RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 NISCHQ9Y2I1 1504 aa34.39■■■■□ 3.1
VAMP4-203ENST00000474047 CCDC180Q9P1Z9 1646 aa30.59■■■□□ 2.49
VAMP4-203ENST00000474047 ABCC9O60706 1549 aa30.09■■■□□ 2.41
VAMP4-203ENST00000474047 DCAF8L2P0C7V8 631 aa28.99■■■□□ 2.23
VAMP4-203ENST00000474047 RB1CC1Q8TDY2 1594 aa28.88■■■□□ 2.21
VAMP4-203ENST00000474047 NACADO15069 1562 aa28.81■■■□□ 2.2
VAMP4-203ENST00000474047 ZCCHC6Q5VYS8 1495 aaKnown RBP28.6■■■□□ 2.17
VAMP4-203ENST00000474047 MYO15BQ96JP2 1530 aa28.55■■■□□ 2.16
VAMP4-203ENST00000474047 DCAF1Q9Y4B6 1507 aa28.41■■■□□ 2.14
VAMP4-203ENST00000474047 UNC13AQ9UPW8 1703 aa28.17■■■□□ 2.1
VAMP4-203ENST00000474047 PABPN1Q86U42 306 aaKnown RBP eCLIP28.15■■■□□ 2.1
VAMP4-203ENST00000474047 SCRIBQ14160 1630 aa27.96■■■□□ 2.07
VAMP4-203ENST00000474047 BICRAQ9NZM4 1560 aa27.93■■■□□ 2.06
VAMP4-203ENST00000474047 DNAJC5BQ9UF47 199 aa27.66■■■□□ 2.02
VAMP4-203ENST00000474047 SHROOM4Q9ULL8 1493 aa27.65■■■□□ 2.02
VAMP4-203ENST00000474047 EIF4G1Q04637 1599 aaKnown RBP27.25■■□□□ 1.95
VAMP4-203ENST00000474047 CC2D2AQ9P2K1 1620 aa27.18■■□□□ 1.94
VAMP4-203ENST00000474047 CECR2Q9BXF3 1484 aa27.04■■□□□ 1.92
VAMP4-203ENST00000474047 SMARCA4P51532 1647 aa26.7■■□□□ 1.86
VAMP4-203ENST00000474047 BAZ1AQ9NRL2 1556 aaPredicted RBP26.68■■□□□ 1.86
VAMP4-203ENST00000474047 ATAD2BQ9ULI0 1458 aa26.58■■□□□ 1.85
VAMP4-203ENST00000474047 SMARCA2P51531 1590 aa26.57■■□□□ 1.84
VAMP4-203ENST00000474047 NCAPD3P42695 1498 aa26.57■■□□□ 1.84
VAMP4-203ENST00000474047 MROH2BQ7Z745 1585 aa26.5■■□□□ 1.83
VAMP4-203ENST00000474047 HMGXB3Q12766 1538 aa26.42■■□□□ 1.82
VAMP4-203ENST00000474047 BAZ1BQ9UIG0 1483 aaKnown RBP26.41■■□□□ 1.82
VAMP4-203ENST00000474047 PEG3Q9GZU2 1588 aa26.39■■□□□ 1.81
VAMP4-203ENST00000474047 WIZO95785 1651 aa26.23■■□□□ 1.79
VAMP4-203ENST00000474047 RSF1Q96T23 1441 aaPredicted RBP26.18■■□□□ 1.78
VAMP4-203ENST00000474047 ERCC6Q03468 1493 aa25.99■■□□□ 1.75
VAMP4-203ENST00000474047 NESP48681 1621 aa25.98■■□□□ 1.75
VAMP4-203ENST00000474047 DNAJC5Q9H3Z4 198 aa25.95■■□□□ 1.74
VAMP4-203ENST00000474047 TOP2AP11388 1531 aaKnown RBP25.93■■□□□ 1.74
VAMP4-203ENST00000474047 LAMC3Q9Y6N6 1575 aa25.9■■□□□ 1.74
VAMP4-203ENST00000474047 CADPSQ9ULU8 1353 aa25.84■■□□□ 1.73
VAMP4-203ENST00000474047 PDS5BQ9NTI5 1447 aa25.79■■□□□ 1.72
VAMP4-203ENST00000474047 KIF21AQ7Z4S6 1674 aa25.66■■□□□ 1.7
VAMP4-203ENST00000474047 CUX2O14529 1486 aa25.66■■□□□ 1.7
VAMP4-203ENST00000474047 CCDC88BA6NC98 1476 aa25.65■■□□□ 1.7
VAMP4-203ENST00000474047 CFTRP13569 1480 aa25.63■■□□□ 1.69
VAMP4-203ENST00000474047 SUPT5HO00267 1087 aaKnown RBP25.62■■□□□ 1.69
VAMP4-203ENST00000474047 THOC2Q8NI27 1593 aaKnown RBP25.55■■□□□ 1.68
VAMP4-203ENST00000474047 FANCD2Q9BXW9 1451 aa25.54■■□□□ 1.68
VAMP4-203ENST00000474047 CEP164Q9UPV0 1460 aa25.52■■□□□ 1.68
VAMP4-203ENST00000474047 MRC2Q9UBG0 1479 aa25.49■■□□□ 1.67
VAMP4-203ENST00000474047 PRDM2Q13029 1718 aa25.41■■□□□ 1.66
VAMP4-203ENST00000474047 WDR62O43379 1518 aa25.36■■□□□ 1.65
VAMP4-203ENST00000474047 URB2Q14146 1524 aaKnown RBP25.25■■□□□ 1.63
VAMP4-203ENST00000474047 ABCC8Q09428 1581 aa25.13■■□□□ 1.61
VAMP4-203ENST00000474047 TOPBP1Q92547 1522 aa25.11■■□□□ 1.61
VAMP4-203ENST00000474047 DNMBPQ6XZF7 1577 aa25.06■■□□□ 1.6
VAMP4-203ENST00000474047 IFT140Q96RY7 1462 aa24.98■■□□□ 1.59
VAMP4-203ENST00000474047 POLA1P09884 1462 aaPredicted RBP24.87■■□□□ 1.57
VAMP4-203ENST00000474047 CUX1P39880 1505 aa24.87■■□□□ 1.57
VAMP4-203ENST00000474047 ZNF608Q9ULD9 1512 aaPredicted RBP24.85■■□□□ 1.57
VAMP4-203ENST00000474047 SOGA1O94964 1423 aa24.84■■□□□ 1.57
VAMP4-203ENST00000474047 FGD5Q6ZNL6 1462 aa24.82■■□□□ 1.56
VAMP4-203ENST00000474047 RAD54L2Q9Y4B4 1467 aa24.8■■□□□ 1.56
VAMP4-203ENST00000474047 TARBP1Q13395 1621 aaKnown RBP24.79■■□□□ 1.56
VAMP4-203ENST00000474047 AQRO60306 1485 aaKnown RBP eCLIP24.75■■□□□ 1.55
VAMP4-203ENST00000474047 EIF4G3O43432 1585 aaKnown RBP24.74■■□□□ 1.55
VAMP4-203ENST00000474047 WRNQ14191 1432 aaPredicted RBP eCLIP24.73■■□□□ 1.55
VAMP4-203ENST00000474047 TDRD9Q8NDG6 1382 aaKnown RBP24.71■■□□□ 1.55
VAMP4-203ENST00000474047 OSCARQ8IYS5 282 aa24.69■■□□□ 1.54
VAMP4-203ENST00000474047 TOP2BQ02880 1626 aa24.64■■□□□ 1.53
VAMP4-203ENST00000474047 SYNJ1O43426 1573 aa24.62■■□□□ 1.53
VAMP4-203ENST00000474047 BIVM-ERCC5R4GMW8 1640 aa24.61■■□□□ 1.53
VAMP4-203ENST00000474047 WDR97A6NE52 1622 aa24.6■■□□□ 1.53
VAMP4-203ENST00000474047 FBLN2P98095 1184 aa24.59■■□□□ 1.53
VAMP4-203ENST00000474047 ABCA10Q8WWZ4 1543 aa24.56■■□□□ 1.52
VAMP4-203ENST00000474047 GRIN2BQ13224 1484 aa24.53■■□□□ 1.52
VAMP4-203ENST00000474047 GAPVD1Q14C86 1478 aa24.53■■□□□ 1.52
VAMP4-203ENST00000474047 SNAPC4Q5SXM2 1469 aa24.5■■□□□ 1.51
VAMP4-203ENST00000474047 CHMP7Q8WUX9 453 aaPredicted RBP24.47■■□□□ 1.51
VAMP4-203ENST00000474047 CHD1O14646 1710 aa24.46■■□□□ 1.51
VAMP4-203ENST00000474047 MAGI1Q96QZ7 1491 aaPredicted RBP24.46■■□□□ 1.51
VAMP4-203ENST00000474047 PBRM1Q86U86 1689 aa24.44■■□□□ 1.5
VAMP4-203ENST00000474047 ABCA5Q8WWZ7 1642 aa24.44■■□□□ 1.5
VAMP4-203ENST00000474047 SYNJ2O15056 1496 aa24.37■■□□□ 1.49
VAMP4-203ENST00000474047 ERICH3Q5RHP9 1530 aa24.27■■□□□ 1.48
VAMP4-203ENST00000474047 TRIM41Q8WV44 630 aa24.26■■□□□ 1.47
VAMP4-203ENST00000474047 KIF27Q86VH2 1401 aa24.24■■□□□ 1.47
VAMP4-203ENST00000474047 FHAD1B1AJZ9 1412 aa24.23■■□□□ 1.47
VAMP4-203ENST00000474047 ADAMTS12P58397 1594 aa24.23■■□□□ 1.47
VAMP4-203ENST00000474047 RIMBP3CA6NJZ7 1639 aa24.2■■□□□ 1.46
VAMP4-203ENST00000474047 RIMBP3BA6NNM3 1639 aa24.2■■□□□ 1.46
VAMP4-203ENST00000474047 RIMBP3Q9UFD9 1639 aa24.2■■□□□ 1.46
VAMP4-203ENST00000474047 GRIN2AQ12879 1464 aa24.2■■□□□ 1.46
VAMP4-203ENST00000474047 ARHGEF11O15085 1522 aa24.19■■□□□ 1.46
VAMP4-203ENST00000474047 CLASP1Q7Z460 1538 aa24.15■■□□□ 1.46
VAMP4-203ENST00000474047 IGF1RP08069 1367 aa24.12■■□□□ 1.45
VAMP4-203ENST00000474047 CYB5RLQ6IPT4 315 aa24.08■■□□□ 1.45
VAMP4-203ENST00000474047 NUP160Q12769 1436 aa24.06■■□□□ 1.44
VAMP4-203ENST00000474047 CEP170Q5SW79 1584 aa24.05■■□□□ 1.44
VAMP4-203ENST00000474047 CUL7Q14999 1698 aa24.04■■□□□ 1.44
VAMP4-203ENST00000474047 CARMIL1Q5VZK9 1371 aa24.01■■□□□ 1.43
VAMP4-203ENST00000474047 ARAP1Q96P48 1450 aa23.97■■□□□ 1.43
VAMP4-203ENST00000474047 RUSC2Q8N2Y8 1516 aa23.95■■□□□ 1.42
VAMP4-203ENST00000474047 JPH4Q96JJ6 628 aa23.91■■□□□ 1.42
VAMP4-203ENST00000474047 SHROOM2Q13796 1616 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms