RNA–Protein interactions for RNA: ENST00000475307.1

GPM6B-208, Transcript of glycoprotein M6B, humanhuman

TSL 3

Gene GPM6B, Length 678 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPM6B-208ENST00000475307 NISCHQ9Y2I1 1504 aa28.17■■■□□ 2.1
GPM6B-208ENST00000475307 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
GPM6B-208ENST00000475307 ABCC9O60706 1549 aa24.91■■□□□ 1.58
GPM6B-208ENST00000475307 RB1CC1Q8TDY2 1594 aa23.81■■□□□ 1.4
GPM6B-208ENST00000475307 DCAF8L2P0C7V8 631 aa23.77■■□□□ 1.4
GPM6B-208ENST00000475307 NACADO15069 1562 aa23.71■■□□□ 1.39
GPM6B-208ENST00000475307 MYO15BQ96JP2 1530 aa23.45■■□□□ 1.34
GPM6B-208ENST00000475307 ZCCHC6Q5VYS8 1495 aaKnown RBP23.4■■□□□ 1.34
GPM6B-208ENST00000475307 PABPN1Q86U42 306 aaKnown RBP eCLIP23.27■■□□□ 1.32
GPM6B-208ENST00000475307 DCAF1Q9Y4B6 1507 aa23.26■■□□□ 1.31
GPM6B-208ENST00000475307 UNC13AQ9UPW8 1703 aa23.18■■□□□ 1.3
GPM6B-208ENST00000475307 DNAJC5BQ9UF47 199 aa23.11■■□□□ 1.29
GPM6B-208ENST00000475307 BICRAQ9NZM4 1560 aa23.07■■□□□ 1.28
GPM6B-208ENST00000475307 SCRIBQ14160 1630 aa22.94■■□□□ 1.26
GPM6B-208ENST00000475307 SHROOM4Q9ULL8 1493 aa22.8■■□□□ 1.24
GPM6B-208ENST00000475307 EIF4G1Q04637 1599 aaKnown RBP22.51■■□□□ 1.19
GPM6B-208ENST00000475307 CC2D2AQ9P2K1 1620 aa22.49■■□□□ 1.19
GPM6B-208ENST00000475307 CECR2Q9BXF3 1484 aa22.41■■□□□ 1.18
GPM6B-208ENST00000475307 SMARCA4P51532 1647 aa21.9■■□□□ 1.1
GPM6B-208ENST00000475307 NCAPD3P42695 1498 aa21.9■■□□□ 1.1
GPM6B-208ENST00000475307 ATAD2BQ9ULI0 1458 aa21.88■■□□□ 1.09
GPM6B-208ENST00000475307 BAZ1AQ9NRL2 1556 aaPredicted RBP21.86■■□□□ 1.09
GPM6B-208ENST00000475307 SMARCA2P51531 1590 aa21.82■■□□□ 1.08
GPM6B-208ENST00000475307 HMGXB3Q12766 1538 aa21.74■■□□□ 1.07
GPM6B-208ENST00000475307 MROH2BQ7Z745 1585 aa21.71■■□□□ 1.07
GPM6B-208ENST00000475307 BAZ1BQ9UIG0 1483 aaKnown RBP21.7■■□□□ 1.06
GPM6B-208ENST00000475307 PEG3Q9GZU2 1588 aa21.66■■□□□ 1.06
GPM6B-208ENST00000475307 ERCC6Q03468 1493 aa21.51■■□□□ 1.03
GPM6B-208ENST00000475307 NESP48681 1621 aa21.47■■□□□ 1.03
GPM6B-208ENST00000475307 WIZO95785 1651 aa21.45■■□□□ 1.02
GPM6B-208ENST00000475307 RSF1Q96T23 1441 aaPredicted RBP21.38■■□□□ 1.01
GPM6B-208ENST00000475307 LAMC3Q9Y6N6 1575 aa21.35■■□□□ 1.01
GPM6B-208ENST00000475307 CUX2O14529 1486 aa21.33■■□□□ 1.01
GPM6B-208ENST00000475307 CADPSQ9ULU8 1353 aa21.26■□□□□ 0.99
GPM6B-208ENST00000475307 PDS5BQ9NTI5 1447 aa21.25■□□□□ 0.99
GPM6B-208ENST00000475307 TOP2AP11388 1531 aaKnown RBP21.21■□□□□ 0.99
GPM6B-208ENST00000475307 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
GPM6B-208ENST00000475307 THOC2Q8NI27 1593 aaKnown RBP21.15■□□□□ 0.98
GPM6B-208ENST00000475307 CFTRP13569 1480 aa21.06■□□□□ 0.96
GPM6B-208ENST00000475307 MRC2Q9UBG0 1479 aa21.04■□□□□ 0.96
GPM6B-208ENST00000475307 DNAJC5Q9H3Z4 198 aa21.03■□□□□ 0.96
GPM6B-208ENST00000475307 CEP164Q9UPV0 1460 aa21.02■□□□□ 0.96
GPM6B-208ENST00000475307 FANCD2Q9BXW9 1451 aa21.01■□□□□ 0.95
GPM6B-208ENST00000475307 CCDC88BA6NC98 1476 aa20.98■□□□□ 0.95
GPM6B-208ENST00000475307 WDR62O43379 1518 aa20.95■□□□□ 0.94
GPM6B-208ENST00000475307 URB2Q14146 1524 aaKnown RBP20.81■□□□□ 0.92
GPM6B-208ENST00000475307 PRDM2Q13029 1718 aa20.79■□□□□ 0.92
GPM6B-208ENST00000475307 SUPT5HO00267 1087 aaKnown RBP20.72■□□□□ 0.91
GPM6B-208ENST00000475307 TOPBP1Q92547 1522 aa20.64■□□□□ 0.9
GPM6B-208ENST00000475307 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
GPM6B-208ENST00000475307 IFT140Q96RY7 1462 aa20.58■□□□□ 0.89
GPM6B-208ENST00000475307 DNMBPQ6XZF7 1577 aa20.58■□□□□ 0.88
GPM6B-208ENST00000475307 ZNF608Q9ULD9 1512 aaPredicted RBP20.52■□□□□ 0.87
GPM6B-208ENST00000475307 OSCARQ8IYS5 282 aa20.46■□□□□ 0.87
GPM6B-208ENST00000475307 POLA1P09884 1462 aaPredicted RBP20.45■□□□□ 0.86
GPM6B-208ENST00000475307 TARBP1Q13395 1621 aaKnown RBP20.4■□□□□ 0.86
GPM6B-208ENST00000475307 EIF4G3O43432 1585 aaKnown RBP20.39■□□□□ 0.85
GPM6B-208ENST00000475307 SOGA1O94964 1423 aa20.39■□□□□ 0.85
GPM6B-208ENST00000475307 AQRO60306 1485 aaKnown RBP eCLIP20.38■□□□□ 0.85
GPM6B-208ENST00000475307 RAD54L2Q9Y4B4 1467 aa20.38■□□□□ 0.85
GPM6B-208ENST00000475307 CUX1P39880 1505 aa20.37■□□□□ 0.85
GPM6B-208ENST00000475307 FGD5Q6ZNL6 1462 aa20.37■□□□□ 0.85
GPM6B-208ENST00000475307 TDRD9Q8NDG6 1382 aaKnown RBP20.32■□□□□ 0.84
GPM6B-208ENST00000475307 TRIM41Q8WV44 630 aa20.28■□□□□ 0.84
GPM6B-208ENST00000475307 FBLN2P98095 1184 aa20.25■□□□□ 0.83
GPM6B-208ENST00000475307 WDR97A6NE52 1622 aa20.22■□□□□ 0.83
GPM6B-208ENST00000475307 WRNQ14191 1432 aaPredicted RBP eCLIP20.18■□□□□ 0.82
GPM6B-208ENST00000475307 SNAPC4Q5SXM2 1469 aa20.18■□□□□ 0.82
GPM6B-208ENST00000475307 GRIN2BQ13224 1484 aa20.17■□□□□ 0.82
GPM6B-208ENST00000475307 CHD1O14646 1710 aa20.16■□□□□ 0.82
GPM6B-208ENST00000475307 ABCA10Q8WWZ4 1543 aa20.13■□□□□ 0.81
GPM6B-208ENST00000475307 GAPVD1Q14C86 1478 aa20.13■□□□□ 0.81
GPM6B-208ENST00000475307 CHMP7Q8WUX9 453 aaPredicted RBP20.13■□□□□ 0.81
GPM6B-208ENST00000475307 MAGI1Q96QZ7 1491 aaPredicted RBP20.12■□□□□ 0.81
GPM6B-208ENST00000475307 TOP2BQ02880 1626 aa20.12■□□□□ 0.81
GPM6B-208ENST00000475307 SYNJ1O43426 1573 aa20.11■□□□□ 0.81
GPM6B-208ENST00000475307 BIVM-ERCC5R4GMW8 1640 aa20.1■□□□□ 0.81
GPM6B-208ENST00000475307 RIMBP3CA6NJZ7 1639 aa20.09■□□□□ 0.81
GPM6B-208ENST00000475307 RIMBP3BA6NNM3 1639 aa20.09■□□□□ 0.81
GPM6B-208ENST00000475307 RIMBP3Q9UFD9 1639 aa20.09■□□□□ 0.81
GPM6B-208ENST00000475307 ARHGEF11O15085 1522 aa20.08■□□□□ 0.81
GPM6B-208ENST00000475307 SYNJ2O15056 1496 aa20.06■□□□□ 0.8
GPM6B-208ENST00000475307 ABCA5Q8WWZ7 1642 aa20.06■□□□□ 0.8
GPM6B-208ENST00000475307 PBRM1Q86U86 1689 aa20.05■□□□□ 0.8
GPM6B-208ENST00000475307 CYB5RLQ6IPT4 315 aa19.97■□□□□ 0.79
GPM6B-208ENST00000475307 CLASP1Q7Z460 1538 aa19.96■□□□□ 0.79
GPM6B-208ENST00000475307 GRIN2AQ12879 1464 aa19.9■□□□□ 0.78
GPM6B-208ENST00000475307 ARAP1Q96P48 1450 aa19.9■□□□□ 0.78
GPM6B-208ENST00000475307 ADAMTS12P58397 1594 aa19.9■□□□□ 0.78
GPM6B-208ENST00000475307 FHAD1B1AJZ9 1412 aa19.89■□□□□ 0.77
GPM6B-208ENST00000475307 ERICH3Q5RHP9 1530 aa19.89■□□□□ 0.77
GPM6B-208ENST00000475307 NUP160Q12769 1436 aa19.81■□□□□ 0.76
GPM6B-208ENST00000475307 CEP170Q5SW79 1584 aa19.78■□□□□ 0.76
GPM6B-208ENST00000475307 KIF27Q86VH2 1401 aa19.78■□□□□ 0.76
GPM6B-208ENST00000475307 IGF1RP08069 1367 aa19.72■□□□□ 0.75
GPM6B-208ENST00000475307 TRHP20396 242 aaPredicted RBP19.69■□□□□ 0.74
GPM6B-208ENST00000475307 ERCC6L2Q5T890 1561 aa19.68■□□□□ 0.74
GPM6B-208ENST00000475307 SHROOM2Q13796 1616 aa19.65■□□□□ 0.74
GPM6B-208ENST00000475307 JPH4Q96JJ6 628 aa19.65■□□□□ 0.74
GPM6B-208ENST00000475307 CUL7Q14999 1698 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms