RNA–Protein interactions for RNA: ENST00000474642.1

RTN4R-206, Transcript of reticulon 4 receptor, humanhuman

TSL 4

Gene RTN4R, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4R-206ENST00000474642 NISCHQ9Y2I1 1504 aa33.88■■■■□ 3.01
RTN4R-206ENST00000474642 ABCC9O60706 1549 aa31.26■■■□□ 2.59
RTN4R-206ENST00000474642 CCDC180Q9P1Z9 1646 aa30.62■■■□□ 2.49
RTN4R-206ENST00000474642 DNAJC5BQ9UF47 199 aa29.84■■■□□ 2.37
RTN4R-206ENST00000474642 RB1CC1Q8TDY2 1594 aa29.47■■■□□ 2.31
RTN4R-206ENST00000474642 NACADO15069 1562 aa29.12■■■□□ 2.25
RTN4R-206ENST00000474642 PABPN1Q86U42 306 aaKnown RBP eCLIP29.05■■■□□ 2.24
RTN4R-206ENST00000474642 DCAF8L2P0C7V8 631 aa29■■■□□ 2.23
RTN4R-206ENST00000474642 UNC13AQ9UPW8 1703 aa28.76■■■□□ 2.19
RTN4R-206ENST00000474642 BICRAQ9NZM4 1560 aa28.59■■■□□ 2.17
RTN4R-206ENST00000474642 MYO15BQ96JP2 1530 aa28.49■■■□□ 2.15
RTN4R-206ENST00000474642 CECR2Q9BXF3 1484 aa28.22■■■□□ 2.11
RTN4R-206ENST00000474642 CC2D2AQ9P2K1 1620 aa28.18■■■□□ 2.1
RTN4R-206ENST00000474642 SHROOM4Q9ULL8 1493 aa28.15■■■□□ 2.1
RTN4R-206ENST00000474642 EIF4G1Q04637 1599 aaKnown RBP27.96■■■□□ 2.07
RTN4R-206ENST00000474642 ZCCHC6Q5VYS8 1495 aaKnown RBP27.93■■■□□ 2.06
RTN4R-206ENST00000474642 DCAF1Q9Y4B6 1507 aa27.92■■■□□ 2.06
RTN4R-206ENST00000474642 SCRIBQ14160 1630 aa27.91■■■□□ 2.06
RTN4R-206ENST00000474642 DNAJC5Q9H3Z4 198 aa27.85■■■□□ 2.05
RTN4R-206ENST00000474642 CUX2O14529 1486 aa27.17■■□□□ 1.94
RTN4R-206ENST00000474642 ERCC6Q03468 1493 aa27.06■■□□□ 1.92
RTN4R-206ENST00000474642 NCAPD3P42695 1498 aa26.89■■□□□ 1.9
RTN4R-206ENST00000474642 ATAD2BQ9ULI0 1458 aa26.74■■□□□ 1.87
RTN4R-206ENST00000474642 NESP48681 1621 aa26.68■■□□□ 1.86
RTN4R-206ENST00000474642 SMARCA2P51531 1590 aa26.63■■□□□ 1.85
RTN4R-206ENST00000474642 HMGXB3Q12766 1538 aa26.62■■□□□ 1.85
RTN4R-206ENST00000474642 SMARCA4P51532 1647 aa26.54■■□□□ 1.84
RTN4R-206ENST00000474642 THOC2Q8NI27 1593 aaKnown RBP26.47■■□□□ 1.83
RTN4R-206ENST00000474642 BAZ1BQ9UIG0 1483 aaKnown RBP26.47■■□□□ 1.83
RTN4R-206ENST00000474642 TRIM41Q8WV44 630 aa26.45■■□□□ 1.82
RTN4R-206ENST00000474642 LAMC3Q9Y6N6 1575 aa26.37■■□□□ 1.81
RTN4R-206ENST00000474642 BAZ1AQ9NRL2 1556 aaPredicted RBP26.33■■□□□ 1.81
RTN4R-206ENST00000474642 PDS5BQ9NTI5 1447 aa26.29■■□□□ 1.8
RTN4R-206ENST00000474642 KIF21AQ7Z4S6 1674 aa26.28■■□□□ 1.8
RTN4R-206ENST00000474642 PEG3Q9GZU2 1588 aa26.26■■□□□ 1.79
RTN4R-206ENST00000474642 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
RTN4R-206ENST00000474642 CADPSQ9ULU8 1353 aa26.07■■□□□ 1.76
RTN4R-206ENST00000474642 MRC2Q9UBG0 1479 aa26.07■■□□□ 1.76
RTN4R-206ENST00000474642 WDR62O43379 1518 aa25.99■■□□□ 1.75
RTN4R-206ENST00000474642 OSCARQ8IYS5 282 aa25.9■■□□□ 1.74
RTN4R-206ENST00000474642 CEP164Q9UPV0 1460 aa25.86■■□□□ 1.73
RTN4R-206ENST00000474642 FANCD2Q9BXW9 1451 aa25.78■■□□□ 1.72
RTN4R-206ENST00000474642 WIZO95785 1651 aa25.76■■□□□ 1.71
RTN4R-206ENST00000474642 CFTRP13569 1480 aa25.64■■□□□ 1.69
RTN4R-206ENST00000474642 URB2Q14146 1524 aaKnown RBP25.58■■□□□ 1.69
RTN4R-206ENST00000474642 RIMBP3CA6NJZ7 1639 aa25.55■■□□□ 1.68
RTN4R-206ENST00000474642 RIMBP3BA6NNM3 1639 aa25.55■■□□□ 1.68
RTN4R-206ENST00000474642 RIMBP3Q9UFD9 1639 aa25.55■■□□□ 1.68
RTN4R-206ENST00000474642 ARHGEF11O15085 1522 aa25.42■■□□□ 1.66
RTN4R-206ENST00000474642 TOP2AP11388 1531 aaKnown RBP25.38■■□□□ 1.65
RTN4R-206ENST00000474642 ZNF608Q9ULD9 1512 aaPredicted RBP25.37■■□□□ 1.65
RTN4R-206ENST00000474642 IFT140Q96RY7 1462 aa25.36■■□□□ 1.65
RTN4R-206ENST00000474642 RSF1Q96T23 1441 aaPredicted RBP25.36■■□□□ 1.65
RTN4R-206ENST00000474642 CYB5RLQ6IPT4 315 aa25.35■■□□□ 1.65
RTN4R-206ENST00000474642 PRDM2Q13029 1718 aa25.29■■□□□ 1.64
RTN4R-206ENST00000474642 TRHP20396 242 aaPredicted RBP25.29■■□□□ 1.64
RTN4R-206ENST00000474642 TOPBP1Q92547 1522 aa25.22■■□□□ 1.63
RTN4R-206ENST00000474642 EIF4G3O43432 1585 aaKnown RBP25.18■■□□□ 1.62
RTN4R-206ENST00000474642 ABCC8Q09428 1581 aa25.14■■□□□ 1.61
RTN4R-206ENST00000474642 FBLN2P98095 1184 aa25.13■■□□□ 1.61
RTN4R-206ENST00000474642 CCDC88BA6NC98 1476 aa25.13■■□□□ 1.61
RTN4R-206ENST00000474642 ARAP1Q96P48 1450 aa25.12■■□□□ 1.61
RTN4R-206ENST00000474642 CHD1O14646 1710 aa25.11■■□□□ 1.61
RTN4R-206ENST00000474642 AQRO60306 1485 aaKnown RBP eCLIP25.09■■□□□ 1.61
RTN4R-206ENST00000474642 DNMBPQ6XZF7 1577 aa25.05■■□□□ 1.6
RTN4R-206ENST00000474642 AEBP2Q6ZN18 517 aaPredicted RBP25■■□□□ 1.59
RTN4R-206ENST00000474642 TARBP1Q13395 1621 aaKnown RBP25■■□□□ 1.59
RTN4R-206ENST00000474642 POLA1P09884 1462 aaPredicted RBP24.91■■□□□ 1.58
RTN4R-206ENST00000474642 TDRD9Q8NDG6 1382 aaKnown RBP24.87■■□□□ 1.57
RTN4R-206ENST00000474642 RAD54L2Q9Y4B4 1467 aa24.86■■□□□ 1.57
RTN4R-206ENST00000474642 CHMP7Q8WUX9 453 aaPredicted RBP24.83■■□□□ 1.57
RTN4R-206ENST00000474642 SOGA1O94964 1423 aa24.83■■□□□ 1.57
RTN4R-206ENST00000474642 SNAPC4Q5SXM2 1469 aa24.81■■□□□ 1.56
RTN4R-206ENST00000474642 CLASP1Q7Z460 1538 aa24.79■■□□□ 1.56
RTN4R-206ENST00000474642 SYNJ1O43426 1573 aa24.76■■□□□ 1.55
RTN4R-206ENST00000474642 MAGI1Q96QZ7 1491 aaPredicted RBP24.7■■□□□ 1.55
RTN4R-206ENST00000474642 WDR97A6NE52 1622 aa24.7■■□□□ 1.54
RTN4R-206ENST00000474642 FGD5Q6ZNL6 1462 aa24.68■■□□□ 1.54
RTN4R-206ENST00000474642 GRIN2BQ13224 1484 aa24.66■■□□□ 1.54
RTN4R-206ENST00000474642 SYNJ2O15056 1496 aa24.64■■□□□ 1.54
RTN4R-206ENST00000474642 GAPVD1Q14C86 1478 aa24.62■■□□□ 1.53
RTN4R-206ENST00000474642 CUX1P39880 1505 aa24.56■■□□□ 1.52
RTN4R-206ENST00000474642 PBRM1Q86U86 1689 aa24.49■■□□□ 1.51
RTN4R-206ENST00000474642 ERCC6L2Q5T890 1561 aa24.37■■□□□ 1.49
RTN4R-206ENST00000474642 ABCA10Q8WWZ4 1543 aa24.36■■□□□ 1.49
RTN4R-206ENST00000474642 ABCA5Q8WWZ7 1642 aa24.35■■□□□ 1.49
RTN4R-206ENST00000474642 GRIN2AQ12879 1464 aa24.32■■□□□ 1.48
RTN4R-206ENST00000474642 CEP170Q5SW79 1584 aa24.3■■□□□ 1.48
RTN4R-206ENST00000474642 NUP160Q12769 1436 aa24.27■■□□□ 1.48
RTN4R-206ENST00000474642 ADAMTS12P58397 1594 aa24.21■■□□□ 1.47
RTN4R-206ENST00000474642 KIF13AQ9H1H9 1805 aa24.21■■□□□ 1.47
RTN4R-206ENST00000474642 SHROOM2Q13796 1616 aa24.19■■□□□ 1.46
RTN4R-206ENST00000474642 WRNQ14191 1432 aaPredicted RBP eCLIP24.18■■□□□ 1.46
RTN4R-206ENST00000474642 FHAD1B1AJZ9 1412 aa24.17■■□□□ 1.46
RTN4R-206ENST00000474642 PRG4Q92954 1404 aaPredicted RBP24.12■■□□□ 1.45
RTN4R-206ENST00000474642 FAM69CQ0P6D2 419 aa24.12■■□□□ 1.45
RTN4R-206ENST00000474642 NPM1P06748 294 aaKnown RBP eCLIP24.08■■□□□ 1.45
RTN4R-206ENST00000474642 JPH4Q96JJ6 628 aa24.08■■□□□ 1.45
RTN4R-206ENST00000474642 ABCC10Q5T3U5 1492 aa24.05■■□□□ 1.44
RTN4R-206ENST00000474642 ERICH3Q5RHP9 1530 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms