RNA–Protein interactions for RNA: ENST00000474254.5

CPA4-205, Transcript of carboxypeptidase A4, humanhuman

TSL 1 (best)

Gene CPA4, Length 1,026 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPA4-205ENST00000474254 NISCHQ9Y2I1 1504 aa40.34■■■■■ 4.05
CPA4-205ENST00000474254 CCDC180Q9P1Z9 1646 aa36.31■■■■□ 3.4
CPA4-205ENST00000474254 ABCC9O60706 1549 aa36.31■■■■□ 3.4
CPA4-205ENST00000474254 RB1CC1Q8TDY2 1594 aa34.58■■■■□ 3.13
CPA4-205ENST00000474254 NACADO15069 1562 aa34.3■■■■□ 3.08
CPA4-205ENST00000474254 DCAF8L2P0C7V8 631 aa34.1■■■■□ 3.05
CPA4-205ENST00000474254 DNAJC5BQ9UF47 199 aa33.99■■■■□ 3.03
CPA4-205ENST00000474254 UNC13AQ9UPW8 1703 aa33.81■■■■□ 3
CPA4-205ENST00000474254 MYO15BQ96JP2 1530 aa33.78■■■■□ 3
CPA4-205ENST00000474254 PABPN1Q86U42 306 aaKnown RBP eCLIP33.75■■■□□ 2.99
CPA4-205ENST00000474254 ZCCHC6Q5VYS8 1495 aaKnown RBP33.51■■■□□ 2.96
CPA4-205ENST00000474254 BICRAQ9NZM4 1560 aa33.5■■■□□ 2.95
CPA4-205ENST00000474254 DCAF1Q9Y4B6 1507 aa33.35■■■□□ 2.93
CPA4-205ENST00000474254 SHROOM4Q9ULL8 1493 aa33.11■■■□□ 2.89
CPA4-205ENST00000474254 SCRIBQ14160 1630 aa33.07■■■□□ 2.88
CPA4-205ENST00000474254 CC2D2AQ9P2K1 1620 aa32.82■■■□□ 2.84
CPA4-205ENST00000474254 EIF4G1Q04637 1599 aaKnown RBP32.72■■■□□ 2.83
CPA4-205ENST00000474254 CECR2Q9BXF3 1484 aa32.72■■■□□ 2.83
CPA4-205ENST00000474254 NCAPD3P42695 1498 aa31.61■■■□□ 2.65
CPA4-205ENST00000474254 SMARCA4P51532 1647 aa31.53■■■□□ 2.64
CPA4-205ENST00000474254 ATAD2BQ9ULI0 1458 aa31.52■■■□□ 2.64
CPA4-205ENST00000474254 SMARCA2P51531 1590 aa31.49■■■□□ 2.63
CPA4-205ENST00000474254 HMGXB3Q12766 1538 aa31.43■■■□□ 2.62
CPA4-205ENST00000474254 ERCC6Q03468 1493 aa31.41■■■□□ 2.62
CPA4-205ENST00000474254 BAZ1AQ9NRL2 1556 aaPredicted RBP31.36■■■□□ 2.61
CPA4-205ENST00000474254 CUX2O14529 1486 aa31.34■■■□□ 2.61
CPA4-205ENST00000474254 DNAJC5Q9H3Z4 198 aa31.32■■■□□ 2.6
CPA4-205ENST00000474254 BAZ1BQ9UIG0 1483 aaKnown RBP31.27■■■□□ 2.6
CPA4-205ENST00000474254 PEG3Q9GZU2 1588 aa31.18■■■□□ 2.58
CPA4-205ENST00000474254 NESP48681 1621 aa31.14■■■□□ 2.58
CPA4-205ENST00000474254 MROH2BQ7Z745 1585 aa31.07■■■□□ 2.56
CPA4-205ENST00000474254 LAMC3Q9Y6N6 1575 aa30.99■■■□□ 2.55
CPA4-205ENST00000474254 THOC2Q8NI27 1593 aaKnown RBP30.9■■■□□ 2.54
CPA4-205ENST00000474254 KIF21AQ7Z4S6 1674 aa30.83■■■□□ 2.53
CPA4-205ENST00000474254 PDS5BQ9NTI5 1447 aa30.79■■■□□ 2.52
CPA4-205ENST00000474254 WIZO95785 1651 aa30.74■■■□□ 2.51
CPA4-205ENST00000474254 CADPSQ9ULU8 1353 aa30.66■■■□□ 2.5
CPA4-205ENST00000474254 MRC2Q9UBG0 1479 aa30.53■■■□□ 2.48
CPA4-205ENST00000474254 RSF1Q96T23 1441 aaPredicted RBP30.52■■■□□ 2.48
CPA4-205ENST00000474254 WDR62O43379 1518 aa30.45■■■□□ 2.47
CPA4-205ENST00000474254 CEP164Q9UPV0 1460 aa30.41■■■□□ 2.46
CPA4-205ENST00000474254 TOP2AP11388 1531 aaKnown RBP30.37■■■□□ 2.45
CPA4-205ENST00000474254 FANCD2Q9BXW9 1451 aa30.34■■■□□ 2.45
CPA4-205ENST00000474254 CFTRP13569 1480 aa30.29■■■□□ 2.44
CPA4-205ENST00000474254 PRDM2Q13029 1718 aa30.13■■■□□ 2.41
CPA4-205ENST00000474254 URB2Q14146 1524 aaKnown RBP30.07■■■□□ 2.4
CPA4-205ENST00000474254 TRIM41Q8WV44 630 aa30■■■□□ 2.39
CPA4-205ENST00000474254 CCDC88BA6NC98 1476 aa29.96■■■□□ 2.39
CPA4-205ENST00000474254 OSCARQ8IYS5 282 aa29.87■■■□□ 2.37
CPA4-205ENST00000474254 IFT140Q96RY7 1462 aa29.8■■■□□ 2.36
CPA4-205ENST00000474254 TOPBP1Q92547 1522 aa29.76■■■□□ 2.35
CPA4-205ENST00000474254 ABCC8Q09428 1581 aa29.73■■■□□ 2.35
CPA4-205ENST00000474254 ZNF608Q9ULD9 1512 aaPredicted RBP29.71■■■□□ 2.35
CPA4-205ENST00000474254 DNMBPQ6XZF7 1577 aa29.68■■■□□ 2.34
CPA4-205ENST00000474254 EIF4G3O43432 1585 aaKnown RBP29.61■■■□□ 2.33
CPA4-205ENST00000474254 RIMBP3CA6NJZ7 1639 aa29.53■■■□□ 2.32
CPA4-205ENST00000474254 RIMBP3BA6NNM3 1639 aa29.53■■■□□ 2.32
CPA4-205ENST00000474254 RIMBP3Q9UFD9 1639 aa29.53■■■□□ 2.32
CPA4-205ENST00000474254 TARBP1Q13395 1621 aaKnown RBP29.49■■■□□ 2.31
CPA4-205ENST00000474254 POLA1P09884 1462 aaPredicted RBP29.44■■■□□ 2.3
CPA4-205ENST00000474254 AQRO60306 1485 aaKnown RBP eCLIP29.43■■■□□ 2.3
CPA4-205ENST00000474254 CHD1O14646 1710 aa29.43■■■□□ 2.3
CPA4-205ENST00000474254 ARHGEF11O15085 1522 aa29.41■■■□□ 2.3
CPA4-205ENST00000474254 SUPT5HO00267 1087 aaKnown RBP29.37■■■□□ 2.29
CPA4-205ENST00000474254 RAD54L2Q9Y4B4 1467 aa29.32■■■□□ 2.28
CPA4-205ENST00000474254 SOGA1O94964 1423 aa29.31■■■□□ 2.28
CPA4-205ENST00000474254 FBLN2P98095 1184 aa29.3■■■□□ 2.28
CPA4-205ENST00000474254 FGD5Q6ZNL6 1462 aa29.27■■■□□ 2.28
CPA4-205ENST00000474254 WDR97A6NE52 1622 aa29.26■■■□□ 2.27
CPA4-205ENST00000474254 TDRD9Q8NDG6 1382 aaKnown RBP29.24■■■□□ 2.27
CPA4-205ENST00000474254 CUX1P39880 1505 aa29.2■■■□□ 2.27
CPA4-205ENST00000474254 SNAPC4Q5SXM2 1469 aa29.17■■■□□ 2.26
CPA4-205ENST00000474254 CYB5RLQ6IPT4 315 aa29.17■■■□□ 2.26
CPA4-205ENST00000474254 MAGI1Q96QZ7 1491 aaPredicted RBP29.1■■■□□ 2.25
CPA4-205ENST00000474254 ARAP1Q96P48 1450 aa29.1■■■□□ 2.25
CPA4-205ENST00000474254 GRIN2BQ13224 1484 aa29.08■■■□□ 2.25
CPA4-205ENST00000474254 SYNJ1O43426 1573 aa29.07■■■□□ 2.24
CPA4-205ENST00000474254 CHMP7Q8WUX9 453 aaPredicted RBP29.07■■■□□ 2.24
CPA4-205ENST00000474254 PBRM1Q86U86 1689 aa29.03■■■□□ 2.24
CPA4-205ENST00000474254 CLASP1Q7Z460 1538 aa29.03■■■□□ 2.24
CPA4-205ENST00000474254 SYNJ2O15056 1496 aa28.99■■■□□ 2.23
CPA4-205ENST00000474254 GAPVD1Q14C86 1478 aa28.97■■■□□ 2.23
CPA4-205ENST00000474254 TRHP20396 242 aaPredicted RBP28.93■■■□□ 2.22
CPA4-205ENST00000474254 ABCA10Q8WWZ4 1543 aa28.92■■■□□ 2.22
CPA4-205ENST00000474254 ABCA5Q8WWZ7 1642 aa28.91■■■□□ 2.22
CPA4-205ENST00000474254 BIVM-ERCC5R4GMW8 1640 aa28.88■■■□□ 2.21
CPA4-205ENST00000474254 TOP2BQ02880 1626 aa28.84■■■□□ 2.21
CPA4-205ENST00000474254 WRNQ14191 1432 aaPredicted RBP eCLIP28.8■■■□□ 2.2
CPA4-205ENST00000474254 ADAMTS12P58397 1594 aa28.71■■■□□ 2.19
CPA4-205ENST00000474254 GRIN2AQ12879 1464 aa28.71■■■□□ 2.19
CPA4-205ENST00000474254 CEP170Q5SW79 1584 aa28.61■■■□□ 2.17
CPA4-205ENST00000474254 FHAD1B1AJZ9 1412 aa28.6■■■□□ 2.17
CPA4-205ENST00000474254 NUP160Q12769 1436 aa28.58■■■□□ 2.17
CPA4-205ENST00000474254 ERICH3Q5RHP9 1530 aa28.58■■■□□ 2.17
CPA4-205ENST00000474254 ERCC6L2Q5T890 1561 aa28.54■■■□□ 2.16
CPA4-205ENST00000474254 SHROOM2Q13796 1616 aa28.5■■■□□ 2.15
CPA4-205ENST00000474254 PRG4Q92954 1404 aaPredicted RBP28.34■■■□□ 2.13
CPA4-205ENST00000474254 RUSC2Q8N2Y8 1516 aa28.31■■■□□ 2.12
CPA4-205ENST00000474254 JPH4Q96JJ6 628 aa28.28■■■□□ 2.12
CPA4-205ENST00000474254 CUL7Q14999 1698 aa28.2■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms