q8TDY2 1594 aa39.9■■■■□ 3.98
RNF220-212ENST00000475378 NACADO15069 1562 aa39.5■■■■□ 3.91
RNF220-212ENST00000475378 UNC13AQ9UPW8 1703 aa39.14■■■■□ 3.86
RNF220-212ENST00000475378 PABPN1Q86U42 306 aaKnown RBP eCLIP39.12■■■■□ 3.85
RNF220-212ENST00000475378 DCAF8L2P0C7V8 631 aa38.99■■■■□ 3.83
RNF220-212ENST00000475378 BICRAQ9NZM4 1560 aa38.84■■■■□ 3.81
RNF220-212ENST00000475378 MYO15BQ96JP2 1530 aa38.79■■■■□ 3.8
RNF220-212ENST00000475378 SHROOM4Q9ULL8 1493 aa38.21■■■■□ 3.71
RNF220-212ENST00000475378 CC2D2AQ9P2K1 1620 aa38.12■■■■□ 3.69
RNF220-212ENST00000475378 ZCCHC6Q5VYS8 1495 aaKnown RBP38.09■■■■□ 3.69
RNF220-212ENST00000475378 DCAF1Q9Y4B6 1507 aa38.07■■■■□ 3.69
RNF220-212ENST00000475378 CECR2Q9BXF3 1484 aa38.05■■■■□ 3.68
RNF220-212ENST00000475378 EIF4G1Q04637 1599 aaKnown RBP37.89■■■■□ 3.66
RNF220-212ENST00000475378 SCRIBQ14160 1630 aa37.88■■■■□ 3.65
RNF220-212ENST00000475378 DNAJC5Q9H3Z4 198 aa37.24■■■■□ 3.55
RNF220-212ENST00000475378 CUX2O14529 1486 aa36.62■■■■□ 3.45
RNF220-212ENST00000475378 NCAPD3P42695 1498 aa36.47■■■■□ 3.43
RNF220-212ENST00000475378 ERCC6Q03468 1493 aa36.41■■■■□ 3.42
RNF220-212ENST00000475378 ATAD2BQ9ULI0 1458 aa36.28■■■■□ 3.4
RNF220-212ENST00000475378 HMGXB3Q12766 1538 aa36.17■■■■□ 3.38
RNF220-212ENST00000475378 SMARCA2P51531 1590 aa36.13■■■■□ 3.37
RNF220-212ENST00000475378 SMARCA4P51532 1647 aa36.12■■■■□ 3.37
RNF220-212ENST00000475378 NESP48681 1621 aa36.08■■■■□ 3.37
RNF220-212ENST00000475378 THOC2Q8NI27 1593 aaKnown RBP35.89■■■■□ 3.34
RNF220-212ENST00000475378 BAZ1BQ9UIG0 1483 aaKnown RBP35.86■■■■□ 3.33
RNF220-212ENST00000475378 BAZ1AQ9NRL2 1556 aaPredicted RBP35.81■■■■□ 3.32
RNF220-212ENST00000475378 PEG3Q9GZU2 1588 aa35.8■■■■□ 3.32
RNF220-212ENST00000475378 LAMC3Q9Y6N6 1575 aa35.76■■■■□ 3.31
RNF220-212ENST00000475378 KIF21AQ7Z4S6 1674 aa35.66■■■■□ 3.3
RNF220-212ENST00000475378 MROH2BQ7Z745 1585 aa35.52■■■■□ 3.28
RNF220-212ENST00000475378 PDS5BQ9NTI5 1447 aa35.5■■■■□ 3.27
RNF220-212ENST00000475378 CADPSQ9ULU8 1353 aa35.3■■■■□ 3.24
RNF220-212ENST00000475378 TRIM41Q8WV44 630 aa35.28■■■■□ 3.24
RNF220-212ENST00000475378 MRC2Q9UBG0 1479 aa35.26■■■■□ 3.23
RNF220-212ENST00000475378 WDR62O43379 1518 aa35.24■■■■□ 3.23
RNF220-212ENST00000475378 WIZO95785 1651 aa35.08■■■■□ 3.21
RNF220-212ENST00000475378 CEP164Q9UPV0 1460 aa34.99■■■■□ 3.19
RNF220-212ENST00000475378 FANCD2Q9BXW9 1451 aa34.9■■■■□ 3.18
RNF220-212ENST00000475378 CFTRP13569 1480 aa34.8■■■■□ 3.16
RNF220-212ENST00000475378 OSCARQ8IYS5 282 aa34.76■■■■□ 3.16
RNF220-212ENST00000475378 URB2Q14146 1524 aaKnown RBP34.69■■■■□ 3.14
RNF220-212ENST00000475378 TOP2AP11388 1531 aaKnown RBP34.58■■■■□ 3.13
RNF220-212ENST00000475378 RSF1Q96T23 1441 aaPredicted RBP34.55■■■■□ 3.12
RNF220-212ENST00000475378 PRDM2Q13029 1718 aa34.52■■■■□ 3.12
RNF220-212ENST00000475378 RIMBP3CA6NJZ7 1639 aa34.49■■■■□ 3.11
RNF220-212ENST00000475378 RIMBP3BA6NNM3 1639 aa34.49■■■■□ 3.11
RNF220-212ENST00000475378 RIMBP3Q9UFD9 1639 aa34.49■■■■□ 3.11
RNF220-212ENST00000475378 ZNF608Q9ULD9 1512 aaPredicted RBP34.35■■■■□ 3.09
RNF220-212ENST00000475378 IFT140Q96RY7 1462 aa34.33■■■■□ 3.09
RNF220-212ENST00000475378 ARHGEF11O15085 1522 aa34.29■■■■□ 3.08
RNF220-212ENST00000475378 TOPBP1Q92547 1522 aa34.2■■■■□ 3.07
RNF220-212ENST00000475378 CCDC88BA6NC98 1476 aa34.18■■■■□ 3.06
RNF220-212ENST00000475378 EIF4G3O43432 1585 aaKnown RBP34.15■■■■□ 3.06
RNF220-212ENST00000475378 ABCC8Q09428 1581 aa34.06■■■■□ 3.04
RNF220-212ENST00000475378 CHD1O14646 1710 aa34.04■■■■□ 3.04
RNF220-212ENST00000475378 DNMBPQ6XZF7 1577 aa34.03■■■■□ 3.04
RNF220-212ENST00000475378 TARBP1Q13395 1621 aaKnown RBP34■■■■□ 3.03
RNF220-212ENST00000475378 CYB5RLQ6IPT4 315 aa33.99■■■■□ 3.03
RNF220-212ENST00000475378 AQRO60306 1485 aaKnown RBP eCLIP33.94■■■■□ 3.023e-7■■■■□ 24.8
RNF220-212ENST00000475378 ARAP1Q96P48 1450 aa33.92■■■■□ 3.02
RNF220-212ENST00000475378 POLA1P09884 1462 aaPredicted RBP33.82■■■■□ 3
RNF220-212ENST00000475378 TRHP20396 242 aaPredicted RBP33.75■■■□□ 2.99
RNF220-212ENST00000475378 FBLN2P98095 1184 aa33.73■■■□□ 2.99
RNF220-212ENST00000475378 RAD54L2Q9Y4B4 1467 aa33.69■■■□□ 2.98
RNF220-212ENST00000475378 CLASP1Q7Z460 1538 aa33.63■■■□□ 2.97
RNF220-212ENST00000475378 SOGA1O94964 1423 aa33.61■■■□□ 2.97
RNF220-212ENST00000475378 TDRD9Q8NDG6 1382 aaKnown RBP33.6■■■□□ 2.97
RNF220-212ENST00000475378 WDR97A6NE52 1622 aa33.59■■■□□ 2.97
RNF220-212ENST00000475378 SNAPC4Q5SXM2 1469 aa33.58■■■□□ 2.97
RNF220-212ENST00000475378 FGD5Q6ZNL6 1462 aa33.5■■■□□ 2.95
RNF220-212ENST00000475378 SYNJ1O43426 1573 aa33.5■■■□□ 2.95
RNF220-212ENST00000475378 MAGI1Q96QZ7 1491 aaPredicted RBP33.48■■■□□ 2.95
RNF220-212ENST00000475378 CHMP7Q8WUX9 453 aaPredicted RBP33.41■■■□□ 2.94
RNF220-212ENST00000475378 CUX1P39880 1505 aa33.41■■■□□ 2.94
RNF220-212ENST00000475378 GRIN2BQ13224 1484 aa33.39■■■□□ 2.94
RNF220-212ENST00000475378 SYNJ2O15056 1496 aa33.37■■■□□ 2.93
RNF220-212ENST00000475378 PBRM1Q86U86 1689 aa33.31■■■□□ 2.92
RNF220-212ENST00000475378 GAPVD1Q14C86 1478 aa33.24■■■□□ 2.91
RNF220-212ENST00000475378 AEBP2Q6ZN18 517 aaPredicted RBP33.19■■■□□ 2.9
RNF220-212ENST00000475378 ABCA5Q8WWZ7 1642 aa33.16■■■□□ 2.9
RNF220-212ENST00000475378 ABCA10Q8WWZ4 1543 aa33.12■■■□□ 2.89
RNF220-212ENST00000475378 ERCC6L2Q5T890 1561 aa33.05■■■□□ 2.88
RNF220-212ENST00000475378 GRIN2AQ12879 1464 aa32.99■■■□□ 2.87
RNF220-212ENST00000475378 CEP170Q5SW79 1584 aa32.94■■■□□ 2.86
RNF220-212ENST00000475378 ADAMTS12P58397 1594 aa32.93■■■□□ 2.86
RNF220-212ENST00000475378 NUP160Q12769 1436 aa32.92■■■□□ 2.86
RNF220-212ENST00000475378 SHROOM2Q13796 1616 aa32.88■■■□□ 2.85
RNF220-212ENST00000475378 KIF13AQ9H1H9 1805 aa32.81■■■□□ 2.84
RNF220-212ENST00000475378 WRNQ14191 1432 aaPredicted RBP eCLIP32.8■■■□□ 2.84
RNF220-212ENST00000475378 BIVM-ERCC5R4GMW8 1640 aa32.76■■■□□ 2.83
RNF220-212ENST00000475378 FHAD1B1AJZ9 1412 aa32.76■■■□□ 2.83
RNF220-212ENST00000475378 TOP2BQ02880 1626 aa32.72■■■□□ 2.83
RNF220-212ENST00000475378 ERICH3Q5RHP9 1530 aa32.68■■■□□ 2.82
RNF220-212ENST00000475378 PRG4Q92954 1404 aaPredicted RBP32.59■■■□□ 2.81
RNF220-212ENST00000475378 JPH4Q96JJ6 628 aa32.51■■■□□ 2.79
RNF220-212ENST00000475378 RUSC2Q8N2Y8 1516 aa32.48■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms