RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 NISCHQ9Y2I1 1504 aa27.56■■■□□ 2
SEMA4D-216ENST00000474258 CCDC180Q9P1Z9 1646 aa24.73■■□□□ 1.55
SEMA4D-216ENST00000474258 ABCC9O60706 1549 aa24.59■■□□□ 1.53
SEMA4D-216ENST00000474258 RB1CC1Q8TDY2 1594 aa23.48■■□□□ 1.35
SEMA4D-216ENST00000474258 NACADO15069 1562 aa23.35■■□□□ 1.33
SEMA4D-216ENST00000474258 DCAF8L2P0C7V8 631 aa23.24■■□□□ 1.31
SEMA4D-216ENST00000474258 MYO15BQ96JP2 1530 aa23.04■■□□□ 1.28
SEMA4D-216ENST00000474258 UNC13AQ9UPW8 1703 aa23.02■■□□□ 1.28
SEMA4D-216ENST00000474258 DNAJC5BQ9UF47 199 aa22.98■■□□□ 1.27
SEMA4D-216ENST00000474258 PABPN1Q86U42 306 aaKnown RBP eCLIP22.9■■□□□ 1.26
SEMA4D-216ENST00000474258 ZCCHC6Q5VYS8 1495 aaKnown RBP22.84■■□□□ 1.25
SEMA4D-216ENST00000474258 DCAF1Q9Y4B6 1507 aa22.78■■□□□ 1.24
SEMA4D-216ENST00000474258 BICRAQ9NZM4 1560 aa22.76■■□□□ 1.23
SEMA4D-216ENST00000474258 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
SEMA4D-216ENST00000474258 SHROOM4Q9ULL8 1493 aa22.47■■□□□ 1.19
SEMA4D-216ENST00000474258 CC2D2AQ9P2K1 1620 aa22.25■■□□□ 1.15
SEMA4D-216ENST00000474258 EIF4G1Q04637 1599 aaKnown RBP22.21■■□□□ 1.15
SEMA4D-216ENST00000474258 CECR2Q9BXF3 1484 aa22.15■■□□□ 1.14
SEMA4D-216ENST00000474258 NCAPD3P42695 1498 aa21.53■■□□□ 1.04
SEMA4D-216ENST00000474258 SMARCA4P51532 1647 aa21.48■■□□□ 1.03
SEMA4D-216ENST00000474258 ATAD2BQ9ULI0 1458 aa21.47■■□□□ 1.03
SEMA4D-216ENST00000474258 SMARCA2P51531 1590 aa21.44■■□□□ 1.02
SEMA4D-216ENST00000474258 BAZ1AQ9NRL2 1556 aaPredicted RBP21.4■■□□□ 1.02
SEMA4D-216ENST00000474258 HMGXB3Q12766 1538 aa21.38■■□□□ 1.01
SEMA4D-216ENST00000474258 PEG3Q9GZU2 1588 aa21.27■■□□□ 1
SEMA4D-216ENST00000474258 BAZ1BQ9UIG0 1483 aaKnown RBP21.27■■□□□ 1
SEMA4D-216ENST00000474258 ERCC6Q03468 1493 aa21.24■□□□□ 0.99
SEMA4D-216ENST00000474258 MROH2BQ7Z745 1585 aa21.22■□□□□ 0.99
SEMA4D-216ENST00000474258 CUX2O14529 1486 aa21.18■□□□□ 0.98
SEMA4D-216ENST00000474258 NESP48681 1621 aa21.15■□□□□ 0.98
SEMA4D-216ENST00000474258 DNAJC5Q9H3Z4 198 aa21.07■□□□□ 0.96
SEMA4D-216ENST00000474258 LAMC3Q9Y6N6 1575 aa21.06■□□□□ 0.96
SEMA4D-216ENST00000474258 WIZO95785 1651 aa21.01■□□□□ 0.95
SEMA4D-216ENST00000474258 KIF21AQ7Z4S6 1674 aa20.93■□□□□ 0.94
SEMA4D-216ENST00000474258 THOC2Q8NI27 1593 aaKnown RBP20.93■□□□□ 0.94
SEMA4D-216ENST00000474258 PDS5BQ9NTI5 1447 aa20.92■□□□□ 0.94
SEMA4D-216ENST00000474258 CADPSQ9ULU8 1353 aa20.88■□□□□ 0.93
SEMA4D-216ENST00000474258 RSF1Q96T23 1441 aaPredicted RBP20.81■□□□□ 0.92
SEMA4D-216ENST00000474258 TOP2AP11388 1531 aaKnown RBP20.73■□□□□ 0.91
SEMA4D-216ENST00000474258 MRC2Q9UBG0 1479 aa20.71■□□□□ 0.91
SEMA4D-216ENST00000474258 CEP164Q9UPV0 1460 aa20.66■□□□□ 0.9
SEMA4D-216ENST00000474258 WDR62O43379 1518 aa20.66■□□□□ 0.9
SEMA4D-216ENST00000474258 CFTRP13569 1480 aa20.65■□□□□ 0.9
SEMA4D-216ENST00000474258 FANCD2Q9BXW9 1451 aa20.64■□□□□ 0.89
SEMA4D-216ENST00000474258 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
SEMA4D-216ENST00000474258 CCDC88BA6NC98 1476 aa20.49■□□□□ 0.87
SEMA4D-216ENST00000474258 URB2Q14146 1524 aaKnown RBP20.45■□□□□ 0.86
SEMA4D-216ENST00000474258 TOPBP1Q92547 1522 aa20.27■□□□□ 0.83
SEMA4D-216ENST00000474258 ABCC8Q09428 1581 aa20.26■□□□□ 0.83
SEMA4D-216ENST00000474258 OSCARQ8IYS5 282 aa20.24■□□□□ 0.83
SEMA4D-216ENST00000474258 IFT140Q96RY7 1462 aa20.24■□□□□ 0.83
SEMA4D-216ENST00000474258 DNMBPQ6XZF7 1577 aa20.21■□□□□ 0.83
SEMA4D-216ENST00000474258 TRIM41Q8WV44 630 aa20.18■□□□□ 0.82
SEMA4D-216ENST00000474258 ZNF608Q9ULD9 1512 aaPredicted RBP20.17■□□□□ 0.82
SEMA4D-216ENST00000474258 EIF4G3O43432 1585 aaKnown RBP20.09■□□□□ 0.81
SEMA4D-216ENST00000474258 TARBP1Q13395 1621 aaKnown RBP20.08■□□□□ 0.8
SEMA4D-216ENST00000474258 POLA1P09884 1462 aaPredicted RBP20.05■□□□□ 0.8
SEMA4D-216ENST00000474258 AQRO60306 1485 aaKnown RBP eCLIP20.02■□□□□ 0.8
SEMA4D-216ENST00000474258 SOGA1O94964 1423 aa19.98■□□□□ 0.79
SEMA4D-216ENST00000474258 CHD1O14646 1710 aa19.98■□□□□ 0.79
SEMA4D-216ENST00000474258 SUPT5HO00267 1087 aaKnown RBP19.97■□□□□ 0.79
SEMA4D-216ENST00000474258 RAD54L2Q9Y4B4 1467 aa19.97■□□□□ 0.79
SEMA4D-216ENST00000474258 RIMBP3CA6NJZ7 1639 aa19.96■□□□□ 0.79
SEMA4D-216ENST00000474258 RIMBP3BA6NNM3 1639 aa19.96■□□□□ 0.79
SEMA4D-216ENST00000474258 RIMBP3Q9UFD9 1639 aa19.96■□□□□ 0.79
SEMA4D-216ENST00000474258 FGD5Q6ZNL6 1462 aa19.94■□□□□ 0.78
SEMA4D-216ENST00000474258 CUX1P39880 1505 aa19.93■□□□□ 0.78
SEMA4D-216ENST00000474258 TDRD9Q8NDG6 1382 aaKnown RBP19.91■□□□□ 0.78
SEMA4D-216ENST00000474258 WDR97A6NE52 1622 aa19.91■□□□□ 0.78
SEMA4D-216ENST00000474258 ARHGEF11O15085 1522 aa19.89■□□□□ 0.77
SEMA4D-216ENST00000474258 FBLN2P98095 1184 aa19.89■□□□□ 0.77
SEMA4D-216ENST00000474258 SNAPC4Q5SXM2 1469 aa19.81■□□□□ 0.76
SEMA4D-216ENST00000474258 GRIN2BQ13224 1484 aa19.79■□□□□ 0.76
SEMA4D-216ENST00000474258 MAGI1Q96QZ7 1491 aaPredicted RBP19.79■□□□□ 0.76
SEMA4D-216ENST00000474258 CHMP7Q8WUX9 453 aaPredicted RBP19.77■□□□□ 0.76
SEMA4D-216ENST00000474258 PBRM1Q86U86 1689 aa19.77■□□□□ 0.76
SEMA4D-216ENST00000474258 CYB5RLQ6IPT4 315 aa19.75■□□□□ 0.75
SEMA4D-216ENST00000474258 GAPVD1Q14C86 1478 aa19.73■□□□□ 0.75
SEMA4D-216ENST00000474258 ABCA10Q8WWZ4 1543 aa19.73■□□□□ 0.75
SEMA4D-216ENST00000474258 SYNJ1O43426 1573 aa19.72■□□□□ 0.75
SEMA4D-216ENST00000474258 SYNJ2O15056 1496 aa19.71■□□□□ 0.75
SEMA4D-216ENST00000474258 CLASP1Q7Z460 1538 aa19.7■□□□□ 0.74
SEMA4D-216ENST00000474258 ABCA5Q8WWZ7 1642 aa19.69■□□□□ 0.74
SEMA4D-216ENST00000474258 ARAP1Q96P48 1450 aa19.69■□□□□ 0.74
SEMA4D-216ENST00000474258 BIVM-ERCC5R4GMW8 1640 aa19.68■□□□□ 0.74
SEMA4D-216ENST00000474258 WRNQ14191 1432 aaPredicted RBP eCLIP19.68■□□□□ 0.74
SEMA4D-216ENST00000474258 TOP2BQ02880 1626 aa19.66■□□□□ 0.74
SEMA4D-216ENST00000474258 GRIN2AQ12879 1464 aa19.53■□□□□ 0.72
SEMA4D-216ENST00000474258 ADAMTS12P58397 1594 aa19.53■□□□□ 0.72
SEMA4D-216ENST00000474258 TRHP20396 242 aaPredicted RBP19.51■□□□□ 0.71
SEMA4D-216ENST00000474258 ERICH3Q5RHP9 1530 aa19.5■□□□□ 0.71
SEMA4D-216ENST00000474258 FHAD1B1AJZ9 1412 aa19.48■□□□□ 0.71
SEMA4D-216ENST00000474258 NUP160Q12769 1436 aa19.46■□□□□ 0.71
SEMA4D-216ENST00000474258 CEP170Q5SW79 1584 aa19.45■□□□□ 0.7
SEMA4D-216ENST00000474258 SHROOM2Q13796 1616 aa19.39■□□□□ 0.69
SEMA4D-216ENST00000474258 ERCC6L2Q5T890 1561 aa19.38■□□□□ 0.69
SEMA4D-216ENST00000474258 JPH4Q96JJ6 628 aa19.29■□□□□ 0.68
SEMA4D-216ENST00000474258 KIF27Q86VH2 1401 aa19.27■□□□□ 0.68
SEMA4D-216ENST00000474258 PRG4Q92954 1404 aaPredicted RBP19.26■□□□□ 0.67
SEMA4D-216ENST00000474258 CUL7Q14999 1698 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms