RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 NISCHQ9Y2I1 1504 aa27.18■■□□□ 1.94
SYNE1-222ENST00000474655 CCDC180Q9P1Z9 1646 aa23.61■■□□□ 1.37
SYNE1-222ENST00000474655 ZCCHC6Q5VYS8 1495 aaKnown RBP22.9■■□□□ 1.26
SYNE1-222ENST00000474655 DCAF1Q9Y4B6 1507 aa22.53■■□□□ 1.2
SYNE1-222ENST00000474655 SHROOM4Q9ULL8 1493 aa22.25■■□□□ 1.15
SYNE1-222ENST00000474655 DCAF8L2P0C7V8 631 aa22.19■■□□□ 1.14
SYNE1-222ENST00000474655 MYO15BQ96JP2 1530 aa22.16■■□□□ 1.14
SYNE1-222ENST00000474655 ABCC9O60706 1549 aa21.94■■□□□ 1.1
SYNE1-222ENST00000474655 NACADO15069 1562 aa21.89■■□□□ 1.09
SYNE1-222ENST00000474655 SCRIBQ14160 1630 aa21.66■■□□□ 1.06
SYNE1-222ENST00000474655 RB1CC1Q8TDY2 1594 aa21.61■■□□□ 1.05
SYNE1-222ENST00000474655 SUPT5HO00267 1087 aaKnown RBP21.55■■□□□ 1.04
SYNE1-222ENST00000474655 UNC13AQ9UPW8 1703 aa21.27■■□□□ 1
SYNE1-222ENST00000474655 RSF1Q96T23 1441 aaPredicted RBP21.18■□□□□ 0.98
SYNE1-222ENST00000474655 CECR2Q9BXF3 1484 aa21.07■□□□□ 0.96
SYNE1-222ENST00000474655 MROH2BQ7Z745 1585 aa21■□□□□ 0.95
SYNE1-222ENST00000474655 BICRAQ9NZM4 1560 aa20.99■□□□□ 0.95
SYNE1-222ENST00000474655 BAZ1AQ9NRL2 1556 aaPredicted RBP20.96■□□□□ 0.95
SYNE1-222ENST00000474655 CHIC1Q5VXU3 224 aa20.87■□□□□ 0.93
SYNE1-222ENST00000474655 WIZO95785 1651 aa20.85■□□□□ 0.93
SYNE1-222ENST00000474655 SMARCA4P51532 1647 aa20.84■□□□□ 0.93
SYNE1-222ENST00000474655 PABPN1Q86U42 306 aaKnown RBP eCLIP20.72■□□□□ 0.91
SYNE1-222ENST00000474655 TOP2AP11388 1531 aaKnown RBP20.64■□□□□ 0.89
SYNE1-222ENST00000474655 PEG3Q9GZU2 1588 aa20.62■□□□□ 0.89
SYNE1-222ENST00000474655 SMARCA2P51531 1590 aa20.47■□□□□ 0.87
SYNE1-222ENST00000474655 EIF4G1Q04637 1599 aaKnown RBP20.46■□□□□ 0.87
SYNE1-222ENST00000474655 CCDC88BA6NC98 1476 aa20.42■□□□□ 0.86
SYNE1-222ENST00000474655 ATAD2BQ9ULI0 1458 aa20.4■□□□□ 0.86
SYNE1-222ENST00000474655 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
SYNE1-222ENST00000474655 TRIM41Q8WV44 630 aa20.27■□□□□ 0.84
SYNE1-222ENST00000474655 HMGXB3Q12766 1538 aa20.2■□□□□ 0.82
SYNE1-222ENST00000474655 NCAPD3P42695 1498 aa20.2■□□□□ 0.82
SYNE1-222ENST00000474655 ABCC8Q09428 1581 aa20.07■□□□□ 0.8
SYNE1-222ENST00000474655 LOC105371045A0A1W2PR82 267 aa20.04■□□□□ 0.8
SYNE1-222ENST00000474655 CC2D2AQ9P2K1 1620 aa19.92■□□□□ 0.78
SYNE1-222ENST00000474655 WRNQ14191 1432 aaPredicted RBP eCLIP19.9■□□□□ 0.78
SYNE1-222ENST00000474655 FAM9AQ8IZU1 332 aaPredicted RBP19.85■□□□□ 0.77
SYNE1-222ENST00000474655 SYNJ1O43426 1573 aa19.84■□□□□ 0.77
SYNE1-222ENST00000474655 CFTRP13569 1480 aa19.83■□□□□ 0.76
SYNE1-222ENST00000474655 PRDM2Q13029 1718 aa19.81■□□□□ 0.76
SYNE1-222ENST00000474655 EEA1Q15075 1411 aa19.81■□□□□ 0.76
SYNE1-222ENST00000474655 TOP2BQ02880 1626 aa19.76■□□□□ 0.75
SYNE1-222ENST00000474655 BIVM-ERCC5R4GMW8 1640 aa19.75■□□□□ 0.75
SYNE1-222ENST00000474655 SOGA1O94964 1423 aa19.75■□□□□ 0.75
SYNE1-222ENST00000474655 CADPSQ9ULU8 1353 aa19.67■□□□□ 0.74
SYNE1-222ENST00000474655 RUSC2Q8N2Y8 1516 aa19.67■□□□□ 0.74
SYNE1-222ENST00000474655 CSRNP3Q8WYN3 585 aa19.62■□□□□ 0.73
SYNE1-222ENST00000474655 CUX1P39880 1505 aa19.61■□□□□ 0.73
SYNE1-222ENST00000474655 KIF21BO75037 1637 aa19.56■□□□□ 0.72
SYNE1-222ENST00000474655 TNIKQ9UKE5 1360 aa19.53■□□□□ 0.72
SYNE1-222ENST00000474655 GOLGA3Q08378 1498 aa19.52■□□□□ 0.71
SYNE1-222ENST00000474655 EHMT2Q96KQ7 1210 aa19.51■□□□□ 0.71
SYNE1-222ENST00000474655 CEP164Q9UPV0 1460 aa19.5■□□□□ 0.71
SYNE1-222ENST00000474655 LAMC3Q9Y6N6 1575 aa19.46■□□□□ 0.71
SYNE1-222ENST00000474655 FANCD2Q9BXW9 1451 aa19.44■□□□□ 0.7
SYNE1-222ENST00000474655 CEP162Q5TB80 1403 aa19.42■□□□□ 0.7
SYNE1-222ENST00000474655 PCGF6Q9BYE7 350 aa19.41■□□□□ 0.7
SYNE1-222ENST00000474655 TRIM26Q12899 539 aaPredicted RBP19.39■□□□□ 0.69
SYNE1-222ENST00000474655 NESP48681 1621 aa19.38■□□□□ 0.69
SYNE1-222ENST00000474655 KIF27Q86VH2 1401 aa19.37■□□□□ 0.69
SYNE1-222ENST00000474655 ERICH3Q5RHP9 1530 aa19.37■□□□□ 0.69
SYNE1-222ENST00000474655 PRXQ9BXM0 1461 aa19.36■□□□□ 0.69
SYNE1-222ENST00000474655 DNMBPQ6XZF7 1577 aa19.35■□□□□ 0.69
SYNE1-222ENST00000474655 UBTFP17480 764 aaKnown RBP19.34■□□□□ 0.69
SYNE1-222ENST00000474655 RAPGEF2Q9Y4G8 1499 aa19.34■□□□□ 0.69
SYNE1-222ENST00000474655 FGD5Q6ZNL6 1462 aa19.33■□□□□ 0.68
SYNE1-222ENST00000474655 DNAJC5BQ9UF47 199 aa19.29■□□□□ 0.68
SYNE1-222ENST00000474655 TOPBP1Q92547 1522 aa19.28■□□□□ 0.68
SYNE1-222ENST00000474655 PDS5BQ9NTI5 1447 aa19.26■□□□□ 0.67
SYNE1-222ENST00000474655 CUX2O14529 1486 aa19.24■□□□□ 0.67
SYNE1-222ENST00000474655 POLA1P09884 1462 aaPredicted RBP19.21■□□□□ 0.67
SYNE1-222ENST00000474655 KIF21AQ7Z4S6 1674 aa19.2■□□□□ 0.66
SYNE1-222ENST00000474655 URB2Q14146 1524 aaKnown RBP19.2■□□□□ 0.66
SYNE1-222ENST00000474655 ABCA10Q8WWZ4 1543 aa19.2■□□□□ 0.66
SYNE1-222ENST00000474655 CLIP1P30622 1438 aa19.2■□□□□ 0.66
SYNE1-222ENST00000474655 IGF1RP08069 1367 aa19.19■□□□□ 0.66
SYNE1-222ENST00000474655 WDR97A6NE52 1622 aa19.16■□□□□ 0.66
SYNE1-222ENST00000474655 HRCP23327 699 aa19.14■□□□□ 0.65
SYNE1-222ENST00000474655 RAD54L2Q9Y4B4 1467 aa19.12■□□□□ 0.65
SYNE1-222ENST00000474655 VPS8Q8N3P4 1428 aa19.09■□□□□ 0.65
SYNE1-222ENST00000474655 CARMIL1Q5VZK9 1371 aa19.08■□□□□ 0.64
SYNE1-222ENST00000474655 CUL7Q14999 1698 aa19.05■□□□□ 0.64
SYNE1-222ENST00000474655 ABCA5Q8WWZ7 1642 aa19.04■□□□□ 0.64
SYNE1-222ENST00000474655 TARBP1Q13395 1621 aaKnown RBP19.01■□□□□ 0.63
SYNE1-222ENST00000474655 PPARGC1BQ86YN6 1023 aaKnown RBP19.01■□□□□ 0.63
SYNE1-222ENST00000474655 ARAP1Q96P48 1450 aa19.01■□□□□ 0.63
SYNE1-222ENST00000474655 MRC2Q9UBG0 1479 aa19■□□□□ 0.63
SYNE1-222ENST00000474655 ARHGAP35Q9NRY4 1499 aa18.96■□□□□ 0.63
SYNE1-222ENST00000474655 GAPVD1Q14C86 1478 aa18.93■□□□□ 0.62
SYNE1-222ENST00000474655 WDR62O43379 1518 aa18.92■□□□□ 0.62
SYNE1-222ENST00000474655 CTTNBP2Q8WZ74 1663 aa18.9■□□□□ 0.62
SYNE1-222ENST00000474655 TDRD9Q8NDG6 1382 aaKnown RBP18.89■□□□□ 0.61
SYNE1-222ENST00000474655 RANGAP1P46060 587 aaPredicted RBP18.87■□□□□ 0.61
SYNE1-222ENST00000474655 PBRM1Q86U86 1689 aa18.85■□□□□ 0.61
SYNE1-222ENST00000474655 APLP2Q06481 763 aa18.82■□□□□ 0.6
SYNE1-222ENST00000474655 IFT140Q96RY7 1462 aa18.81■□□□□ 0.6
SYNE1-222ENST00000474655 THOC2Q8NI27 1593 aaKnown RBP18.81■□□□□ 0.6
SYNE1-222ENST00000474655 EFCAB5A4FU69 1503 aa18.8■□□□□ 0.6
SYNE1-222ENST00000474655 MAP3K1Q13233 1512 aa18.77■□□□□ 0.6
SYNE1-222ENST00000474655 ZEB1P37275 1124 aaPredicted RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms