RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 NISCHQ9Y2I1 1504 aa23.6■■□□□ 1.37
PRPF38A-202ENST00000474048 CCDC180Q9P1Z9 1646 aa20.83■□□□□ 0.93
PRPF38A-202ENST00000474048 ABCC9O60706 1549 aa19.83■□□□□ 0.77
PRPF38A-202ENST00000474048 ZCCHC6Q5VYS8 1495 aaKnown RBP19.78■□□□□ 0.76
PRPF38A-202ENST00000474048 DCAF8L2P0C7V8 631 aa19.65■□□□□ 0.74
PRPF38A-202ENST00000474048 DCAF1Q9Y4B6 1507 aa19.55■□□□□ 0.72
PRPF38A-202ENST00000474048 NACADO15069 1562 aa19.44■□□□□ 0.7
PRPF38A-202ENST00000474048 MYO15BQ96JP2 1530 aa19.42■□□□□ 0.7
PRPF38A-202ENST00000474048 RB1CC1Q8TDY2 1594 aa19.37■□□□□ 0.69
PRPF38A-202ENST00000474048 SCRIBQ14160 1630 aa19.07■□□□□ 0.64
PRPF38A-202ENST00000474048 SHROOM4Q9ULL8 1493 aa19.07■□□□□ 0.64
PRPF38A-202ENST00000474048 UNC13AQ9UPW8 1703 aa18.88■□□□□ 0.61
PRPF38A-202ENST00000474048 BICRAQ9NZM4 1560 aa18.6■□□□□ 0.57
PRPF38A-202ENST00000474048 PABPN1Q86U42 306 aaKnown RBP eCLIP18.59■□□□□ 0.57
PRPF38A-202ENST00000474048 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
PRPF38A-202ENST00000474048 CECR2Q9BXF3 1484 aa18.27■□□□□ 0.52
PRPF38A-202ENST00000474048 SMARCA4P51532 1647 aa18.25■□□□□ 0.51
PRPF38A-202ENST00000474048 SUPT5HO00267 1087 aaKnown RBP18.25■□□□□ 0.51
PRPF38A-202ENST00000474048 AEBP2Q6ZN18 517 aaPredicted RBP18.24■□□□□ 0.51
PRPF38A-202ENST00000474048 MROH2BQ7Z745 1585 aa18.18■□□□□ 0.5
PRPF38A-202ENST00000474048 EIF4G1Q04637 1599 aaKnown RBP18.16■□□□□ 0.5
PRPF38A-202ENST00000474048 RSF1Q96T23 1441 aaPredicted RBP18.15■□□□□ 0.5
PRPF38A-202ENST00000474048 WIZO95785 1651 aa18.07■□□□□ 0.48
PRPF38A-202ENST00000474048 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
PRPF38A-202ENST00000474048 PEG3Q9GZU2 1588 aa18■□□□□ 0.47
PRPF38A-202ENST00000474048 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
PRPF38A-202ENST00000474048 CC2D2AQ9P2K1 1620 aa17.95■□□□□ 0.46
PRPF38A-202ENST00000474048 CHIC1Q5VXU3 224 aa17.94■□□□□ 0.46
PRPF38A-202ENST00000474048 BAZ1BQ9UIG0 1483 aaKnown RBP17.94■□□□□ 0.46
PRPF38A-202ENST00000474048 TOP2AP11388 1531 aaKnown RBP17.93■□□□□ 0.46
PRPF38A-202ENST00000474048 HMGXB3Q12766 1538 aa17.88■□□□□ 0.45
PRPF38A-202ENST00000474048 NCAPD3P42695 1498 aa17.84■□□□□ 0.45
PRPF38A-202ENST00000474048 CCDC88BA6NC98 1476 aa17.66■□□□□ 0.42
PRPF38A-202ENST00000474048 DNAJC5BQ9UF47 199 aa17.51■□□□□ 0.39
PRPF38A-202ENST00000474048 PRDM2Q13029 1718 aa17.44■□□□□ 0.38
PRPF38A-202ENST00000474048 LAMC3Q9Y6N6 1575 aa17.39■□□□□ 0.37
PRPF38A-202ENST00000474048 CADPSQ9ULU8 1353 aa17.39■□□□□ 0.37
PRPF38A-202ENST00000474048 CFTRP13569 1480 aa17.38■□□□□ 0.37
PRPF38A-202ENST00000474048 NESP48681 1621 aa17.27■□□□□ 0.36
PRPF38A-202ENST00000474048 PDS5BQ9NTI5 1447 aa17.26■□□□□ 0.35
PRPF38A-202ENST00000474048 FANCD2Q9BXW9 1451 aa17.24■□□□□ 0.35
PRPF38A-202ENST00000474048 ABCC8Q09428 1581 aa17.23■□□□□ 0.35
PRPF38A-202ENST00000474048 TRIM41Q8WV44 630 aa17.22■□□□□ 0.35
PRPF38A-202ENST00000474048 CEP164Q9UPV0 1460 aa17.2■□□□□ 0.34
PRPF38A-202ENST00000474048 WRNQ14191 1432 aaPredicted RBP eCLIP17.2■□□□□ 0.34
PRPF38A-202ENST00000474048 KIF21AQ7Z4S6 1674 aa17.16■□□□□ 0.34
PRPF38A-202ENST00000474048 ERCC6Q03468 1493 aa17.16■□□□□ 0.34
PRPF38A-202ENST00000474048 SYNJ1O43426 1573 aa17.09■□□□□ 0.33
PRPF38A-202ENST00000474048 TOP2BQ02880 1626 aa17.09■□□□□ 0.33
PRPF38A-202ENST00000474048 BIVM-ERCC5R4GMW8 1640 aa17.09■□□□□ 0.33
PRPF38A-202ENST00000474048 DNMBPQ6XZF7 1577 aa17.06■□□□□ 0.32
PRPF38A-202ENST00000474048 CUX1P39880 1505 aa17.04■□□□□ 0.32
PRPF38A-202ENST00000474048 MRC2Q9UBG0 1479 aa17.04■□□□□ 0.32
PRPF38A-202ENST00000474048 TOPBP1Q92547 1522 aa17■□□□□ 0.31
PRPF38A-202ENST00000474048 URB2Q14146 1524 aaKnown RBP16.97■□□□□ 0.31
PRPF38A-202ENST00000474048 FGD5Q6ZNL6 1462 aa16.95■□□□□ 0.3
PRPF38A-202ENST00000474048 WDR62O43379 1518 aa16.92■□□□□ 0.3
PRPF38A-202ENST00000474048 THOC2Q8NI27 1593 aaKnown RBP16.92■□□□□ 0.3
PRPF38A-202ENST00000474048 EEA1Q15075 1411 aa16.88■□□□□ 0.29
PRPF38A-202ENST00000474048 POLA1P09884 1462 aaPredicted RBP16.88■□□□□ 0.29
PRPF38A-202ENST00000474048 FAM9AQ8IZU1 332 aaPredicted RBP16.85■□□□□ 0.29
PRPF38A-202ENST00000474048 SOGA1O94964 1423 aa16.85■□□□□ 0.29
PRPF38A-202ENST00000474048 KIF27Q86VH2 1401 aa16.82■□□□□ 0.28
PRPF38A-202ENST00000474048 CUX2O14529 1486 aa16.81■□□□□ 0.28
PRPF38A-202ENST00000474048 IFT140Q96RY7 1462 aa16.79■□□□□ 0.28
PRPF38A-202ENST00000474048 RAD54L2Q9Y4B4 1467 aa16.79■□□□□ 0.28
PRPF38A-202ENST00000474048 ABCA10Q8WWZ4 1543 aa16.78■□□□□ 0.28
PRPF38A-202ENST00000474048 WDR97A6NE52 1622 aa16.78■□□□□ 0.28
PRPF38A-202ENST00000474048 TARBP1Q13395 1621 aaKnown RBP16.74■□□□□ 0.27
PRPF38A-202ENST00000474048 CSRNP3Q8WYN3 585 aa16.72■□□□□ 0.27
PRPF38A-202ENST00000474048 RUSC2Q8N2Y8 1516 aa16.7■□□□□ 0.26
PRPF38A-202ENST00000474048 ABCA5Q8WWZ7 1642 aa16.68■□□□□ 0.26
PRPF38A-202ENST00000474048 GAPVD1Q14C86 1478 aa16.67■□□□□ 0.26
PRPF38A-202ENST00000474048 TDRD9Q8NDG6 1382 aaKnown RBP16.66■□□□□ 0.26
PRPF38A-202ENST00000474048 PBRM1Q86U86 1689 aa16.66■□□□□ 0.26
PRPF38A-202ENST00000474048 CUL7Q14999 1698 aa16.65■□□□□ 0.26
PRPF38A-202ENST00000474048 EIF4G3O43432 1585 aaKnown RBP16.64■□□□□ 0.25
PRPF38A-202ENST00000474048 KIF21BO75037 1637 aa16.64■□□□□ 0.25
PRPF38A-202ENST00000474048 EHMT2Q96KQ7 1210 aa16.63■□□□□ 0.25
PRPF38A-202ENST00000474048 ERICH3Q5RHP9 1530 aa16.63■□□□□ 0.25
PRPF38A-202ENST00000474048 GOLGA3Q08378 1498 aa16.62■□□□□ 0.25
PRPF38A-202ENST00000474048 GRIN2BQ13224 1484 aa16.61■□□□□ 0.25
PRPF38A-202ENST00000474048 AQRO60306 1485 aaKnown RBP eCLIP16.59■□□□□ 0.252e-8■■■■□ 20.3
PRPF38A-202ENST00000474048 ZNF608Q9ULD9 1512 aaPredicted RBP16.59■□□□□ 0.25
PRPF38A-202ENST00000474048 IGF1RP08069 1367 aa16.56■□□□□ 0.24
PRPF38A-202ENST00000474048 CARMIL1Q5VZK9 1371 aa16.56■□□□□ 0.24
PRPF38A-202ENST00000474048 UBTFP17480 764 aaKnown RBP16.56■□□□□ 0.24
PRPF38A-202ENST00000474048 RAPGEF2Q9Y4G8 1499 aa16.54■□□□□ 0.24
PRPF38A-202ENST00000474048 LOC105371045A0A1W2PR82 267 aa16.54■□□□□ 0.24
PRPF38A-202ENST00000474048 PRXQ9BXM0 1461 aa16.54■□□□□ 0.24
PRPF38A-202ENST00000474048 MAGI1Q96QZ7 1491 aaPredicted RBP16.51■□□□□ 0.23
PRPF38A-202ENST00000474048 ADAMTS12P58397 1594 aa16.51■□□□□ 0.23
PRPF38A-202ENST00000474048 SNAPC4Q5SXM2 1469 aa16.5■□□□□ 0.23
PRPF38A-202ENST00000474048 FHAD1B1AJZ9 1412 aa16.5■□□□□ 0.23
PRPF38A-202ENST00000474048 TNIKQ9UKE5 1360 aa16.44■□□□□ 0.22
PRPF38A-202ENST00000474048 CTTNBP2Q8WZ74 1663 aa16.43■□□□□ 0.22
PRPF38A-202ENST00000474048 SYNJ2O15056 1496 aa16.42■□□□□ 0.22
PRPF38A-202ENST00000474048 FBLN2P98095 1184 aa16.42■□□□□ 0.22
PRPF38A-202ENST00000474048 CHMP7Q8WUX9 453 aaPredicted RBP16.42■□□□□ 0.22
PRPF38A-202ENST00000474048 GRIN2AQ12879 1464 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms