RNA–Protein interactions for RNA: ENST00000474838.1

ITGB5-205, Transcript of integrin subunit beta 5, humanhuman

TSL 3

Gene ITGB5, Length 475 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB5-205ENST00000474838 NISCHQ9Y2I1 1504 aa40.19■■■■■ 4.02
ITGB5-205ENST00000474838 CCDC180Q9P1Z9 1646 aa35.99■■■■□ 3.35
ITGB5-205ENST00000474838 ABCC9O60706 1549 aa35.61■■■■□ 3.29
ITGB5-205ENST00000474838 RB1CC1Q8TDY2 1594 aa34.09■■■■□ 3.05
ITGB5-205ENST00000474838 NACADO15069 1562 aa33.93■■■■□ 3.02
ITGB5-205ENST00000474838 DCAF8L2P0C7V8 631 aa33.65■■■□□ 2.98
ITGB5-205ENST00000474838 MYO15BQ96JP2 1530 aa33.6■■■□□ 2.97
ITGB5-205ENST00000474838 ZCCHC6Q5VYS8 1495 aaKnown RBP33.41■■■□□ 2.94
ITGB5-205ENST00000474838 UNC13AQ9UPW8 1703 aa33.28■■■□□ 2.92
ITGB5-205ENST00000474838 DCAF1Q9Y4B6 1507 aa33.27■■■□□ 2.92
ITGB5-205ENST00000474838 PABPN1Q86U42 306 aaKnown RBP eCLIP33.14■■■□□ 2.9
ITGB5-205ENST00000474838 BICRAQ9NZM4 1560 aa33.06■■■□□ 2.88
ITGB5-205ENST00000474838 DNAJC5BQ9UF47 199 aa33.06■■■□□ 2.88
ITGB5-205ENST00000474838 SCRIBQ14160 1630 aa32.77■■■□□ 2.84
ITGB5-205ENST00000474838 SHROOM4Q9ULL8 1493 aa32.74■■■□□ 2.83
ITGB5-205ENST00000474838 EIF4G1Q04637 1599 aaKnown RBP32.24■■■□□ 2.75
ITGB5-205ENST00000474838 CC2D2AQ9P2K1 1620 aa32.21■■■□□ 2.75
ITGB5-205ENST00000474838 CECR2Q9BXF3 1484 aa32.07■■■□□ 2.72
ITGB5-205ENST00000474838 SMARCA4P51532 1647 aa31.31■■■□□ 2.6
ITGB5-205ENST00000474838 NCAPD3P42695 1498 aa31.3■■■□□ 2.6
ITGB5-205ENST00000474838 ATAD2BQ9ULI0 1458 aa31.23■■■□□ 2.59
ITGB5-205ENST00000474838 SMARCA2P51531 1590 aa31.21■■■□□ 2.59
ITGB5-205ENST00000474838 BAZ1AQ9NRL2 1556 aaPredicted RBP31.21■■■□□ 2.59
ITGB5-205ENST00000474838 HMGXB3Q12766 1538 aa31.14■■■□□ 2.58
ITGB5-205ENST00000474838 PEG3Q9GZU2 1588 aa31.02■■■□□ 2.56
ITGB5-205ENST00000474838 BAZ1BQ9UIG0 1483 aaKnown RBP30.97■■■□□ 2.55
ITGB5-205ENST00000474838 MROH2BQ7Z745 1585 aa30.96■■■□□ 2.55
ITGB5-205ENST00000474838 ERCC6Q03468 1493 aa30.76■■■□□ 2.51
ITGB5-205ENST00000474838 NESP48681 1621 aa30.67■■■□□ 2.5
ITGB5-205ENST00000474838 CUX2O14529 1486 aa30.63■■■□□ 2.49
ITGB5-205ENST00000474838 WIZO95785 1651 aa30.58■■■□□ 2.49
ITGB5-205ENST00000474838 LAMC3Q9Y6N6 1575 aa30.57■■■□□ 2.48
ITGB5-205ENST00000474838 RSF1Q96T23 1441 aaPredicted RBP30.42■■■□□ 2.46
ITGB5-205ENST00000474838 THOC2Q8NI27 1593 aaKnown RBP30.37■■■□□ 2.45
ITGB5-205ENST00000474838 PDS5BQ9NTI5 1447 aa30.36■■■□□ 2.45
ITGB5-205ENST00000474838 CADPSQ9ULU8 1353 aa30.34■■■□□ 2.45
ITGB5-205ENST00000474838 KIF21AQ7Z4S6 1674 aa30.31■■■□□ 2.44
ITGB5-205ENST00000474838 TOP2AP11388 1531 aaKnown RBP30.28■■■□□ 2.44
ITGB5-205ENST00000474838 DNAJC5Q9H3Z4 198 aa30.18■■■□□ 2.42
ITGB5-205ENST00000474838 MRC2Q9UBG0 1479 aa30.1■■■□□ 2.41
ITGB5-205ENST00000474838 CFTRP13569 1480 aa30.09■■■□□ 2.41
ITGB5-205ENST00000474838 CEP164Q9UPV0 1460 aa30.04■■■□□ 2.4
ITGB5-205ENST00000474838 WDR62O43379 1518 aa30.02■■■□□ 2.4
ITGB5-205ENST00000474838 FANCD2Q9BXW9 1451 aa30.01■■■□□ 2.4
ITGB5-205ENST00000474838 CCDC88BA6NC98 1476 aa29.87■■■□□ 2.37
ITGB5-205ENST00000474838 PRDM2Q13029 1718 aa29.83■■■□□ 2.37
ITGB5-205ENST00000474838 URB2Q14146 1524 aaKnown RBP29.75■■■□□ 2.35
ITGB5-205ENST00000474838 TOPBP1Q92547 1522 aa29.48■■■□□ 2.31
ITGB5-205ENST00000474838 ABCC8Q09428 1581 aa29.45■■■□□ 2.31
ITGB5-205ENST00000474838 DNMBPQ6XZF7 1577 aa29.43■■■□□ 2.3
ITGB5-205ENST00000474838 IFT140Q96RY7 1462 aa29.42■■■□□ 2.3
ITGB5-205ENST00000474838 ZNF608Q9ULD9 1512 aaPredicted RBP29.3■■■□□ 2.28
ITGB5-205ENST00000474838 EIF4G3O43432 1585 aaKnown RBP29.22■■■□□ 2.27
ITGB5-205ENST00000474838 SUPT5HO00267 1087 aaKnown RBP29.21■■■□□ 2.27
ITGB5-205ENST00000474838 TARBP1Q13395 1621 aaKnown RBP29.2■■■□□ 2.27
ITGB5-205ENST00000474838 POLA1P09884 1462 aaPredicted RBP29.2■■■□□ 2.26
ITGB5-205ENST00000474838 OSCARQ8IYS5 282 aa29.19■■■□□ 2.26
ITGB5-205ENST00000474838 CUX1P39880 1505 aa29.08■■■□□ 2.25
ITGB5-205ENST00000474838 AQRO60306 1485 aaKnown RBP eCLIP29.06■■■□□ 2.24
ITGB5-205ENST00000474838 FGD5Q6ZNL6 1462 aa29.06■■■□□ 2.24
ITGB5-205ENST00000474838 RAD54L2Q9Y4B4 1467 aa29.04■■■□□ 2.24
ITGB5-205ENST00000474838 SOGA1O94964 1423 aa29.03■■■□□ 2.24
ITGB5-205ENST00000474838 WDR97A6NE52 1622 aa28.98■■■□□ 2.23
ITGB5-205ENST00000474838 TRIM41Q8WV44 630 aa28.94■■■□□ 2.22
ITGB5-205ENST00000474838 TDRD9Q8NDG6 1382 aaKnown RBP28.92■■■□□ 2.22
ITGB5-205ENST00000474838 CHD1O14646 1710 aa28.91■■■□□ 2.22
ITGB5-205ENST00000474838 RIMBP3CA6NJZ7 1639 aa28.83■■■□□ 2.21
ITGB5-205ENST00000474838 RIMBP3BA6NNM3 1639 aa28.83■■■□□ 2.21
ITGB5-205ENST00000474838 RIMBP3Q9UFD9 1639 aa28.83■■■□□ 2.21
ITGB5-205ENST00000474838 SNAPC4Q5SXM2 1469 aa28.82■■■□□ 2.2
ITGB5-205ENST00000474838 GRIN2BQ13224 1484 aa28.79■■■□□ 2.2
ITGB5-205ENST00000474838 ARHGEF11O15085 1522 aa28.79■■■□□ 2.2
ITGB5-205ENST00000474838 MAGI1Q96QZ7 1491 aaPredicted RBP28.78■■■□□ 2.2
ITGB5-205ENST00000474838 FBLN2P98095 1184 aa28.77■■■□□ 2.2
ITGB5-205ENST00000474838 ABCA10Q8WWZ4 1543 aa28.77■■■□□ 2.2
ITGB5-205ENST00000474838 TOP2BQ02880 1626 aa28.72■■■□□ 2.19
ITGB5-205ENST00000474838 BIVM-ERCC5R4GMW8 1640 aa28.72■■■□□ 2.19
ITGB5-205ENST00000474838 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
ITGB5-205ENST00000474838 WRNQ14191 1432 aaPredicted RBP eCLIP28.71■■■□□ 2.19
ITGB5-205ENST00000474838 ABCA5Q8WWZ7 1642 aa28.71■■■□□ 2.19
ITGB5-205ENST00000474838 PBRM1Q86U86 1689 aa28.7■■■□□ 2.19
ITGB5-205ENST00000474838 SYNJ1O43426 1573 aa28.67■■■□□ 2.18
ITGB5-205ENST00000474838 SYNJ2O15056 1496 aa28.67■■■□□ 2.18
ITGB5-205ENST00000474838 CHMP7Q8WUX9 453 aaPredicted RBP28.64■■■□□ 2.18
ITGB5-205ENST00000474838 CLASP1Q7Z460 1538 aa28.62■■■□□ 2.17
ITGB5-205ENST00000474838 ARAP1Q96P48 1450 aa28.53■■■□□ 2.16
ITGB5-205ENST00000474838 ADAMTS12P58397 1594 aa28.48■■■□□ 2.15
ITGB5-205ENST00000474838 CYB5RLQ6IPT4 315 aa28.45■■■□□ 2.14
ITGB5-205ENST00000474838 GRIN2AQ12879 1464 aa28.42■■■□□ 2.14
ITGB5-205ENST00000474838 ERICH3Q5RHP9 1530 aa28.42■■■□□ 2.14
ITGB5-205ENST00000474838 FHAD1B1AJZ9 1412 aa28.38■■■□□ 2.13
ITGB5-205ENST00000474838 NUP160Q12769 1436 aa28.33■■■□□ 2.13
ITGB5-205ENST00000474838 CEP170Q5SW79 1584 aa28.31■■■□□ 2.12
ITGB5-205ENST00000474838 SHROOM2Q13796 1616 aa28.18■■■□□ 2.1
ITGB5-205ENST00000474838 KIF27Q86VH2 1401 aa28.14■■■□□ 2.1
ITGB5-205ENST00000474838 ERCC6L2Q5T890 1561 aa28.14■■■□□ 2.1
ITGB5-205ENST00000474838 RUSC2Q8N2Y8 1516 aa28.08■■■□□ 2.08
ITGB5-205ENST00000474838 CUL7Q14999 1698 aa28.07■■■□□ 2.08
ITGB5-205ENST00000474838 IGF1RP08069 1367 aa28.06■■■□□ 2.08
ITGB5-205ENST00000474838 TRHP20396 242 aaPredicted RBP28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms