RNA–Protein interactions for RNA: ENST00000475184.5

ITGB1-211, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-211ENST00000475184 NISCHQ9Y2I1 1504 aa40.58■■■■■ 4.09
ITGB1-211ENST00000475184 ABCC9O60706 1549 aa37■■■■□ 3.51
ITGB1-211ENST00000475184 CCDC180Q9P1Z9 1646 aa36.69■■■■□ 3.46
ITGB1-211ENST00000475184 RB1CC1Q8TDY2 1594 aa35.08■■■■□ 3.21
ITGB1-211ENST00000475184 DNAJC5BQ9UF47 199 aa35.02■■■■□ 3.2
ITGB1-211ENST00000475184 NACADO15069 1562 aa34.73■■■■□ 3.15
ITGB1-211ENST00000475184 UNC13AQ9UPW8 1703 aa34.38■■■■□ 3.09
ITGB1-211ENST00000475184 DCAF8L2P0C7V8 631 aa34.35■■■■□ 3.09
ITGB1-211ENST00000475184 PABPN1Q86U42 306 aaKnown RBP eCLIP34.33■■■■□ 3.09
ITGB1-211ENST00000475184 MYO15BQ96JP2 1530 aa34.1■■■■□ 3.05
ITGB1-211ENST00000475184 BICRAQ9NZM4 1560 aa34.07■■■■□ 3.05
ITGB1-211ENST00000475184 SHROOM4Q9ULL8 1493 aa33.57■■■□□ 2.97
ITGB1-211ENST00000475184 ZCCHC6Q5VYS8 1495 aaKnown RBP33.56■■■□□ 2.96
ITGB1-211ENST00000475184 DCAF1Q9Y4B6 1507 aa33.51■■■□□ 2.95
ITGB1-211ENST00000475184 CC2D2AQ9P2K1 1620 aa33.45■■■□□ 2.95
ITGB1-211ENST00000475184 CECR2Q9BXF3 1484 aa33.37■■■□□ 2.93
ITGB1-211ENST00000475184 SCRIBQ14160 1630 aa33.36■■■□□ 2.93
ITGB1-211ENST00000475184 EIF4G1Q04637 1599 aaKnown RBP33.26■■■□□ 2.92
ITGB1-211ENST00000475184 DNAJC5Q9H3Z4 198 aa32.48■■■□□ 2.79
ITGB1-211ENST00000475184 CUX2O14529 1486 aa32.08■■■□□ 2.73
ITGB1-211ENST00000475184 NCAPD3P42695 1498 aa32.02■■■□□ 2.72
ITGB1-211ENST00000475184 ERCC6Q03468 1493 aa31.99■■■□□ 2.71
ITGB1-211ENST00000475184 ATAD2BQ9ULI0 1458 aa31.87■■■□□ 2.69
ITGB1-211ENST00000475184 SMARCA2P51531 1590 aa31.8■■■□□ 2.68
ITGB1-211ENST00000475184 HMGXB3Q12766 1538 aa31.8■■■□□ 2.68
ITGB1-211ENST00000475184 SMARCA4P51532 1647 aa31.79■■■□□ 2.68
ITGB1-211ENST00000475184 NESP48681 1621 aa31.67■■■□□ 2.66
ITGB1-211ENST00000475184 BAZ1BQ9UIG0 1483 aaKnown RBP31.56■■■□□ 2.64
ITGB1-211ENST00000475184 BAZ1AQ9NRL2 1556 aaPredicted RBP31.55■■■□□ 2.64
ITGB1-211ENST00000475184 THOC2Q8NI27 1593 aaKnown RBP31.49■■■□□ 2.63
ITGB1-211ENST00000475184 PEG3Q9GZU2 1588 aa31.47■■■□□ 2.63
ITGB1-211ENST00000475184 LAMC3Q9Y6N6 1575 aa31.43■■■□□ 2.62
ITGB1-211ENST00000475184 KIF21AQ7Z4S6 1674 aa31.34■■■□□ 2.61
ITGB1-211ENST00000475184 MROH2BQ7Z745 1585 aa31.26■■■□□ 2.6
ITGB1-211ENST00000475184 PDS5BQ9NTI5 1447 aa31.21■■■□□ 2.59
ITGB1-211ENST00000475184 CADPSQ9ULU8 1353 aa31.02■■■□□ 2.56
ITGB1-211ENST00000475184 MRC2Q9UBG0 1479 aa30.99■■■□□ 2.55
ITGB1-211ENST00000475184 WDR62O43379 1518 aa30.94■■■□□ 2.54
ITGB1-211ENST00000475184 WIZO95785 1651 aa30.9■■■□□ 2.54
ITGB1-211ENST00000475184 TRIM41Q8WV44 630 aa30.89■■■□□ 2.54
ITGB1-211ENST00000475184 CEP164Q9UPV0 1460 aa30.78■■■□□ 2.52
ITGB1-211ENST00000475184 FANCD2Q9BXW9 1451 aa30.7■■■□□ 2.5
ITGB1-211ENST00000475184 CFTRP13569 1480 aa30.6■■■□□ 2.49
ITGB1-211ENST00000475184 OSCARQ8IYS5 282 aa30.49■■■□□ 2.47
ITGB1-211ENST00000475184 TOP2AP11388 1531 aaKnown RBP30.47■■■□□ 2.47
ITGB1-211ENST00000475184 URB2Q14146 1524 aaKnown RBP30.47■■■□□ 2.47
ITGB1-211ENST00000475184 RSF1Q96T23 1441 aaPredicted RBP30.44■■■□□ 2.46
ITGB1-211ENST00000475184 PRDM2Q13029 1718 aa30.42■■■□□ 2.46
ITGB1-211ENST00000475184 RIMBP3CA6NJZ7 1639 aa30.23■■■□□ 2.43
ITGB1-211ENST00000475184 RIMBP3BA6NNM3 1639 aa30.23■■■□□ 2.43
ITGB1-211ENST00000475184 RIMBP3Q9UFD9 1639 aa30.23■■■□□ 2.43
ITGB1-211ENST00000475184 IFT140Q96RY7 1462 aa30.17■■■□□ 2.42
ITGB1-211ENST00000475184 ZNF608Q9ULD9 1512 aaPredicted RBP30.17■■■□□ 2.42
ITGB1-211ENST00000475184 CCDC88BA6NC98 1476 aa30.09■■■□□ 2.41
ITGB1-211ENST00000475184 TOPBP1Q92547 1522 aa30.07■■■□□ 2.4
ITGB1-211ENST00000475184 ARHGEF11O15085 1522 aa30.06■■■□□ 2.4
ITGB1-211ENST00000475184 EIF4G3O43432 1585 aaKnown RBP30.03■■■□□ 2.4
ITGB1-211ENST00000475184 ABCC8Q09428 1581 aa29.98■■■□□ 2.39
ITGB1-211ENST00000475184 DNMBPQ6XZF7 1577 aa29.95■■■□□ 2.39
ITGB1-211ENST00000475184 CHD1O14646 1710 aa29.93■■■□□ 2.38
ITGB1-211ENST00000475184 TARBP1Q13395 1621 aaKnown RBP29.88■■■□□ 2.37
ITGB1-211ENST00000475184 AQRO60306 1485 aaKnown RBP eCLIP29.81■■■□□ 2.36
ITGB1-211ENST00000475184 CYB5RLQ6IPT4 315 aa29.8■■■□□ 2.36
ITGB1-211ENST00000475184 POLA1P09884 1462 aaPredicted RBP29.74■■■□□ 2.35
ITGB1-211ENST00000475184 ARAP1Q96P48 1450 aa29.74■■■□□ 2.35
ITGB1-211ENST00000475184 FBLN2P98095 1184 aa29.68■■■□□ 2.34
ITGB1-211ENST00000475184 RAD54L2Q9Y4B4 1467 aa29.61■■■□□ 2.33
ITGB1-211ENST00000475184 TRHP20396 242 aaPredicted RBP29.61■■■□□ 2.33
ITGB1-211ENST00000475184 SOGA1O94964 1423 aa29.56■■■□□ 2.32
ITGB1-211ENST00000475184 TDRD9Q8NDG6 1382 aaKnown RBP29.55■■■□□ 2.32
ITGB1-211ENST00000475184 WDR97A6NE52 1622 aa29.55■■■□□ 2.32
ITGB1-211ENST00000475184 SNAPC4Q5SXM2 1469 aa29.53■■■□□ 2.32
ITGB1-211ENST00000475184 CLASP1Q7Z460 1538 aa29.51■■■□□ 2.32
ITGB1-211ENST00000475184 FGD5Q6ZNL6 1462 aa29.49■■■□□ 2.31
ITGB1-211ENST00000475184 SYNJ1O43426 1573 aa29.46■■■□□ 2.31
ITGB1-211ENST00000475184 MAGI1Q96QZ7 1491 aaPredicted RBP29.44■■■□□ 2.3
ITGB1-211ENST00000475184 CUX1P39880 1505 aa29.41■■■□□ 2.3
ITGB1-211ENST00000475184 CHMP7Q8WUX9 453 aaPredicted RBP29.4■■■□□ 2.3
ITGB1-211ENST00000475184 GRIN2BQ13224 1484 aa29.38■■■□□ 2.29
ITGB1-211ENST00000475184 SYNJ2O15056 1496 aa29.34■■■□□ 2.29
ITGB1-211ENST00000475184 PBRM1Q86U86 1689 aa29.33■■■□□ 2.29
ITGB1-211ENST00000475184 GAPVD1Q14C86 1478 aa29.23■■■□□ 2.27
ITGB1-211ENST00000475184 ABCA5Q8WWZ7 1642 aa29.17■■■□□ 2.26
ITGB1-211ENST00000475184 ABCA10Q8WWZ4 1543 aa29.14■■■□□ 2.25
ITGB1-211ENST00000475184 AEBP2Q6ZN18 517 aaPredicted RBP29.06■■■□□ 2.24
ITGB1-211ENST00000475184 GRIN2AQ12879 1464 aa29.02■■■□□ 2.24
ITGB1-211ENST00000475184 ERCC6L2Q5T890 1561 aa29.01■■■□□ 2.24
ITGB1-211ENST00000475184 ADAMTS12P58397 1594 aa28.98■■■□□ 2.23
ITGB1-211ENST00000475184 CEP170Q5SW79 1584 aa28.95■■■□□ 2.22
ITGB1-211ENST00000475184 NUP160Q12769 1436 aa28.93■■■□□ 2.22
ITGB1-211ENST00000475184 WRNQ14191 1432 aaPredicted RBP eCLIP28.92■■■□□ 2.22
ITGB1-211ENST00000475184 SHROOM2Q13796 1616 aa28.9■■■□□ 2.22
ITGB1-211ENST00000475184 BIVM-ERCC5R4GMW8 1640 aa28.87■■■□□ 2.21
ITGB1-211ENST00000475184 TOP2BQ02880 1626 aa28.85■■■□□ 2.21
ITGB1-211ENST00000475184 FHAD1B1AJZ9 1412 aa28.83■■■□□ 2.21
ITGB1-211ENST00000475184 KIF13AQ9H1H9 1805 aa28.79■■■□□ 2.2
ITGB1-211ENST00000475184 ERICH3Q5RHP9 1530 aa28.78■■■□□ 2.2
ITGB1-211ENST00000475184 SUPT5HO00267 1087 aaKnown RBP28.74■■■□□ 2.19
ITGB1-211ENST00000475184 PRG4Q92954 1404 aaPredicted RBP28.66■■■□□ 2.18
ITGB1-211ENST00000475184 RUSC2Q8N2Y8 1516 aa28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms