RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NISCHQ9Y2I1 1504 aa35.21■■■■□ 3.23
UPF3A-204ENST00000475218 CCDC180Q9P1Z9 1646 aa31.45■■■□□ 2.63
UPF3A-204ENST00000475218 ABCC9O60706 1549 aa31.17■■■□□ 2.58
UPF3A-204ENST00000475218 RB1CC1Q8TDY2 1594 aa29.77■■■□□ 2.36
UPF3A-204ENST00000475218 NACADO15069 1562 aa29.64■■■□□ 2.34
UPF3A-204ENST00000475218 DCAF8L2P0C7V8 631 aa29.47■■■□□ 2.31
UPF3A-204ENST00000475218 MYO15BQ96JP2 1530 aa29.36■■■□□ 2.29
UPF3A-204ENST00000475218 ZCCHC6Q5VYS8 1495 aaKnown RBP29.26■■■□□ 2.27
UPF3A-204ENST00000475218 UNC13AQ9UPW8 1703 aa29.21■■■□□ 2.27
UPF3A-204ENST00000475218 DCAF1Q9Y4B6 1507 aa29.1■■■□□ 2.25
UPF3A-204ENST00000475218 PABPN1Q86U42 306 aaKnown RBP eCLIP29.07■■■□□ 2.24
UPF3A-204ENST00000475218 DNAJC5BQ9UF47 199 aa29.07■■■□□ 2.24
UPF3A-204ENST00000475218 BICRAQ9NZM4 1560 aa29.01■■■□□ 2.23
UPF3A-204ENST00000475218 SCRIBQ14160 1630 aa28.69■■■□□ 2.18
UPF3A-204ENST00000475218 SHROOM4Q9ULL8 1493 aa28.52■■■□□ 2.16
UPF3A-204ENST00000475218 EIF4G1Q04637 1599 aaKnown RBP28.21■■■□□ 2.11
UPF3A-204ENST00000475218 CC2D2AQ9P2K1 1620 aa28.19■■■□□ 2.1
UPF3A-204ENST00000475218 CECR2Q9BXF3 1484 aa28.03■■■□□ 2.08
UPF3A-204ENST00000475218 SMARCA4P51532 1647 aa27.41■■□□□ 1.98
UPF3A-204ENST00000475218 NCAPD3P42695 1498 aa27.39■■□□□ 1.98
UPF3A-204ENST00000475218 ATAD2BQ9ULI0 1458 aa27.36■■□□□ 1.97
UPF3A-204ENST00000475218 BAZ1AQ9NRL2 1556 aaPredicted RBP27.27■■□□□ 1.96
UPF3A-204ENST00000475218 SMARCA2P51531 1590 aa27.25■■□□□ 1.95
UPF3A-204ENST00000475218 HMGXB3Q12766 1538 aa27.21■■□□□ 1.95
UPF3A-204ENST00000475218 MROH2BQ7Z745 1585 aa27.17■■□□□ 1.94
UPF3A-204ENST00000475218 PEG3Q9GZU2 1588 aa27.16■■□□□ 1.94
UPF3A-204ENST00000475218 BAZ1BQ9UIG0 1483 aaKnown RBP27.06■■□□□ 1.92
UPF3A-204ENST00000475218 NESP48681 1621 aa26.91■■□□□ 1.9
UPF3A-204ENST00000475218 WIZO95785 1651 aa26.85■■□□□ 1.89
UPF3A-204ENST00000475218 ERCC6Q03468 1493 aa26.82■■□□□ 1.88
UPF3A-204ENST00000475218 CUX2O14529 1486 aa26.72■■□□□ 1.87
UPF3A-204ENST00000475218 LAMC3Q9Y6N6 1575 aa26.71■■□□□ 1.87
UPF3A-204ENST00000475218 RSF1Q96T23 1441 aaPredicted RBP26.69■■□□□ 1.86
UPF3A-204ENST00000475218 THOC2Q8NI27 1593 aaKnown RBP26.58■■□□□ 1.85
UPF3A-204ENST00000475218 KIF21AQ7Z4S6 1674 aa26.56■■□□□ 1.84
UPF3A-204ENST00000475218 CADPSQ9ULU8 1353 aa26.55■■□□□ 1.84
UPF3A-204ENST00000475218 TOP2AP11388 1531 aaKnown RBP26.5■■□□□ 1.83
UPF3A-204ENST00000475218 PDS5BQ9NTI5 1447 aa26.49■■□□□ 1.83
UPF3A-204ENST00000475218 DNAJC5Q9H3Z4 198 aa26.39■■□□□ 1.82
UPF3A-204ENST00000475218 CFTRP13569 1480 aa26.34■■□□□ 1.81
UPF3A-204ENST00000475218 MRC2Q9UBG0 1479 aa26.3■■□□□ 1.8
UPF3A-204ENST00000475218 WDR62O43379 1518 aa26.26■■□□□ 1.79
UPF3A-204ENST00000475218 FANCD2Q9BXW9 1451 aa26.25■■□□□ 1.79
UPF3A-204ENST00000475218 CEP164Q9UPV0 1460 aa26.23■■□□□ 1.79
UPF3A-204ENST00000475218 CCDC88BA6NC98 1476 aa26.2■■□□□ 1.79
UPF3A-204ENST00000475218 PRDM2Q13029 1718 aa26.09■■□□□ 1.77
UPF3A-204ENST00000475218 URB2Q14146 1524 aaKnown RBP26.07■■□□□ 1.76
UPF3A-204ENST00000475218 TOPBP1Q92547 1522 aa25.81■■□□□ 1.72
UPF3A-204ENST00000475218 DNMBPQ6XZF7 1577 aa25.73■■□□□ 1.71
UPF3A-204ENST00000475218 ZNF608Q9ULD9 1512 aaPredicted RBP25.7■■□□□ 1.71
UPF3A-204ENST00000475218 IFT140Q96RY7 1462 aa25.7■■□□□ 1.7
UPF3A-204ENST00000475218 ABCC8Q09428 1581 aa25.7■■□□□ 1.7
UPF3A-204ENST00000475218 SUPT5HO00267 1087 aaKnown RBP25.62■■□□□ 1.69
UPF3A-204ENST00000475218 TARBP1Q13395 1621 aaKnown RBP25.6■■□□□ 1.69
UPF3A-204ENST00000475218 POLA1P09884 1462 aaPredicted RBP25.57■■□□□ 1.68
UPF3A-204ENST00000475218 EIF4G3O43432 1585 aaKnown RBP25.55■■□□□ 1.68
UPF3A-204ENST00000475218 CUX1P39880 1505 aa25.51■■□□□ 1.67
UPF3A-204ENST00000475218 OSCARQ8IYS5 282 aa25.5■■□□□ 1.67
UPF3A-204ENST00000475218 AQRO60306 1485 aaKnown RBP eCLIP25.48■■□□□ 1.673e-6■□□□□ 10.3
UPF3A-204ENST00000475218 RAD54L2Q9Y4B4 1467 aa25.48■■□□□ 1.67
UPF3A-204ENST00000475218 FGD5Q6ZNL6 1462 aa25.44■■□□□ 1.66
UPF3A-204ENST00000475218 SOGA1O94964 1423 aa25.41■■□□□ 1.66
UPF3A-204ENST00000475218 TDRD9Q8NDG6 1382 aaKnown RBP25.35■■□□□ 1.65
UPF3A-204ENST00000475218 CHD1O14646 1710 aa25.31■■□□□ 1.64
UPF3A-204ENST00000475218 TRIM41Q8WV44 630 aa25.3■■□□□ 1.64
UPF3A-204ENST00000475218 WDR97A6NE52 1622 aa25.29■■□□□ 1.64
UPF3A-204ENST00000475218 RIMBP3CA6NJZ7 1639 aa25.23■■□□□ 1.63
UPF3A-204ENST00000475218 RIMBP3BA6NNM3 1639 aa25.23■■□□□ 1.63
UPF3A-204ENST00000475218 RIMBP3Q9UFD9 1639 aa25.23■■□□□ 1.63
UPF3A-204ENST00000475218 SNAPC4Q5SXM2 1469 aa25.22■■□□□ 1.63
UPF3A-204ENST00000475218 ARHGEF11O15085 1522 aa25.17■■□□□ 1.62
UPF3A-204ENST00000475218 ABCA10Q8WWZ4 1543 aa25.17■■□□□ 1.62
UPF3A-204ENST00000475218 GRIN2BQ13224 1484 aa25.16■■□□□ 1.62
UPF3A-204ENST00000475218 SYNJ1O43426 1573 aa25.16■■□□□ 1.62
UPF3A-204ENST00000475218 BIVM-ERCC5R4GMW8 1640 aa25.15■■□□□ 1.62
UPF3A-204ENST00000475218 TOP2BQ02880 1626 aa25.14■■□□□ 1.62
UPF3A-204ENST00000475218 FBLN2P98095 1184 aa25.14■■□□□ 1.62
UPF3A-204ENST00000475218 ABCA5Q8WWZ7 1642 aa25.14■■□□□ 1.61
UPF3A-204ENST00000475218 MAGI1Q96QZ7 1491 aaPredicted RBP25.13■■□□□ 1.61
UPF3A-204ENST00000475218 GAPVD1Q14C86 1478 aa25.12■■□□□ 1.61
UPF3A-204ENST00000475218 PBRM1Q86U86 1689 aa25.12■■□□□ 1.61
UPF3A-204ENST00000475218 WRNQ14191 1432 aaPredicted RBP eCLIP25.12■■□□□ 1.61
UPF3A-204ENST00000475218 SYNJ2O15056 1496 aa25.05■■□□□ 1.6
UPF3A-204ENST00000475218 CLASP1Q7Z460 1538 aa25.05■■□□□ 1.6
UPF3A-204ENST00000475218 CHMP7Q8WUX9 453 aaPredicted RBP25.01■■□□□ 1.59
UPF3A-204ENST00000475218 ARAP1Q96P48 1450 aa24.97■■□□□ 1.59
UPF3A-204ENST00000475218 ADAMTS12P58397 1594 aa24.91■■□□□ 1.58
UPF3A-204ENST00000475218 CYB5RLQ6IPT4 315 aa24.9■■□□□ 1.58
UPF3A-204ENST00000475218 GRIN2AQ12879 1464 aa24.86■■□□□ 1.57
UPF3A-204ENST00000475218 ERICH3Q5RHP9 1530 aa24.84■■□□□ 1.57
UPF3A-204ENST00000475218 FHAD1B1AJZ9 1412 aa24.8■■□□□ 1.56
UPF3A-204ENST00000475218 CEP170Q5SW79 1584 aa24.8■■□□□ 1.56
UPF3A-204ENST00000475218 NUP160Q12769 1436 aa24.8■■□□□ 1.56
UPF3A-204ENST00000475218 ERCC6L2Q5T890 1561 aa24.72■■□□□ 1.55
UPF3A-204ENST00000475218 SHROOM2Q13796 1616 aa24.67■■□□□ 1.54
UPF3A-204ENST00000475218 IGF1RP08069 1367 aa24.61■■□□□ 1.53
UPF3A-204ENST00000475218 KIF27Q86VH2 1401 aa24.59■■□□□ 1.53
UPF3A-204ENST00000475218 RUSC2Q8N2Y8 1516 aa24.56■■□□□ 1.52
UPF3A-204ENST00000475218 CUL7Q14999 1698 aa24.52■■□□□ 1.52
UPF3A-204ENST00000475218 PRG4Q92954 1404 aaPredicted RBP24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms