RNA–Protein interactions for RNA: ENST00000474996.6

COL2A1-205, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 3

Gene COL2A1, Length 760 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-205ENST00000474996 NISCHQ9Y2I1 1504 aa36.1■■■■□ 3.37
COL2A1-205ENST00000474996 ABCC9O60706 1549 aa32.47■■■□□ 2.79
COL2A1-205ENST00000474996 CCDC180Q9P1Z9 1646 aa32.42■■■□□ 2.78
COL2A1-205ENST00000474996 RB1CC1Q8TDY2 1594 aa30.88■■■□□ 2.53
COL2A1-205ENST00000474996 NACADO15069 1562 aa30.64■■■□□ 2.5
COL2A1-205ENST00000474996 DCAF8L2P0C7V8 631 aa30.51■■■□□ 2.47
COL2A1-205ENST00000474996 DNAJC5BQ9UF47 199 aa30.48■■■□□ 2.47
COL2A1-205ENST00000474996 UNC13AQ9UPW8 1703 aa30.22■■■□□ 2.43
COL2A1-205ENST00000474996 PABPN1Q86U42 306 aaKnown RBP eCLIP30.22■■■□□ 2.43
COL2A1-205ENST00000474996 MYO15BQ96JP2 1530 aa30.19■■■□□ 2.42
COL2A1-205ENST00000474996 BICRAQ9NZM4 1560 aa29.98■■■□□ 2.39
COL2A1-205ENST00000474996 ZCCHC6Q5VYS8 1495 aaKnown RBP29.92■■■□□ 2.38
COL2A1-205ENST00000474996 DCAF1Q9Y4B6 1507 aa29.8■■■□□ 2.36
COL2A1-205ENST00000474996 SCRIBQ14160 1630 aa29.56■■■□□ 2.32
COL2A1-205ENST00000474996 SHROOM4Q9ULL8 1493 aa29.54■■■□□ 2.32
COL2A1-205ENST00000474996 CC2D2AQ9P2K1 1620 aa29.33■■■□□ 2.29
COL2A1-205ENST00000474996 EIF4G1Q04637 1599 aaKnown RBP29.25■■■□□ 2.27
COL2A1-205ENST00000474996 CECR2Q9BXF3 1484 aa29.23■■■□□ 2.27
COL2A1-205ENST00000474996 NCAPD3P42695 1498 aa28.28■■■□□ 2.12
COL2A1-205ENST00000474996 ATAD2BQ9ULI0 1458 aa28.21■■■□□ 2.11
COL2A1-205ENST00000474996 SMARCA4P51532 1647 aa28.18■■■□□ 2.1
COL2A1-205ENST00000474996 SMARCA2P51531 1590 aa28.12■■■□□ 2.09
COL2A1-205ENST00000474996 HMGXB3Q12766 1538 aa28.08■■■□□ 2.08
COL2A1-205ENST00000474996 BAZ1AQ9NRL2 1556 aaPredicted RBP28.03■■■□□ 2.08
COL2A1-205ENST00000474996 ERCC6Q03468 1493 aa28.02■■■□□ 2.08
COL2A1-205ENST00000474996 DNAJC5Q9H3Z4 198 aa27.99■■■□□ 2.07
COL2A1-205ENST00000474996 CUX2O14529 1486 aa27.96■■■□□ 2.07
COL2A1-205ENST00000474996 BAZ1BQ9UIG0 1483 aaKnown RBP27.94■■■□□ 2.06
COL2A1-205ENST00000474996 PEG3Q9GZU2 1588 aa27.9■■■□□ 2.06
COL2A1-205ENST00000474996 NESP48681 1621 aa27.89■■■□□ 2.05
COL2A1-205ENST00000474996 MROH2BQ7Z745 1585 aa27.83■■■□□ 2.05
COL2A1-205ENST00000474996 LAMC3Q9Y6N6 1575 aa27.67■■■□□ 2.02
COL2A1-205ENST00000474996 THOC2Q8NI27 1593 aaKnown RBP27.6■■■□□ 2.01
COL2A1-205ENST00000474996 KIF21AQ7Z4S6 1674 aa27.54■■■□□ 2
COL2A1-205ENST00000474996 WIZO95785 1651 aa27.52■■■□□ 2
COL2A1-205ENST00000474996 PDS5BQ9NTI5 1447 aa27.5■■□□□ 1.99
COL2A1-205ENST00000474996 CADPSQ9ULU8 1353 aa27.43■■□□□ 1.98
COL2A1-205ENST00000474996 MRC2Q9UBG0 1479 aa27.27■■□□□ 1.96
COL2A1-205ENST00000474996 RSF1Q96T23 1441 aaPredicted RBP27.23■■□□□ 1.95
COL2A1-205ENST00000474996 WDR62O43379 1518 aa27.21■■□□□ 1.95
COL2A1-205ENST00000474996 CEP164Q9UPV0 1460 aa27.16■■□□□ 1.94
COL2A1-205ENST00000474996 TOP2AP11388 1531 aaKnown RBP27.14■■□□□ 1.94
COL2A1-205ENST00000474996 FANCD2Q9BXW9 1451 aa27.13■■□□□ 1.93
COL2A1-205ENST00000474996 CFTRP13569 1480 aa27.11■■□□□ 1.93
COL2A1-205ENST00000474996 URB2Q14146 1524 aaKnown RBP26.91■■□□□ 1.9
COL2A1-205ENST00000474996 PRDM2Q13029 1718 aa26.87■■□□□ 1.89
COL2A1-205ENST00000474996 CCDC88BA6NC98 1476 aa26.84■■□□□ 1.89
COL2A1-205ENST00000474996 TRIM41Q8WV44 630 aa26.78■■□□□ 1.88
COL2A1-205ENST00000474996 OSCARQ8IYS5 282 aa26.68■■□□□ 1.86
COL2A1-205ENST00000474996 TOPBP1Q92547 1522 aa26.62■■□□□ 1.85
COL2A1-205ENST00000474996 IFT140Q96RY7 1462 aa26.62■■□□□ 1.85
COL2A1-205ENST00000474996 ZNF608Q9ULD9 1512 aaPredicted RBP26.6■■□□□ 1.85
COL2A1-205ENST00000474996 ABCC8Q09428 1581 aa26.53■■□□□ 1.84
COL2A1-205ENST00000474996 DNMBPQ6XZF7 1577 aa26.51■■□□□ 1.83
COL2A1-205ENST00000474996 EIF4G3O43432 1585 aaKnown RBP26.46■■□□□ 1.83
COL2A1-205ENST00000474996 TARBP1Q13395 1621 aaKnown RBP26.39■■□□□ 1.81
COL2A1-205ENST00000474996 RIMBP3CA6NJZ7 1639 aa26.38■■□□□ 1.81
COL2A1-205ENST00000474996 RIMBP3BA6NNM3 1639 aa26.38■■□□□ 1.81
COL2A1-205ENST00000474996 RIMBP3Q9UFD9 1639 aa26.38■■□□□ 1.81
COL2A1-205ENST00000474996 AQRO60306 1485 aaKnown RBP eCLIP26.35■■□□□ 1.81
COL2A1-205ENST00000474996 POLA1P09884 1462 aaPredicted RBP26.34■■□□□ 1.81
COL2A1-205ENST00000474996 ARHGEF11O15085 1522 aa26.28■■□□□ 1.8
COL2A1-205ENST00000474996 CHD1O14646 1710 aa26.28■■□□□ 1.8
COL2A1-205ENST00000474996 RAD54L2Q9Y4B4 1467 aa26.25■■□□□ 1.79
COL2A1-205ENST00000474996 SOGA1O94964 1423 aa26.22■■□□□ 1.79
COL2A1-205ENST00000474996 FGD5Q6ZNL6 1462 aa26.18■■□□□ 1.78
COL2A1-205ENST00000474996 FBLN2P98095 1184 aa26.18■■□□□ 1.78
COL2A1-205ENST00000474996 TDRD9Q8NDG6 1382 aaKnown RBP26.18■■□□□ 1.78
COL2A1-205ENST00000474996 CUX1P39880 1505 aa26.15■■□□□ 1.78
COL2A1-205ENST00000474996 WDR97A6NE52 1622 aa26.09■■□□□ 1.77
COL2A1-205ENST00000474996 CYB5RLQ6IPT4 315 aa26.08■■□□□ 1.77
COL2A1-205ENST00000474996 SNAPC4Q5SXM2 1469 aa26.08■■□□□ 1.77
COL2A1-205ENST00000474996 SUPT5HO00267 1087 aaKnown RBP26.02■■□□□ 1.76
COL2A1-205ENST00000474996 ARAP1Q96P48 1450 aa26.02■■□□□ 1.76
COL2A1-205ENST00000474996 MAGI1Q96QZ7 1491 aaPredicted RBP25.99■■□□□ 1.75
COL2A1-205ENST00000474996 GRIN2BQ13224 1484 aa25.98■■□□□ 1.75
COL2A1-205ENST00000474996 CHMP7Q8WUX9 453 aaPredicted RBP25.97■■□□□ 1.75
COL2A1-205ENST00000474996 CLASP1Q7Z460 1538 aa25.95■■□□□ 1.74
COL2A1-205ENST00000474996 SYNJ1O43426 1573 aa25.93■■□□□ 1.74
COL2A1-205ENST00000474996 PBRM1Q86U86 1689 aa25.92■■□□□ 1.74
COL2A1-205ENST00000474996 SYNJ2O15056 1496 aa25.91■■□□□ 1.74
COL2A1-205ENST00000474996 GAPVD1Q14C86 1478 aa25.9■■□□□ 1.74
COL2A1-205ENST00000474996 ABCA10Q8WWZ4 1543 aa25.87■■□□□ 1.73
COL2A1-205ENST00000474996 ABCA5Q8WWZ7 1642 aa25.85■■□□□ 1.73
COL2A1-205ENST00000474996 TRHP20396 242 aaPredicted RBP25.81■■□□□ 1.72
COL2A1-205ENST00000474996 WRNQ14191 1432 aaPredicted RBP eCLIP25.75■■□□□ 1.71
COL2A1-205ENST00000474996 BIVM-ERCC5R4GMW8 1640 aa25.73■■□□□ 1.71
COL2A1-205ENST00000474996 TOP2BQ02880 1626 aa25.72■■□□□ 1.71
COL2A1-205ENST00000474996 GRIN2AQ12879 1464 aa25.66■■□□□ 1.7
COL2A1-205ENST00000474996 ADAMTS12P58397 1594 aa25.65■■□□□ 1.7
COL2A1-205ENST00000474996 CEP170Q5SW79 1584 aa25.59■■□□□ 1.69
COL2A1-205ENST00000474996 NUP160Q12769 1436 aa25.57■■□□□ 1.68
COL2A1-205ENST00000474996 ERCC6L2Q5T890 1561 aa25.56■■□□□ 1.68
COL2A1-205ENST00000474996 FHAD1B1AJZ9 1412 aa25.56■■□□□ 1.68
COL2A1-205ENST00000474996 ERICH3Q5RHP9 1530 aa25.54■■□□□ 1.68
COL2A1-205ENST00000474996 SHROOM2Q13796 1616 aa25.48■■□□□ 1.67
COL2A1-205ENST00000474996 PRG4Q92954 1404 aaPredicted RBP25.34■■□□□ 1.65
COL2A1-205ENST00000474996 JPH4Q96JJ6 628 aa25.31■■□□□ 1.64
COL2A1-205ENST00000474996 RUSC2Q8N2Y8 1516 aa25.3■■□□□ 1.64
COL2A1-205ENST00000474996 KIF27Q86VH2 1401 aa25.2■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms