RNA–Protein interactions for RNA: ENST00000474725.5

EDEM3-206, Transcript of ER degradation enhancing alpha-mannosidase like protein 3, humanhuman

TSL 2

Gene EDEM3, Length 1,911 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDEM3-206ENST00000474725 NISCHQ9Y2I1 1504 aa46.72■■■■■ 5.07
EDEM3-206ENST00000474725 CCDC180Q9P1Z9 1646 aa40.86■■■■■ 4.13
EDEM3-206ENST00000474725 ZCCHC6Q5VYS8 1495 aaKnown RBP39.16■■■■□ 3.86
EDEM3-206ENST00000474725 ABCC9O60706 1549 aa39■■■■□ 3.83
EDEM3-206ENST00000474725 DCAF8L2P0C7V8 631 aa38.74■■■■□ 3.79
EDEM3-206ENST00000474725 DCAF1Q9Y4B6 1507 aa38.6■■■■□ 3.77
EDEM3-206ENST00000474725 MYO15BQ96JP2 1530 aa38.26■■■■□ 3.72
EDEM3-206ENST00000474725 NACADO15069 1562 aa38.15■■■■□ 3.7
EDEM3-206ENST00000474725 RB1CC1Q8TDY2 1594 aa37.91■■■■□ 3.66
EDEM3-206ENST00000474725 SHROOM4Q9ULL8 1493 aa37.9■■■■□ 3.66
EDEM3-206ENST00000474725 SCRIBQ14160 1630 aa37.56■■■■□ 3.6
EDEM3-206ENST00000474725 UNC13AQ9UPW8 1703 aa37.13■■■■□ 3.53
EDEM3-206ENST00000474725 BICRAQ9NZM4 1560 aa36.79■■■■□ 3.48
EDEM3-206ENST00000474725 PABPN1Q86U42 306 aaKnown RBP eCLIP36.74■■■■□ 3.47
EDEM3-206ENST00000474725 CECR2Q9BXF3 1484 aa36.35■■■■□ 3.41
EDEM3-206ENST00000474725 SUPT5HO00267 1087 aaKnown RBP36.3■■■■□ 3.4
EDEM3-206ENST00000474725 RSF1Q96T23 1441 aaPredicted RBP36.11■■■■□ 3.37
EDEM3-206ENST00000474725 MROH2BQ7Z745 1585 aa36.09■■■■□ 3.37
EDEM3-206ENST00000474725 BAZ1AQ9NRL2 1556 aaPredicted RBP36.08■■■■□ 3.37
EDEM3-206ENST00000474725 SMARCA4P51532 1647 aa35.98■■■■□ 3.35
EDEM3-206ENST00000474725 WIZO95785 1651 aa35.78■■■■□ 3.32
EDEM3-206ENST00000474725 EIF4G1Q04637 1599 aaKnown RBP35.7■■■■□ 3.31
EDEM3-206ENST00000474725 PEG3Q9GZU2 1588 aa35.53■■■■□ 3.28
EDEM3-206ENST00000474725 ATAD2BQ9ULI0 1458 aa35.49■■■■□ 3.27
EDEM3-206ENST00000474725 SMARCA2P51531 1590 aa35.43■■■■□ 3.26
EDEM3-206ENST00000474725 TOP2AP11388 1531 aaKnown RBP35.37■■■■□ 3.25
EDEM3-206ENST00000474725 CC2D2AQ9P2K1 1620 aa35.27■■■■□ 3.24
EDEM3-206ENST00000474725 BAZ1BQ9UIG0 1483 aaKnown RBP35.26■■■■□ 3.23
EDEM3-206ENST00000474725 NCAPD3P42695 1498 aa35.23■■■■□ 3.23
EDEM3-206ENST00000474725 HMGXB3Q12766 1538 aa35.13■■■■□ 3.21
EDEM3-206ENST00000474725 CCDC88BA6NC98 1476 aa35.04■■■■□ 3.2
EDEM3-206ENST00000474725 DNAJC5BQ9UF47 199 aa34.75■■■■□ 3.15
EDEM3-206ENST00000474725 CHIC1Q5VXU3 224 aa34.57■■■■□ 3.12
EDEM3-206ENST00000474725 CFTRP13569 1480 aa34.35■■■■□ 3.09
EDEM3-206ENST00000474725 CADPSQ9ULU8 1353 aa34.31■■■■□ 3.08
EDEM3-206ENST00000474725 ABCC8Q09428 1581 aa34.18■■■■□ 3.06
EDEM3-206ENST00000474725 TRIM41Q8WV44 630 aa34.14■■■■□ 3.06
EDEM3-206ENST00000474725 NESP48681 1621 aa34.14■■■■□ 3.06
EDEM3-206ENST00000474725 PRDM2Q13029 1718 aa34.12■■■■□ 3.05
EDEM3-206ENST00000474725 LAMC3Q9Y6N6 1575 aa34.07■■■■□ 3.05
EDEM3-206ENST00000474725 WRNQ14191 1432 aaPredicted RBP eCLIP34■■■■□ 3.039e-6■■■■■ 50.1
EDEM3-206ENST00000474725 FANCD2Q9BXW9 1451 aa33.93■■■■□ 3.02
EDEM3-206ENST00000474725 SYNJ1O43426 1573 aa33.87■■■■□ 3.01
EDEM3-206ENST00000474725 PDS5BQ9NTI5 1447 aa33.83■■■■□ 3.01
EDEM3-206ENST00000474725 CUX1P39880 1505 aa33.76■■■■□ 3
EDEM3-206ENST00000474725 TOP2BQ02880 1626 aa33.75■■■□□ 2.99
EDEM3-206ENST00000474725 CEP164Q9UPV0 1460 aa33.74■■■□□ 2.99
EDEM3-206ENST00000474725 BIVM-ERCC5R4GMW8 1640 aa33.72■■■□□ 2.99
EDEM3-206ENST00000474725 KIF21AQ7Z4S6 1674 aa33.69■■■□□ 2.98
EDEM3-206ENST00000474725 DNMBPQ6XZF7 1577 aa33.55■■■□□ 2.96
EDEM3-206ENST00000474725 FAM9AQ8IZU1 332 aaPredicted RBP33.53■■■□□ 2.96
EDEM3-206ENST00000474725 URB2Q14146 1524 aaKnown RBP33.53■■■□□ 2.96
EDEM3-206ENST00000474725 TOPBP1Q92547 1522 aa33.52■■■□□ 2.96
EDEM3-206ENST00000474725 SOGA1O94964 1423 aa33.48■■■□□ 2.95
EDEM3-206ENST00000474725 ERCC6Q03468 1493 aa33.46■■■□□ 2.95
EDEM3-206ENST00000474725 FGD5Q6ZNL6 1462 aa33.45■■■□□ 2.94
EDEM3-206ENST00000474725 MRC2Q9UBG0 1479 aa33.42■■■□□ 2.94
EDEM3-206ENST00000474725 RUSC2Q8N2Y8 1516 aa33.39■■■□□ 2.94
EDEM3-206ENST00000474725 POLA1P09884 1462 aaPredicted RBP33.33■■■□□ 2.93
EDEM3-206ENST00000474725 EEA1Q15075 1411 aa33.31■■■□□ 2.92
EDEM3-206ENST00000474725 LOC105371045A0A1W2PR82 267 aa33.26■■■□□ 2.91
EDEM3-206ENST00000474725 WDR62O43379 1518 aa33.25■■■□□ 2.91
EDEM3-206ENST00000474725 RAD54L2Q9Y4B4 1467 aa33.25■■■□□ 2.91
EDEM3-206ENST00000474725 THOC2Q8NI27 1593 aaKnown RBP33.23■■■□□ 2.91
EDEM3-206ENST00000474725 CSRNP3Q8WYN3 585 aa33.2■■■□□ 2.91
EDEM3-206ENST00000474725 CUX2O14529 1486 aa33.17■■■□□ 2.9
EDEM3-206ENST00000474725 KIF27Q86VH2 1401 aa33.17■■■□□ 2.9
EDEM3-206ENST00000474725 ABCA10Q8WWZ4 1543 aa33.13■■■□□ 2.89
EDEM3-206ENST00000474725 EHMT2Q96KQ7 1210 aa33.09■■■□□ 2.89
EDEM3-206ENST00000474725 WDR97A6NE52 1622 aa33.05■■■□□ 2.88
EDEM3-206ENST00000474725 TARBP1Q13395 1621 aaKnown RBP33.05■■■□□ 2.88
EDEM3-206ENST00000474725 IFT140Q96RY7 1462 aa32.96■■■□□ 2.87
EDEM3-206ENST00000474725 TDRD9Q8NDG6 1382 aaKnown RBP32.96■■■□□ 2.87
EDEM3-206ENST00000474725 IGF1RP08069 1367 aa32.93■■■□□ 2.86
EDEM3-206ENST00000474725 KIF21BO75037 1637 aa32.9■■■□□ 2.86
EDEM3-206ENST00000474725 ABCA5Q8WWZ7 1642 aa32.89■■■□□ 2.85
EDEM3-206ENST00000474725 PRXQ9BXM0 1461 aa32.86■■■□□ 2.85
EDEM3-206ENST00000474725 GAPVD1Q14C86 1478 aa32.85■■■□□ 2.85
EDEM3-206ENST00000474725 GOLGA3Q08378 1498 aa32.85■■■□□ 2.85
EDEM3-206ENST00000474725 ZNF608Q9ULD9 1512 aaPredicted RBP32.81■■■□□ 2.84
EDEM3-206ENST00000474725 RAPGEF2Q9Y4G8 1499 aa32.81■■■□□ 2.84
EDEM3-206ENST00000474725 AQRO60306 1485 aaKnown RBP eCLIP32.8■■■□□ 2.848e-7■■■□□ 16.1
EDEM3-206ENST00000474725 CARMIL1Q5VZK9 1371 aa32.75■■■□□ 2.83
EDEM3-206ENST00000474725 UBTFP17480 764 aaKnown RBP32.75■■■□□ 2.83
EDEM3-206ENST00000474725 ERICH3Q5RHP9 1530 aa32.73■■■□□ 2.83
EDEM3-206ENST00000474725 TNIKQ9UKE5 1360 aa32.69■■■□□ 2.82
EDEM3-206ENST00000474725 PBRM1Q86U86 1689 aa32.68■■■□□ 2.82
EDEM3-206ENST00000474725 EIF4G3O43432 1585 aaKnown RBP32.66■■■□□ 2.82
EDEM3-206ENST00000474725 CUL7Q14999 1698 aa32.66■■■□□ 2.82
EDEM3-206ENST00000474725 GRIN2BQ13224 1484 aa32.65■■■□□ 2.82
EDEM3-206ENST00000474725 FHAD1B1AJZ9 1412 aa32.49■■■□□ 2.79
EDEM3-206ENST00000474725 ADAMTS12P58397 1594 aa32.48■■■□□ 2.79
EDEM3-206ENST00000474725 CEP162Q5TB80 1403 aa32.48■■■□□ 2.79
EDEM3-206ENST00000474725 SNAPC4Q5SXM2 1469 aa32.48■■■□□ 2.79
EDEM3-206ENST00000474725 MAGI1Q96QZ7 1491 aaPredicted RBP32.39■■■□□ 2.78
EDEM3-206ENST00000474725 RANGAP1P46060 587 aaPredicted RBP32.35■■■□□ 2.77
EDEM3-206ENST00000474725 CLIP1P30622 1438 aa32.32■■■□□ 2.76
EDEM3-206ENST00000474725 SYNJ2O15056 1496 aa32.28■■■□□ 2.76
EDEM3-206ENST00000474725 CTTNBP2Q8WZ74 1663 aa32.25■■■□□ 2.75
EDEM3-206ENST00000474725 CHMP7Q8WUX9 453 aaPredicted RBP32.25■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms