RNA–Protein interactions for RNA: ENST00000474136.5

APP-215, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best)

Gene APP, Length 1,309 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-215ENST00000474136 NISCHQ9Y2I1 1504 aa51.26■■■■■ 5.8
APP-215ENST00000474136 ABCC9O60706 1549 aa46.83■■■■■ 5.09
APP-215ENST00000474136 CCDC180Q9P1Z9 1646 aa46.1■■■■■ 4.97
APP-215ENST00000474136 DNAJC5BQ9UF47 199 aa44.51■■■■■ 4.72
APP-215ENST00000474136 RB1CC1Q8TDY2 1594 aa44.21■■■■■ 4.67
APP-215ENST00000474136 NACADO15069 1562 aa43.77■■■■■ 4.6
APP-215ENST00000474136 DCAF8L2P0C7V8 631 aa43.63■■■■■ 4.57
APP-215ENST00000474136 PABPN1Q86U42 306 aaKnown RBP eCLIP43.59■■■■■ 4.57
APP-215ENST00000474136 UNC13AQ9UPW8 1703 aa43.18■■■■■ 4.5
APP-215ENST00000474136 BICRAQ9NZM4 1560 aa43.02■■■■■ 4.48
APP-215ENST00000474136 MYO15BQ96JP2 1530 aa42.97■■■■■ 4.47
APP-215ENST00000474136 ZCCHC6Q5VYS8 1495 aaKnown RBP42.35■■■■■ 4.37
APP-215ENST00000474136 SHROOM4Q9ULL8 1493 aa42.25■■■■■ 4.35
APP-215ENST00000474136 DCAF1Q9Y4B6 1507 aa42.23■■■■■ 4.35
APP-215ENST00000474136 CECR2Q9BXF3 1484 aa42.21■■■■■ 4.35
APP-215ENST00000474136 CC2D2AQ9P2K1 1620 aa42.2■■■■■ 4.35
APP-215ENST00000474136 SCRIBQ14160 1630 aa42.11■■■■■ 4.33
APP-215ENST00000474136 EIF4G1Q04637 1599 aaKnown RBP41.98■■■■■ 4.31
APP-215ENST00000474136 DNAJC5Q9H3Z4 198 aa41.18■■■■■ 4.18
APP-215ENST00000474136 CUX2O14529 1486 aa40.49■■■■■ 4.07
APP-215ENST00000474136 NCAPD3P42695 1498 aa40.47■■■■■ 4.07
APP-215ENST00000474136 ERCC6Q03468 1493 aa40.43■■■■■ 4.06
APP-215ENST00000474136 ATAD2BQ9ULI0 1458 aa40.3■■■■■ 4.04
APP-215ENST00000474136 NESP48681 1621 aa40.09■■■■■ 4.01
APP-215ENST00000474136 SMARCA2P51531 1590 aa40.09■■■■■ 4.01
APP-215ENST00000474136 HMGXB3Q12766 1538 aa40.07■■■■■ 4.01
APP-215ENST00000474136 SMARCA4P51532 1647 aa40.07■■■■■ 4
APP-215ENST00000474136 BAZ1BQ9UIG0 1483 aaKnown RBP39.86■■■■□ 3.97
APP-215ENST00000474136 BAZ1AQ9NRL2 1556 aaPredicted RBP39.77■■■■□ 3.96
APP-215ENST00000474136 THOC2Q8NI27 1593 aaKnown RBP39.7■■■■□ 3.95
APP-215ENST00000474136 PEG3Q9GZU2 1588 aa39.66■■■■□ 3.94
APP-215ENST00000474136 LAMC3Q9Y6N6 1575 aa39.59■■■■□ 3.93
APP-215ENST00000474136 MROH2BQ7Z745 1585 aa39.53■■■■□ 3.92
APP-215ENST00000474136 KIF21AQ7Z4S6 1674 aa39.44■■■■□ 3.9
APP-215ENST00000474136 PDS5BQ9NTI5 1447 aa39.43■■■■□ 3.9
APP-215ENST00000474136 CADPSQ9ULU8 1353 aa39.24■■■■□ 3.87
APP-215ENST00000474136 TRIM41Q8WV44 630 aa39.21■■■■□ 3.87
APP-215ENST00000474136 MRC2Q9UBG0 1479 aa39.14■■■■□ 3.86
APP-215ENST00000474136 WDR62O43379 1518 aa39.04■■■■□ 3.84
APP-215ENST00000474136 WIZO95785 1651 aa39■■■■□ 3.83
APP-215ENST00000474136 CEP164Q9UPV0 1460 aa38.86■■■■□ 3.81
APP-215ENST00000474136 FANCD2Q9BXW9 1451 aa38.8■■■■□ 3.8
APP-215ENST00000474136 CFTRP13569 1480 aa38.67■■■■□ 3.78
APP-215ENST00000474136 OSCARQ8IYS5 282 aa38.63■■■■□ 3.77
APP-215ENST00000474136 URB2Q14146 1524 aaKnown RBP38.54■■■■□ 3.76
APP-215ENST00000474136 RSF1Q96T23 1441 aaPredicted RBP38.52■■■■□ 3.76
APP-215ENST00000474136 TOP2AP11388 1531 aaKnown RBP38.44■■■■□ 3.74
APP-215ENST00000474136 ZNF608Q9ULD9 1512 aaPredicted RBP38.18■■■■□ 3.7
APP-215ENST00000474136 RIMBP3CA6NJZ7 1639 aa38.14■■■■□ 3.7
APP-215ENST00000474136 RIMBP3BA6NNM3 1639 aa38.14■■■■□ 3.7
APP-215ENST00000474136 RIMBP3Q9UFD9 1639 aa38.14■■■■□ 3.7
APP-215ENST00000474136 IFT140Q96RY7 1462 aa38.11■■■■□ 3.69
APP-215ENST00000474136 CCDC88BA6NC98 1476 aa38.07■■■■□ 3.69
APP-215ENST00000474136 PRDM2Q13029 1718 aa38.07■■■■□ 3.68
APP-215ENST00000474136 TOPBP1Q92547 1522 aa38■■■■□ 3.67
APP-215ENST00000474136 ARHGEF11O15085 1522 aa37.98■■■■□ 3.67
APP-215ENST00000474136 EIF4G3O43432 1585 aaKnown RBP37.85■■■■□ 3.65
APP-215ENST00000474136 CYB5RLQ6IPT4 315 aa37.82■■■■□ 3.64
APP-215ENST00000474136 ABCC8Q09428 1581 aa37.8■■■■□ 3.64
APP-215ENST00000474136 DNMBPQ6XZF7 1577 aa37.76■■■■□ 3.64
APP-215ENST00000474136 AQRO60306 1485 aaKnown RBP eCLIP37.76■■■■□ 3.64
APP-215ENST00000474136 TARBP1Q13395 1621 aaKnown RBP37.67■■■■□ 3.62
APP-215ENST00000474136 FBLN2P98095 1184 aa37.65■■■■□ 3.62
APP-215ENST00000474136 CHD1O14646 1710 aa37.64■■■■□ 3.62
APP-215ENST00000474136 ARAP1Q96P48 1450 aa37.61■■■■□ 3.61
APP-215ENST00000474136 POLA1P09884 1462 aaPredicted RBP37.58■■■■□ 3.61
APP-215ENST00000474136 TRHP20396 242 aaPredicted RBP37.57■■■■□ 3.6
APP-215ENST00000474136 RAD54L2Q9Y4B4 1467 aa37.51■■■■□ 3.6
APP-215ENST00000474136 TDRD9Q8NDG6 1382 aaKnown RBP37.47■■■■□ 3.59
APP-215ENST00000474136 SOGA1O94964 1423 aa37.42■■■■□ 3.58
APP-215ENST00000474136 SNAPC4Q5SXM2 1469 aa37.33■■■■□ 3.57
APP-215ENST00000474136 FGD5Q6ZNL6 1462 aa37.27■■■■□ 3.56
APP-215ENST00000474136 CHMP7Q8WUX9 453 aaPredicted RBP37.25■■■■□ 3.55
APP-215ENST00000474136 CLASP1Q7Z460 1538 aa37.24■■■■□ 3.55
APP-215ENST00000474136 CUX1P39880 1505 aa37.16■■■■□ 3.54
APP-215ENST00000474136 MAGI1Q96QZ7 1491 aaPredicted RBP37.15■■■■□ 3.54
APP-215ENST00000474136 WDR97A6NE52 1622 aa37.15■■■■□ 3.54
APP-215ENST00000474136 SYNJ1O43426 1573 aa37.13■■■■□ 3.54
APP-215ENST00000474136 GRIN2BQ13224 1484 aa37.12■■■■□ 3.53
APP-215ENST00000474136 SYNJ2O15056 1496 aa37.06■■■■□ 3.52
APP-215ENST00000474136 GAPVD1Q14C86 1478 aa36.93■■■■□ 3.5
APP-215ENST00000474136 PBRM1Q86U86 1689 aa36.86■■■■□ 3.49
APP-215ENST00000474136 AEBP2Q6ZN18 517 aaPredicted RBP36.83■■■■□ 3.49
APP-215ENST00000474136 ABCA10Q8WWZ4 1543 aa36.79■■■■□ 3.48
APP-215ENST00000474136 ABCA5Q8WWZ7 1642 aa36.75■■■■□ 3.47
APP-215ENST00000474136 ERCC6L2Q5T890 1561 aa36.7■■■■□ 3.47
APP-215ENST00000474136 GRIN2AQ12879 1464 aa36.65■■■■□ 3.46
APP-215ENST00000474136 NUP160Q12769 1436 aa36.56■■■■□ 3.44
APP-215ENST00000474136 CEP170Q5SW79 1584 aa36.55■■■■□ 3.44
APP-215ENST00000474136 WRNQ14191 1432 aaPredicted RBP eCLIP36.55■■■■□ 3.44
APP-215ENST00000474136 ADAMTS12P58397 1594 aa36.53■■■■□ 3.44
APP-215ENST00000474136 SUPT5HO00267 1087 aaKnown RBP36.5■■■■□ 3.43
APP-215ENST00000474136 FHAD1B1AJZ9 1412 aa36.44■■■■□ 3.42
APP-215ENST00000474136 SHROOM2Q13796 1616 aa36.39■■■■□ 3.42
APP-215ENST00000474136 TOP2BQ02880 1626 aa36.35■■■■□ 3.41
APP-215ENST00000474136 BIVM-ERCC5R4GMW8 1640 aa36.33■■■■□ 3.41
APP-215ENST00000474136 ERICH3Q5RHP9 1530 aa36.28■■■■□ 3.4
APP-215ENST00000474136 PRG4Q92954 1404 aaPredicted RBP36.27■■■■□ 3.4
APP-215ENST00000474136 JPH4Q96JJ6 628 aa36.23■■■■□ 3.39
APP-215ENST00000474136 KIF13AQ9H1H9 1805 aa36.19■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms