RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 NISCHQ9Y2I1 1504 aa46.31■■■■■ 5
COL7A1-209ENST00000474432 CCDC180Q9P1Z9 1646 aa41.4■■■■■ 4.22
COL7A1-209ENST00000474432 ABCC9O60706 1549 aa41.03■■■■■ 4.16
COL7A1-209ENST00000474432 RB1CC1Q8TDY2 1594 aa39.19■■■■□ 3.86
COL7A1-209ENST00000474432 NACADO15069 1562 aa39.04■■■■□ 3.84
COL7A1-209ENST00000474432 DCAF8L2P0C7V8 631 aa38.8■■■■□ 3.8
COL7A1-209ENST00000474432 MYO15BQ96JP2 1530 aa38.64■■■■□ 3.78
COL7A1-209ENST00000474432 ZCCHC6Q5VYS8 1495 aaKnown RBP38.46■■■■□ 3.75
COL7A1-209ENST00000474432 UNC13AQ9UPW8 1703 aa38.42■■■■□ 3.74
COL7A1-209ENST00000474432 DNAJC5BQ9UF47 199 aa38.29■■■■□ 3.72
COL7A1-209ENST00000474432 DCAF1Q9Y4B6 1507 aa38.28■■■■□ 3.72
COL7A1-209ENST00000474432 PABPN1Q86U42 306 aaKnown RBP eCLIP38.26■■■■□ 3.721e-9■■■■■ 29.5
COL7A1-209ENST00000474432 BICRAQ9NZM4 1560 aa38.16■■■■□ 3.7
COL7A1-209ENST00000474432 SCRIBQ14160 1630 aa37.72■■■■□ 3.63
COL7A1-209ENST00000474432 SHROOM4Q9ULL8 1493 aa37.57■■■■□ 3.6
COL7A1-209ENST00000474432 EIF4G1Q04637 1599 aaKnown RBP37.12■■■■□ 3.53
COL7A1-209ENST00000474432 CC2D2AQ9P2K1 1620 aa37.11■■■■□ 3.53
COL7A1-209ENST00000474432 CECR2Q9BXF3 1484 aa36.92■■■■□ 3.5
COL7A1-209ENST00000474432 NCAPD3P42695 1498 aa36.06■■■■□ 3.36
COL7A1-209ENST00000474432 SMARCA4P51532 1647 aa36.05■■■■□ 3.36
COL7A1-209ENST00000474432 ATAD2BQ9ULI0 1458 aa36■■■■□ 3.35
COL7A1-209ENST00000474432 BAZ1AQ9NRL2 1556 aaPredicted RBP35.89■■■■□ 3.34
COL7A1-209ENST00000474432 SMARCA2P51531 1590 aa35.86■■■■□ 3.33
COL7A1-209ENST00000474432 HMGXB3Q12766 1538 aa35.8■■■■□ 3.32
COL7A1-209ENST00000474432 PEG3Q9GZU2 1588 aa35.72■■■■□ 3.31
COL7A1-209ENST00000474432 MROH2BQ7Z745 1585 aa35.72■■■■□ 3.31
COL7A1-209ENST00000474432 BAZ1BQ9UIG0 1483 aaKnown RBP35.6■■■■□ 3.29
COL7A1-209ENST00000474432 NESP48681 1621 aa35.4■■■■□ 3.26
COL7A1-209ENST00000474432 ERCC6Q03468 1493 aa35.32■■■■□ 3.24
COL7A1-209ENST00000474432 WIZO95785 1651 aa35.3■■■■□ 3.24
COL7A1-209ENST00000474432 CUX2O14529 1486 aa35.2■■■■□ 3.23
COL7A1-209ENST00000474432 LAMC3Q9Y6N6 1575 aa35.16■■■■□ 3.22
COL7A1-209ENST00000474432 RSF1Q96T23 1441 aaPredicted RBP35.08■■■■□ 3.21
COL7A1-209ENST00000474432 THOC2Q8NI27 1593 aaKnown RBP34.97■■■■□ 3.19
COL7A1-209ENST00000474432 CADPSQ9ULU8 1353 aa34.95■■■■□ 3.19
COL7A1-209ENST00000474432 KIF21AQ7Z4S6 1674 aa34.95■■■■□ 3.18
COL7A1-209ENST00000474432 PDS5BQ9NTI5 1447 aa34.89■■■■□ 3.18
COL7A1-209ENST00000474432 TOP2AP11388 1531 aaKnown RBP34.84■■■■□ 3.17
COL7A1-209ENST00000474432 DNAJC5Q9H3Z4 198 aa34.82■■■■□ 3.16
COL7A1-209ENST00000474432 CFTRP13569 1480 aa34.65■■■■□ 3.14
COL7A1-209ENST00000474432 MRC2Q9UBG0 1479 aa34.61■■■■□ 3.13
COL7A1-209ENST00000474432 WDR62O43379 1518 aa34.55■■■■□ 3.12
COL7A1-209ENST00000474432 FANCD2Q9BXW9 1451 aa34.54■■■■□ 3.12
COL7A1-209ENST00000474432 CEP164Q9UPV0 1460 aa34.52■■■■□ 3.12
COL7A1-209ENST00000474432 CCDC88BA6NC98 1476 aa34.46■■■■□ 3.11
COL7A1-209ENST00000474432 PRDM2Q13029 1718 aa34.33■■■■□ 3.09
COL7A1-209ENST00000474432 URB2Q14146 1524 aaKnown RBP34.29■■■■□ 3.08
COL7A1-209ENST00000474432 TOPBP1Q92547 1522 aa33.95■■■■□ 3.03
COL7A1-209ENST00000474432 ABCC8Q09428 1581 aa33.85■■■■□ 3.01
COL7A1-209ENST00000474432 DNMBPQ6XZF7 1577 aa33.85■■■■□ 3.01
COL7A1-209ENST00000474432 IFT140Q96RY7 1462 aa33.83■■■■□ 3.01
COL7A1-209ENST00000474432 ZNF608Q9ULD9 1512 aaPredicted RBP33.81■■■■□ 3
COL7A1-209ENST00000474432 SUPT5HO00267 1087 aaKnown RBP33.69■■■□□ 2.98
COL7A1-209ENST00000474432 TARBP1Q13395 1621 aaKnown RBP33.67■■■□□ 2.98
COL7A1-209ENST00000474432 POLA1P09884 1462 aaPredicted RBP33.63■■■□□ 2.97
COL7A1-209ENST00000474432 OSCARQ8IYS5 282 aa33.62■■■□□ 2.97
COL7A1-209ENST00000474432 EIF4G3O43432 1585 aaKnown RBP33.61■■■□□ 2.97
COL7A1-209ENST00000474432 CUX1P39880 1505 aa33.53■■■□□ 2.96
COL7A1-209ENST00000474432 AQRO60306 1485 aaKnown RBP eCLIP33.52■■■□□ 2.96
COL7A1-209ENST00000474432 RAD54L2Q9Y4B4 1467 aa33.51■■■□□ 2.96
COL7A1-209ENST00000474432 FGD5Q6ZNL6 1462 aa33.46■■■□□ 2.95
COL7A1-209ENST00000474432 SOGA1O94964 1423 aa33.45■■■□□ 2.95
COL7A1-209ENST00000474432 TDRD9Q8NDG6 1382 aaKnown RBP33.35■■■□□ 2.93
COL7A1-209ENST00000474432 TRIM41Q8WV44 630 aa33.35■■■□□ 2.93
COL7A1-209ENST00000474432 CHD1O14646 1710 aa33.31■■■□□ 2.92
COL7A1-209ENST00000474432 WDR97A6NE52 1622 aa33.28■■■□□ 2.92
COL7A1-209ENST00000474432 RIMBP3CA6NJZ7 1639 aa33.22■■■□□ 2.91
COL7A1-209ENST00000474432 RIMBP3BA6NNM3 1639 aa33.22■■■□□ 2.91
COL7A1-209ENST00000474432 RIMBP3Q9UFD9 1639 aa33.22■■■□□ 2.91
COL7A1-209ENST00000474432 SNAPC4Q5SXM2 1469 aa33.17■■■□□ 2.9
COL7A1-209ENST00000474432 ARHGEF11O15085 1522 aa33.14■■■□□ 2.9
COL7A1-209ENST00000474432 FBLN2P98095 1184 aa33.12■■■□□ 2.89
COL7A1-209ENST00000474432 GRIN2BQ13224 1484 aa33.12■■■□□ 2.89
COL7A1-209ENST00000474432 ABCA10Q8WWZ4 1543 aa33.11■■■□□ 2.89
COL7A1-209ENST00000474432 MAGI1Q96QZ7 1491 aaPredicted RBP33.08■■■□□ 2.89
COL7A1-209ENST00000474432 BIVM-ERCC5R4GMW8 1640 aa33.08■■■□□ 2.89
COL7A1-209ENST00000474432 TOP2BQ02880 1626 aa33.06■■■□□ 2.88
COL7A1-209ENST00000474432 ABCA5Q8WWZ7 1642 aa33.06■■■□□ 2.88
COL7A1-209ENST00000474432 GAPVD1Q14C86 1478 aa33.05■■■□□ 2.88
COL7A1-209ENST00000474432 SYNJ1O43426 1573 aa33.05■■■□□ 2.88
COL7A1-209ENST00000474432 PBRM1Q86U86 1689 aa33.04■■■□□ 2.88
COL7A1-209ENST00000474432 WRNQ14191 1432 aaPredicted RBP eCLIP33.03■■■□□ 2.88
COL7A1-209ENST00000474432 SYNJ2O15056 1496 aa32.98■■■□□ 2.87
COL7A1-209ENST00000474432 CLASP1Q7Z460 1538 aa32.96■■■□□ 2.87
COL7A1-209ENST00000474432 CHMP7Q8WUX9 453 aaPredicted RBP32.95■■■□□ 2.87
COL7A1-209ENST00000474432 ARAP1Q96P48 1450 aa32.86■■■□□ 2.85
COL7A1-209ENST00000474432 CYB5RLQ6IPT4 315 aa32.82■■■□□ 2.84
COL7A1-209ENST00000474432 ADAMTS12P58397 1594 aa32.75■■■□□ 2.83
COL7A1-209ENST00000474432 GRIN2AQ12879 1464 aa32.71■■■□□ 2.83
COL7A1-209ENST00000474432 ERICH3Q5RHP9 1530 aa32.68■■■□□ 2.82
COL7A1-209ENST00000474432 FHAD1B1AJZ9 1412 aa32.64■■■□□ 2.82
COL7A1-209ENST00000474432 CEP170Q5SW79 1584 aa32.62■■■□□ 2.81
COL7A1-209ENST00000474432 NUP160Q12769 1436 aa32.61■■■□□ 2.81
COL7A1-209ENST00000474432 ERCC6L2Q5T890 1561 aa32.5■■■□□ 2.79
COL7A1-209ENST00000474432 SHROOM2Q13796 1616 aa32.46■■■□□ 2.79
COL7A1-209ENST00000474432 IGF1RP08069 1367 aa32.38■■■□□ 2.77
COL7A1-209ENST00000474432 KIF27Q86VH2 1401 aa32.35■■■□□ 2.77
COL7A1-209ENST00000474432 RUSC2Q8N2Y8 1516 aa32.29■■■□□ 2.76
COL7A1-209ENST00000474432 TRHP20396 242 aaPredicted RBP32.27■■■□□ 2.76
COL7A1-209ENST00000474432 CUL7Q14999 1698 aa32.26■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms