RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-206ENST00000474215 NISCHQ9Y2I1 1504 aa27.41■■□□□ 1.98
CKS1B-206ENST00000474215 CCDC180Q9P1Z9 1646 aa24.4■■□□□ 1.5
CKS1B-206ENST00000474215 ABCC9O60706 1549 aa24.15■■□□□ 1.46
CKS1B-206ENST00000474215 RB1CC1Q8TDY2 1594 aa23.11■■□□□ 1.29
CKS1B-206ENST00000474215 DCAF8L2P0C7V8 631 aa23.09■■□□□ 1.29
CKS1B-206ENST00000474215 NACADO15069 1562 aa23.04■■□□□ 1.28
CKS1B-206ENST00000474215 MYO15BQ96JP2 1530 aa22.84■■□□□ 1.25
CKS1B-206ENST00000474215 ZCCHC6Q5VYS8 1495 aaKnown RBP22.77■■□□□ 1.24
CKS1B-206ENST00000474215 DCAF1Q9Y4B6 1507 aa22.67■■□□□ 1.22
CKS1B-206ENST00000474215 PABPN1Q86U42 306 aaKnown RBP eCLIP22.58■■□□□ 1.21
CKS1B-206ENST00000474215 UNC13AQ9UPW8 1703 aa22.51■■□□□ 1.19
CKS1B-206ENST00000474215 DNAJC5BQ9UF47 199 aa22.41■■□□□ 1.18
CKS1B-206ENST00000474215 BICRAQ9NZM4 1560 aa22.41■■□□□ 1.18
CKS1B-206ENST00000474215 SCRIBQ14160 1630 aa22.27■■□□□ 1.16
CKS1B-206ENST00000474215 SHROOM4Q9ULL8 1493 aa22.16■■□□□ 1.14
CKS1B-206ENST00000474215 EIF4G1Q04637 1599 aaKnown RBP21.84■■□□□ 1.09
CKS1B-206ENST00000474215 CC2D2AQ9P2K1 1620 aa21.8■■□□□ 1.08
CKS1B-206ENST00000474215 CECR2Q9BXF3 1484 aa21.72■■□□□ 1.07
CKS1B-206ENST00000474215 NCAPD3P42695 1498 aa21.3■■□□□ 1
CKS1B-206ENST00000474215 SMARCA4P51532 1647 aa21.28■■□□□ 1
CKS1B-206ENST00000474215 ATAD2BQ9ULI0 1458 aa21.26■□□□□ 0.99
CKS1B-206ENST00000474215 BAZ1AQ9NRL2 1556 aaPredicted RBP21.25■□□□□ 0.99
CKS1B-206ENST00000474215 SMARCA2P51531 1590 aa21.2■□□□□ 0.98
CKS1B-206ENST00000474215 MROH2BQ7Z745 1585 aa21.13■□□□□ 0.97
CKS1B-206ENST00000474215 HMGXB3Q12766 1538 aa21.12■□□□□ 0.97
CKS1B-206ENST00000474215 PEG3Q9GZU2 1588 aa21.08■□□□□ 0.97
CKS1B-206ENST00000474215 BAZ1BQ9UIG0 1483 aaKnown RBP21.07■□□□□ 0.96
CKS1B-206ENST00000474215 WIZO95785 1651 aa20.86■□□□□ 0.93
CKS1B-206ENST00000474215 RSF1Q96T23 1441 aaPredicted RBP20.84■□□□□ 0.93
CKS1B-206ENST00000474215 NESP48681 1621 aa20.82■□□□□ 0.92
CKS1B-206ENST00000474215 ERCC6Q03468 1493 aa20.82■□□□□ 0.92
CKS1B-206ENST00000474215 LAMC3Q9Y6N6 1575 aa20.72■□□□□ 0.91
CKS1B-206ENST00000474215 CADPSQ9ULU8 1353 aa20.68■□□□□ 0.9
CKS1B-206ENST00000474215 CUX2O14529 1486 aa20.67■□□□□ 0.9
CKS1B-206ENST00000474215 PDS5BQ9NTI5 1447 aa20.64■□□□□ 0.89
CKS1B-206ENST00000474215 TOP2AP11388 1531 aaKnown RBP20.63■□□□□ 0.89
CKS1B-206ENST00000474215 KIF21AQ7Z4S6 1674 aa20.51■□□□□ 0.87
CKS1B-206ENST00000474215 THOC2Q8NI27 1593 aaKnown RBP20.5■□□□□ 0.87
CKS1B-206ENST00000474215 CFTRP13569 1480 aa20.49■□□□□ 0.87
CKS1B-206ENST00000474215 CCDC88BA6NC98 1476 aa20.43■□□□□ 0.86
CKS1B-206ENST00000474215 FANCD2Q9BXW9 1451 aa20.41■□□□□ 0.86
CKS1B-206ENST00000474215 MRC2Q9UBG0 1479 aa20.41■□□□□ 0.86
CKS1B-206ENST00000474215 CEP164Q9UPV0 1460 aa20.39■□□□□ 0.85
CKS1B-206ENST00000474215 DNAJC5Q9H3Z4 198 aa20.35■□□□□ 0.85
CKS1B-206ENST00000474215 WDR62O43379 1518 aa20.32■□□□□ 0.84
CKS1B-206ENST00000474215 URB2Q14146 1524 aaKnown RBP20.22■□□□□ 0.83
CKS1B-206ENST00000474215 SUPT5HO00267 1087 aaKnown RBP20.2■□□□□ 0.82
CKS1B-206ENST00000474215 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
CKS1B-206ENST00000474215 AEBP2Q6ZN18 517 aaPredicted RBP20.09■□□□□ 0.81
CKS1B-206ENST00000474215 ABCC8Q09428 1581 aa20.07■□□□□ 0.8
CKS1B-206ENST00000474215 TOPBP1Q92547 1522 aa20.05■□□□□ 0.8
CKS1B-206ENST00000474215 DNMBPQ6XZF7 1577 aa19.99■□□□□ 0.79
CKS1B-206ENST00000474215 IFT140Q96RY7 1462 aa19.99■□□□□ 0.79
CKS1B-206ENST00000474215 ZNF608Q9ULD9 1512 aaPredicted RBP19.92■□□□□ 0.78
CKS1B-206ENST00000474215 POLA1P09884 1462 aaPredicted RBP19.86■□□□□ 0.77
CKS1B-206ENST00000474215 OSCARQ8IYS5 282 aa19.86■□□□□ 0.77
CKS1B-206ENST00000474215 SOGA1O94964 1423 aa19.83■□□□□ 0.76
CKS1B-206ENST00000474215 TARBP1Q13395 1621 aaKnown RBP19.83■□□□□ 0.76
CKS1B-206ENST00000474215 CUX1P39880 1505 aa19.82■□□□□ 0.76
CKS1B-206ENST00000474215 AQRO60306 1485 aaKnown RBP eCLIP19.8■□□□□ 0.76
CKS1B-206ENST00000474215 RAD54L2Q9Y4B4 1467 aa19.8■□□□□ 0.76
CKS1B-206ENST00000474215 FGD5Q6ZNL6 1462 aa19.79■□□□□ 0.76
CKS1B-206ENST00000474215 EIF4G3O43432 1585 aaKnown RBP19.78■□□□□ 0.76
CKS1B-206ENST00000474215 TDRD9Q8NDG6 1382 aaKnown RBP19.75■□□□□ 0.75
CKS1B-206ENST00000474215 FBLN2P98095 1184 aa19.65■□□□□ 0.74
CKS1B-206ENST00000474215 WDR97A6NE52 1622 aa19.65■□□□□ 0.74
CKS1B-206ENST00000474215 WRNQ14191 1432 aaPredicted RBP eCLIP19.64■□□□□ 0.73
CKS1B-206ENST00000474215 GRIN2BQ13224 1484 aa19.6■□□□□ 0.73
CKS1B-206ENST00000474215 ABCA10Q8WWZ4 1543 aa19.59■□□□□ 0.73
CKS1B-206ENST00000474215 TOP2BQ02880 1626 aa19.58■□□□□ 0.73
CKS1B-206ENST00000474215 TRIM41Q8WV44 630 aa19.58■□□□□ 0.72
CKS1B-206ENST00000474215 SNAPC4Q5SXM2 1469 aa19.58■□□□□ 0.72
CKS1B-206ENST00000474215 GAPVD1Q14C86 1478 aa19.57■□□□□ 0.72
CKS1B-206ENST00000474215 BIVM-ERCC5R4GMW8 1640 aa19.56■□□□□ 0.72
CKS1B-206ENST00000474215 CHMP7Q8WUX9 453 aaPredicted RBP19.56■□□□□ 0.72
CKS1B-206ENST00000474215 SYNJ1O43426 1573 aa19.56■□□□□ 0.72
CKS1B-206ENST00000474215 MAGI1Q96QZ7 1491 aaPredicted RBP19.54■□□□□ 0.72
CKS1B-206ENST00000474215 CHD1O14646 1710 aa19.54■□□□□ 0.72
CKS1B-206ENST00000474215 ABCA5Q8WWZ7 1642 aa19.49■□□□□ 0.71
CKS1B-206ENST00000474215 SYNJ2O15056 1496 aa19.48■□□□□ 0.71
CKS1B-206ENST00000474215 RIMBP3CA6NJZ7 1639 aa19.46■□□□□ 0.71
CKS1B-206ENST00000474215 RIMBP3BA6NNM3 1639 aa19.46■□□□□ 0.71
CKS1B-206ENST00000474215 RIMBP3Q9UFD9 1639 aa19.46■□□□□ 0.71
CKS1B-206ENST00000474215 PBRM1Q86U86 1689 aa19.45■□□□□ 0.7
CKS1B-206ENST00000474215 ARHGEF11O15085 1522 aa19.45■□□□□ 0.7
CKS1B-206ENST00000474215 CLASP1Q7Z460 1538 aa19.37■□□□□ 0.69
CKS1B-206ENST00000474215 CYB5RLQ6IPT4 315 aa19.36■□□□□ 0.69
CKS1B-206ENST00000474215 ERICH3Q5RHP9 1530 aa19.35■□□□□ 0.69
CKS1B-206ENST00000474215 FHAD1B1AJZ9 1412 aa19.34■□□□□ 0.69
CKS1B-206ENST00000474215 GRIN2AQ12879 1464 aa19.33■□□□□ 0.68
CKS1B-206ENST00000474215 ADAMTS12P58397 1594 aa19.32■□□□□ 0.68
CKS1B-206ENST00000474215 ARAP1Q96P48 1450 aa19.28■□□□□ 0.68
CKS1B-206ENST00000474215 NUP160Q12769 1436 aa19.25■□□□□ 0.67
CKS1B-206ENST00000474215 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
CKS1B-206ENST00000474215 IGF1RP08069 1367 aa19.23■□□□□ 0.67
CKS1B-206ENST00000474215 CEP170Q5SW79 1584 aa19.21■□□□□ 0.67
CKS1B-206ENST00000474215 CHIC1Q5VXU3 224 aa19.12■□□□□ 0.65
CKS1B-206ENST00000474215 JPH4Q96JJ6 628 aa19.12■□□□□ 0.65
CKS1B-206ENST00000474215 CARMIL1Q5VZK9 1371 aa19.1■□□□□ 0.65
CKS1B-206ENST00000474215 CUL7Q14999 1698 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 291.2 ms